TCONS_00054746 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054746
Unique NameTCONS_00054746
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length955

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054746 ID=TCONS_00054746|Name=TCONS_00054746|organism=Clytia hemisphaerica|type=transcript|length=955bp
GTTTGAATTTGAAGACTGTATTATGATTCATgatcatccaaaaattttga
agccgcTTCGGATGTTGTCAatattttggCTTGGTCAAGTTGGTCATGTC
AACATTGTTCAAAGACAGCCATACGAACACGCACGTGTCATCATGGATGT
TCTAGCAAAACGACCGAAACTAAAGAAATGTGCCAAATTGAATCTTCATG
CTTCCCTGACAAAGttaTAAGCTACAACACTGGTTTATGGGGCAGTTGGC
GTTCATGGGAGTATTGCCCAAAAGGAACCTGGGTTGTCAAGCTACAAACA
AATATCGAAAGCCACCAAGGAGATGGCGATGACACGGCATTAAATGCGAT
CTCTTTAAGATGTAACAATGATGTTGGCACTACCATCACAAGTGGATACA
CCAATTGGGGCACTTGGCGAGCCGAGTCACAAAAATGTATTAATGGATTT
TACGGTGgaatgctaaaatttgaaagCCACCTGgggCCTGATGATGACGA
TACTTCGACCAATGCCATTCGTTTGATATGTCGAGATGACAATCAGTGGT
ACGAAAGCGGTGAAGGTGGTTGGGGTTCATGGACACAAAGCACTTACTGT
CCTGCTGGCTACAAAATTGTTGGTCTTCAAACACAGATCGAAAGTGACCA
AGGGAATGGCGACGATACTAGTTTAAATGGTGTTCGATTGTTGTGTCGAT
ATTTTGGATAATGCAATGGTGCGTGATACGGATAATTGATAAAGGGGGAG
TTTGTGCATTTTTACTTGAACTAATTATTACaaattgtatactttttttg
ttttgttttgttaattaTAGTAGAGggtattttgtaaaatcgctcgattg
ttttgttagaagcactttttatacatttttggaaccttcaaccttagaga
aatcgaaattacgatgcttctaaatttttttcggacactttgatgtgatt
ttcgg
Run BLAST on NCBI

protein sequence of TCONS_00054746-protein

>TCONS_00054746-protein ID=TCONS_00054746-protein|Name=TCONS_00054746-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
MCQIESSCFPDKVISYNTGLWGSWRSWEYCPKGTWVVKLQTNIESHQGDG
DDTALNAISLRCNNDVGTTITSGYTNWGTWRAESQKCINGFYGGMLKFES
HLGPDDDDTSTNAIRLICRDDNQWYESGEGGWGSWTQSTYCPAGYKIVGL
QTQIESDQGNGDDTSLNGVRLLCRYFG
Run BLAST on NCBI

