TCONS_00054750 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054750
Unique NameTCONS_00054750
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1828

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054750 ID=TCONS_00054750|Name=TCONS_00054750|organism=Clytia hemisphaerica|type=transcript|length=1828bp
CNGGAGTGCCAAATGGATTTGCATTGGGATCAGTAGAAGGAAGAGTTGCC
ATGCAATACATAAATCCTACCGATCCtaAAGACAATTTCACTTTTAAATG
CCATCGATCAGATATAACGTCCGGACAAGTTCAAGATATCTATGCTGTGA
ATGATATCGTGTTTCATCCACAAATTGGAACACTGGCTACTGTCGGCTCA
GATGGAAAGTACAGTTTCTGGGATAAAGATGCTAGAACCAAACTCAAAAC
TTCCGAAAACTGTGGACAATCGATCACAGCTTGTTGTTTTAACGCTGAGg
gaaatatttttgcatattccACTGGCTATGATTGGACTAAGGGTCATGAA
TTTTACAATCCGAACCAAAAGCCAGCGATTTATTTGAGAAGTTGTGCCGA
TGAGATGaaaccaaaaaccaaaaaatgaaaattaagaaaCAAGAATGGGA
TGGGTTTAATAAAACTTTCTAGAGCATATTCATTCCATGTGATCCAtcag
ttttattttgaagtcgCTTGCTTTTTGGACTCATCTGACTGATCGATGTA
AACAAtggattgttttttttctgatcaATGTAGACAATGAATTGGTTTGT
TTTTGTGAATGACTCATAACACTGTTTGAGTAGAGAACATTTCTCCAATA
AGCTATGAACTGGTAAAAGGGTTCTGGAATCTTCACGAATCCTTTTCGAA
TTTAATGATATCATATACGCTTACCCCTATACGCGGGAattataatttca
ttttaagAATCAATTTTGAATGTCTAGAgagaatcttttttattttaata
aacaTCAAGGTGCACGGACTTTTGAGACGCATCGGTAGTGTGTGAATACC
ATTGTTCAGTCAGGGTTTCTAACATTATgctaaaatatattttgtatcTT
CGATATaaatttactttgaaaaatgaatttgagtACGAGCCAGATTGATT
TTCACACTGGACAGTGTATTTTTAAGTCGGACGCAAAGACTTCAAATTTG
TATAGTAAACTCTTGAAAGAGGAgggttttttattttattttaatatttt
gtacATATTCCTGGGACTTTCCGTCTTAACTTTCCGTTGCATGAAACTTA
AGGAAATTTCATGATCTAGAAGAGCTCATTGTAGGTCGAatatggaagaa
aatttctcacCCTCGTTGAGTCACAACTACAGATATCGCCTTGACCACCT
ACTGACCTCAAATTATGgattagtttttcttttttccgaCACTGTTGAAT
GGAATCTCCTTTTTTCGACTTACTGATTACTCTCATCTTATTGTTAGCTC
ctcaaagaagaaaagaaggaaaaaaattagggaaatttgcccaaaaaaag
cTATCCCGGTTACATTACATAGAGGTGGTTTTCTCTATTGTTGTTCTTAC
ATCACCCCTTAAAGAATGTAATAATTGAATAAAATGTGAATGAAGGGAAA
ATTTTActttcctttttgaaaaaaatgtcaaagtttttcaatcttcctct
tttttcatgattttgtttGTATGTACATTTTTGTTGGGATTGCTCATTTG
AAAGAAGGAATATTTTCTGGGCTGTCGCTCTATGAGAGTGGGAAGTCACT
TATTGAATGTTCTTCCCTTTCCAGAAAGATGAGAATGTGGAACGAAATTA
GATCttaaataataattataatgaTTTGTAAATTTCTCTGGGAATATTGA
TCATTAAAGAcgtgaaaattttgattttggataaGTGAGCATATGTTTTT
AGTTCGGTAATGAATCATATTGTTGAAAGGAAAGACTTTAGGAGTTTGCT
TCAAGTCCTTTTAGCAAATTAACGTGAg
Run BLAST on NCBI

protein sequence of TCONS_00054750-protein

>TCONS_00054750-protein ID=TCONS_00054750-protein|Name=TCONS_00054750-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
GVPNGFALGSVEGRVAMQYINPTDPKDNFTFKCHRSDITSGQVQDIYAVN
DIVFHPQIGTLATVGSDGKYSFWDKDARTKLKTSENCGQSITACCFNAEG
NIFAYSTGYDWTKGHEFYNPNQKPAIYLRSCADEMKPKTKK
Run BLAST on NCBI

transcript from alignment at scaffold_245:43575..47516+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054750 ID=TCONS_00054750|Name=TCONS_00054750|organism=Clytia hemisphaerica|type=transcript|length=3942bp|location=Sequence derived from alignment at scaffold_245:43575..47516+ (Clytia hemisphaerica)
CNGGAGTGCCAAATGGATTTGCATTGGGATCAGTAGAAGGAAGAGTTGCC
ATGCAATACATAAATCCTACCGATCCGTAAGATTGTTTATTAATTCATGT
GATGCAGGTTTCATTTAACCGGTATCAAACCACGCTCTAACTATCACTAT
CCCTTTAAGTGTGcacttatttttcttttgtttacccCTCTGTACCcctt
tcaatgaaaatttaaattttattattgtatcATTAGAATAAAAAGACGAA
TATTAAAAAAGATGAATGATTGATTTTTCTATAGCACCaaaattttttac
ttcattttcaatttttttaaattattttccttaAGAGAAATCCAGTGAAA
CAGGTTGAAATGTTGTAATCCAAGATGTAAGTCCAAGATTCGTGAAAATC
CCCGAAAGTTCTTCCTCTCAAACGGTTGAgtgaaaacacaaaaatttttg
GGGTCCCCAAAAAGTCTTTTTCCtttctaagggtcgattttcgctTTTTG
GCTCGGAATTACCCGTCACTTACACTTCGCAAATCTGGTACCCCCtagaa
tcaaaacaaagattagttcACACCTAAAACGAACAAGTAAGGGAGCTCGG
TAAAAGGATTGGTATTGTTCTAAAGTGATAAATCACCATATTACGTTGAG
GTTTGAGTTGCTTGGATCAACCTAAATCAACTCGCTGTTTGATATGATTT
CACCAAAGTTATCCTTGAATTTCAATTTGCCATACATTCTTTTCAATAGA
TTTGGGTAACTAAATAATGTAAGGGTGACAATTTAATATTACAACTGTTC
ctgatctttttcttttttttttacagtaAAGACAATTTCACTTTTAAATG
CCATCGATCAGATATAACGTCCGGACAAGTTCAAGATATCTATGCTGTAA
GTATTTATTGCCCCCACTAAAACAAGGCTGCGTGGGTTTTGTTATTTATT
AGGGACTCTACGTGAATCTTGAAGGTGATTTTAGTTATTGGTGAAATTTA
TTCAACCTCACAAAGTCATTTACAGGGTAAAGAAACTGGACagattttta
tataaagtaaaattctcATGCTTTGTGCGAAATTTTATGACTCGTATACT
TAATATTCAATCTCAAAAACGTATTCAATCATTTggaattttaatattta
ttggTTGTAATGAGAATTCTGATGTTATTTCAATTATTCCAAGCCCTGGT
TTAGATGACgagttttaaggattttacttttttctgcTTTTCTTTTGAGA
CACACTGTTTATGTGTCATCATCATCTTTGCTATAGAGAATGTACAATTT
GATACGCCCTTTTTAAGGCACAATATAATAGCTGataatctttattttat
tatagGTGAATGATATCGTGTTTCATCCACAAATTGGAACACTGGCTACT
GTCGGCTCAGATGGAAAGTACAGTTTCTGGGATAAAGATGCTAGAACCAA
ACTCAAAGTATGTGTTACTTAAAACTGCCGTATGTGTTTTTGAAAGCGTC
CTTTCGATGTTATTTAGGCGTTTTTAAGGTTTATTTTATCATAACCTGAT
CCTTTCAGTATCCAAAACATAGCTTGGAATCTGAGCTCAAAGAAGACTCT
CTCTCAGGACGCGTCCCTTGTGGCCTAAGGGTTAAAGCGTCCATTTCGAT
GTTATTGAGGCGTTTTTTAAGGTTTATTTTAATTGGAAGAAACACTCGAA
TAGCAGAAGAACATCTTCCAATTTTAATGTTTActttcataatggcggat
tctCTGCTAAGTAAGAAAATCCTTGCAGAACCTTTAAAAACCTCTATTGT
AGAATGTAGGGTAGAATTTCAACACCTAAATTGAATTAAATCTGATTCAT
TTGAGTTGAAAAAGTTCTCCTTTTTTGTAGACTTCCGAAAACTGTGGACA
ATCGATCACAGCTTGTTGTTTTAACGCTGAGggaaatatttttgcatatt
ccACTGGCTATGATTGGACTAAGGTATCTCATCTCCTTTTAAAACAATTG
ATAAACCTTGGATAAACCAGTAATTGAATACTTCGTAATTGAATTATCTA
CTCGATTTATCGCTTTGCAATCCATCACTTTTCTTCCATCCATTTGATAG
CTCTTCAAAAAGTTCTCCGTAAAGTGACTCACTTTCCAAAAGTGATACAC
TATAATGGTTTTAGTAAAAGATAAATGTCCAACTCAGAAAATGTTAGAAA
AATCCCagcatctttttctttttcctgatAGTAACCTAAGGATCTTTTTC
TTTCACCTCTCAGTGTTCCCACTTTTTCTTATCGCTCAAAGAGATCCCTG
TATATGATCGGCGTCGATAAATGATTCACTACGTCACCAATCCGATATTA
TTCCAGGATTTTTTAAACGGGTTACCATCGGAATTTACCAAGCCCTTTCA
CTGTACTTTAAGTAAATTTCAACTTATTTACAACTTCTAACTTTTACTGT
TTTAGGGTCATGAATTTTACAATCCGAACCAAAAGCCAGCGATTTATTTG
AGAAGTTGTGCCGATGAGATGaaaccaaaaaccaaaaaatgaaaattaag
aaaCAAGAATGGGATGGGTTTAATAAAACTTTCTAGAGCATATTCATTCC
ATGTGATCCAtcagttttattttgaagtcgCTTGCTTTTTGGACTCATCT
GACTGATCGATGTAAACAAtggattgttttttttctgatcaATGTAGACA
ATGAATTGGTTTGTTTTTGTGAATGACTCATAACACTGTTTGAGTAGAGA
ACATTTCTCCAATAAGCTATGAACTGGTAAAAGGGTTCTGGAATCTTCAC
GAATCCTTTTCGAATTTAATGATATCATATACGCTTACCCCTATACGCGG
GAattataatttcattttaagAATCAATTTTGAATGTCTAGAgagaatct
tttttattttaataaacaTCAAGGTGCACGGACTTTTGAGACGCATCGGT
AGTGTGTGAATACCATTGTTCAGTCAGGGTTTCTAACATTATgctaaaat
atattttgtatcTTCGATATaaatttactttgaaaaatgaatttgagtAC
GAGCCAGATTGATTTTCACACTGGACAGTGTATTTTTAAGTCGGACGCAA
AGACTTCAAATTTGTATAGTAAACTCTTGAAAGAGGAgggttttttattt
tattttaatattttgtacATATTCCTGGGACTTTCCGTCTTAACTTTCCG
TTGCATGAAACTTAAGGAAATTTCATGATCTAGAAGAGCTCATTGTAGGT
CGAatatggaagaaaatttctcacCCTCGTTGAGTCACAACTACAGATAT
CGCCTTGACCACCTACTGACCTCAAATTATGgattagtttttcttttttc
cgaCACTGTTGAATGGAATCTCCTTTTTTCGACTTACTGATTACTCTCAT
CTTATTGTTAGCTCctcaaagaagaaaagaaggaaaaaaattagggaaat
ttgcccaaaaaaagcTATCCCGGTTACATTACATAGAGGTGGTTTTCTCT
ATTGTTGTTCTTACATCACCCCTTAAAGAATGTAATAATTGAATAAAATG
TGAATGAAGGGAAAATTTTActttcctttttgaaaaaaatgtcaaagttt
ttcaatcttcctcttttttcatgattttgtttGTATGTACATTTTTGTTG
GGATTGCTCATTTGAAAGAAGGAATATTTTCTGGGCTGTCGCTCTATGAG
AGTGGGAAGTCACTTATTGAATGTTCTTCCCTTTCCAGAAAGATGAGAAT
GTGGAACGAAATTAGATCttaaataataattataatgaTTTGTAAATTTC
TCTGGGAATATTGATCATTAAAGAcgtgaaaattttgattttggataaGT
GAGCATATGTTTTTAGTTCGGTAATGAATCATATTGTTGAAAGGAAAGAC
TTTAGGAGTTTGCTTCAAGTCCTTTTAGCAAATTAACGTGAg

Coding sequence (CDS) from alignment at scaffold_245:43575..47516+

>TCONS_00054750 ID=TCONS_00054750|Name=TCONS_00054750|organism=Clytia hemisphaerica|type=CDS|length=2130bp|location=Sequence derived from alignment at scaffold_245:43575..47516+ (Clytia hemisphaerica)
GGAGTGCCAAATGGATTTGCATTGGGATCAGTAGAAGGAAGAGTTGCCAT
GCAATACATAAATCCTACCGATCCtaAAGACAATTTCACTTTTAAATGCC
ATCGATCAGATATAACGTCCGGACAAGTTCAAGATATCTATGCTGTGAAT
GATATCGTGTTTCATCCACAAATTGGAACACTGGCTACTGTCGGCTCAGA
TGGAAAGTACAGTTTCTGGGATAAAGATGCTAGAACCAAACTCAAAACTT
CCGAAAACTGTGGACAATCGATCACAGCTTGTTGTTTTAACGCTGAGgga
aatatttttgcatattccACTGGCTATGATTGGACTAAGGGTCATGAATT
TTACAATCCGAACCAAAAGCCAGCGATTTATTTGAGAAGTTGTGCCGATG
AGATGaaaccaaaaaccaaaaaatgaGGAGTGCCAAATGGATTTGCATTG
GGATCAGTAGAAGGAAGAGTTGCCATGCAATACATAAATCCTACCGATCC
taAAGACAATTTCACTTTTAAATGCCATCGATCAGATATAACGTCCGGAC
AAGTTCAAGATATCTATGCTGTGAATGATATCGTGTTTCATCCACAAATT
GGAACACTGGCTACTGTCGGCTCAGATGGAAAGTACAGTTTCTGGGATAA
AGATGCTAGAACCAAACTCAAAACTTCCGAAAACTGTGGACAATCGATCA
CAGCTTGTTGTTTTAACGCTGAGggaaatatttttgcatattccACTGGC
TATGATTGGACTAAGGGTCATGAATTTTACAATCCGAACCAAAAGCCAGC
GATTTATTTGAGAAGTTGTGCCGATGAGATGaaaccaaaaaccaaaaaat
gaGGAGTGCCAAATGGATTTGCATTGGGATCAGTAGAAGGAAGAGTTGCC
ATGCAATACATAAATCCTACCGATCCtaAAGACAATTTCACTTTTAAATG
CCATCGATCAGATATAACGTCCGGACAAGTTCAAGATATCTATGCTGTGA
ATGATATCGTGTTTCATCCACAAATTGGAACACTGGCTACTGTCGGCTCA
GATGGAAAGTACAGTTTCTGGGATAAAGATGCTAGAACCAAACTCAAAAC
TTCCGAAAACTGTGGACAATCGATCACAGCTTGTTGTTTTAACGCTGAGg
gaaatatttttgcatattccACTGGCTATGATTGGACTAAGGGTCATGAA
TTTTACAATCCGAACCAAAAGCCAGCGATTTATTTGAGAAGTTGTGCCGA
TGAGATGaaaccaaaaaccaaaaaatgaGGAGTGCCAAATGGATTTGCAT
TGGGATCAGTAGAAGGAAGAGTTGCCATGCAATACATAAATCCTACCGAT
CCtaAAGACAATTTCACTTTTAAATGCCATCGATCAGATATAACGTCCGG
ACAAGTTCAAGATATCTATGCTGTGAATGATATCGTGTTTCATCCACAAA
TTGGAACACTGGCTACTGTCGGCTCAGATGGAAAGTACAGTTTCTGGGAT
AAAGATGCTAGAACCAAACTCAAAACTTCCGAAAACTGTGGACAATCGAT
CACAGCTTGTTGTTTTAACGCTGAGggaaatatttttgcatattccACTG
GCTATGATTGGACTAAGGGTCATGAATTTTACAATCCGAACCAAAAGCCA
GCGATTTATTTGAGAAGTTGTGCCGATGAGATGaaaccaaaaaccaaaaa
atgaGGAGTGCCAAATGGATTTGCATTGGGATCAGTAGAAGGAAGAGTTG
CCATGCAATACATAAATCCTACCGATCCtaAAGACAATTTCACTTTTAAA
TGCCATCGATCAGATATAACGTCCGGACAAGTTCAAGATATCTATGCTGT
GAATGATATCGTGTTTCATCCACAAATTGGAACACTGGCTACTGTCGGCT
CAGATGGAAAGTACAGTTTCTGGGATAAAGATGCTAGAACCAAACTCAAA
ACTTCCGAAAACTGTGGACAATCGATCACAGCTTGTTGTTTTAACGCTGA
GggaaatatttttgcatattccACTGGCTATGATTGGACTAAGGGTCATG
AATTTTACAATCCGAACCAAAAGCCAGCGATTTATTTGAGAAGTTGTGCC
GATGAGATGaaaccaaaaaccaaaaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034494XLOC_034494Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054750-exon-scaffold_245-1491911889:43575..43650TCONS_00054750-exon-scaffold_245-1491911889:43575..43650Clytia hemisphaericaexon
TCONS_00054750-exon-scaffold_245-1510915933:43575..43650TCONS_00054750-exon-scaffold_245-1510915933:43575..43650Clytia hemisphaericaexon
TCONS_00054750-exon-scaffold_245-1575043694:43575..43650TCONS_00054750-exon-scaffold_245-1575043694:43575..43650Clytia hemisphaericaexon
TCONS_00054750-exon-scaffold_245-1491911889:44401..44470TCONS_00054750-exon-scaffold_245-1491911889:44401..44470Clytia hemisphaericaexon
TCONS_00054750-exon-scaffold_245-1510915933:44401..44470TCONS_00054750-exon-scaffold_245-1510915933:44401..44470Clytia hemisphaericaexon
TCONS_00054750-exon-scaffold_245-1575043694:44401..44470TCONS_00054750-exon-scaffold_245-1575043694:44401..44470Clytia hemisphaericaexon
TCONS_00054750-exon-scaffold_245-1491911889:44930..45031TCONS_00054750-exon-scaffold_245-1491911889:44930..45031Clytia hemisphaericaexon
TCONS_00054750-exon-scaffold_245-1510915933:44930..45031TCONS_00054750-exon-scaffold_245-1510915933:44930..45031Clytia hemisphaericaexon
TCONS_00054750-exon-scaffold_245-1575043694:44930..45031TCONS_00054750-exon-scaffold_245-1575043694:44930..45031Clytia hemisphaericaexon
TCONS_00054750-exon-scaffold_245-1491911889:45455..45547TCONS_00054750-exon-scaffold_245-1491911889:45455..45547Clytia hemisphaericaexon
TCONS_00054750-exon-scaffold_245-1510915933:45455..45547TCONS_00054750-exon-scaffold_245-1510915933:45455..45547Clytia hemisphaericaexon
TCONS_00054750-exon-scaffold_245-1575043694:45455..45547TCONS_00054750-exon-scaffold_245-1575043694:45455..45547Clytia hemisphaericaexon
TCONS_00054750-exon-scaffold_245-1491911889:46030..47516TCONS_00054750-exon-scaffold_245-1491911889:46030..47516Clytia hemisphaericaexon
TCONS_00054750-exon-scaffold_245-1510915933:46030..47516TCONS_00054750-exon-scaffold_245-1510915933:46030..47516Clytia hemisphaericaexon
TCONS_00054750-exon-scaffold_245-1575043694:46030..47516TCONS_00054750-exon-scaffold_245-1575043694:46030..47516Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054750-proteinTCONS_00054750-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:43575..47516 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
42.9283	43.0158	59.5971	56.0004	35.7572	26.1308	25.1304	27.7732	23.7657	22.1412	15.6962	16.2287	16.3811	15.7103	21.4893	23.2082	26.3698	26.6573	13.371	15.0399	33.0942	30.5689	33.3163	30.6549	12.1166	15.6433	18.8098	19.8498	18.3632	17.7675
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00054750 vs. Swiss-Prot (Human)
Match: RAE1L (mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 3.557e-57
Identity = 95/135 (70.37%), Postives = 111/135 (82.22%), Query Frame = 3 
Query:    9 PNGFALGSVEGRVAMQYINPTDP-KDNFTFKCHRSDITSGQV-QDIYAVNDIVFHPQIGTLATVGSDGKYSFWDKDARTKLKTSENCGQSITACCFNAEGNIFAYSTGYDWTKGHEFYNPNQKPAIYLRSCADEM 407
            P GFALGS+EGRVA+ YINP +P KDNFTFKCHRS+ T+    QDIYAVN I FHP  GTLATVGSDG++SFWDKDARTKLKTSE   Q I+ACCFN  GNIFAY++ YDW+KGHEFYNP +K  I+LR+ A+E+
Sbjct:  228 PTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAEEL 362
The following BLAST results are available for this feature:
BLAST of TCONS_00054750 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAE1L3.557e-5770.37mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV... [more]
back to top