transcript from alignment at scaffold_245:11590..14174+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054746 ID=TCONS_00054746|Name=TCONS_00054746|organism=Clytia hemisphaerica|type=transcript|length=2585bp|location=Sequence derived from alignment at scaffold_245:11590..14174+ (Clytia hemisphaerica)
GTTTGAATTTGAAGACTGTATTATGATTCATgatcatccaaaaattttga
agccgcTTCGGATGTTGTCAatattttgggtatttttgtccattttccta
aaagaaaatgggtattttagagtccacggagccttaaaatgttcttaact
tgttcttaatattttggccattgaagccttttgttcttatatagtttgtt
cttactaGATTTTTTGGCaagttttttaagcaaagtATAACTATTATCCT
GCCGCTCGTACTGTCTTCAAGAAAATTGGGAACTGATTTCTCTTTATCTT
GTATTCTTTTACCAGCTTGGTCAAGTTGGTCATGTCAACATTGTTCAAAG
ACAGCCATACGAACACGCACGTGTCATCATGGATGTTCTAGCAAAACGAC
CGAAACTAAAGAAATGTGCCAAATTGAATCTTCATGCTTCCCTGACAAAG
GTAATGCAACCCTGTCTCAAGTGAAAGTGCTTCTTAGTTTTTTAAAGAGG
AAAACAAGTACTTGACAGGGTTATTATTCACTGGGGACGAGTTTAGCCGC
ATTCGGTGAAGGGTTTTTACGTCAAATACTGAATGTGGATTTTGTTAATT
TCAattattgccccgcaggggaTTTTGTTCCTTCACGTAGtggacttgct
cgccagaaaaatattcatgtcgTTGATGTTTCTTCCGATTCTGAGCGGAC
CGCCGCTGTTAAAAAATGGTCACGCGCACCTATTGTTTTGTCTACTTTGT
TGCGACTTGTATTGATTTTAGTTCTATTCTATTCTTCTATTTATTAAATT
CTatattcttacaaagtaaaacagggacagtgcacaatatgtgcattatt
tttcttataaacacaAACTTTATTAGAATCatatcaataactcttgatag
acagccatATACTTGGTAATTAGTTCCTACAAagtaacaacaacaacaag
ggatatttaaaagatattttactgTGTGCGCCAAGCTGTACACCTCGTTT
CTTTTTTATCAGCCAATCAGTTCATTCTCAATTATGAATGCGTTCGCGAG
GCATTCATAGCGCGACcgctacttgctagtataacCCAAATAGAACGGTC
GTAGCGATAATTACTTTTGGAAGTTGCCACTGCCAATTTTCTTTAGCTCA
AATTTACTTTTCATTCAATCTACACACATATACCATCTATCTAcactaaa
aaattattttttagttaTAAGCTACAACACTGGTTTATGGGGCAGTTGGC
GTTCATGGGAGTATTGCCCAAAAGGAACCTGGGTTGTCAAGCTACAAACA
AATATCGAAAGCCACCAAGGAGGTATAGAAtctttcataaaaagttgttt
ccgAGAATTTCATGGCATGGTTTTTTAAAATCTCTTCAGTTCCTGCCAAG
TATAATTTTCATCGTTCttgaaattaatcaaaatacaaaattatctCGGG
TTATAAATTGGTTCTCAGGGCAAATTTTCTTATGAAATGGGTTCTATGGT
AAATACATGTGTTTTATATCTTATCTTAGAGCAGTTACAACTCTAGATAG
AGAGATAGGAATTTACTACTCACTATAGCTAGATACTGATAGTttttaat
aaagtttttctCTTTGTTCAATGTATGTCTCTTTTTATTCCAGATGGCGA
TGACACGGCATTAAATGCGATCTCTTTAAGATGTAACAATGATGTTGGCA
CTACCATCACAAGTGGATACACCAATTGGGGCACTTGGCGAGCCGAGTCA
CAAAAATGTATTAATGGATTTTACGGTGgaatgctaaaatttgaaagCCA
CCTGGTAATACAAATTGGACTTCTGTAACTTATCATCTCCGAAGAATCAA
AAtatcattttaaggcttttaaatTTTCCAGCAGTCAATAATTTCGTTTC
TCAAGAACCAAGAACTCAAATTTACCCCGGTTTAAAAGTCATCTTATTGA
GTtgatattttaaaagttgataTACCATTACACCTCCTTAATAAAGTTTG
ATTACATAGATCCTTCTACTCTtcttatcaaaatatttattcaaattcCA
ACCCCTCCCACGTGCTAAAATTACCTTGTAAGAAATAAACCTTATtttat
aatgaattttcaggggCCTGATGATGACGATACTTCGACCAATGCCATTC
GTTTGATATGTCGAGATGACAATCAGTGGTACGAAAGCGGTGAAGGTGGT
TGGGGTTCATGGACACAAAGCACTTACTGTCCTGCTGGCTACAAAATTGT
TGGTCTTCAAACACAGATCGAAAGTGACCAAGGGAATGGCGACGATACTA
GTTTAAATGGTGTTCGATTGTTGTGTCGATATTTTGGATAATGCAATGGT
GCGTGATACGGATAATTGATAAAGGGGGAGTTTGTGCATTTTTACTTGAA
CTAATTATTACaaattgtatactttttttgttttgttttgttaattaTAG
TAGAGggtattttgtaaaatcgctcgattgttttgttagaagcacttttt
atacatttttggaaccttcaaccttagagaaatcgaaattacgatgcttc
taaatttttttcggacactttgatgtgattttcgg

Coding sequence (CDS) from alignment at scaffold_245:11590..14174+

>TCONS_00054746 ID=TCONS_00054746|Name=TCONS_00054746|organism=Clytia hemisphaerica|type=CDS|length=2136bp|location=Sequence derived from alignment at scaffold_245:11590..14174+ (Clytia hemisphaerica)
ATGTGCCAAATTGAATCTTCATGCTTCCCTGACAAAGttaTAAGCTACAA
CACTGGTTTATGGGGCAGTTGGCGTTCATGGGAGTATTGCCCAAAAGGAA
CCTGGGTTGTCAAGCTACAAACAAATATCGAAAGCCACCAAGGAGATGGC
GATGACACGGCATTAAATGCGATCTCTTTAAGATGTAACAATGATGTTGG
CACTACCATCACAAGTGGATACACCAATTGGGGCACTTGGCGAGCCGAGT
CACAAAAATGTATTAATGGATTTTACGGTGgaatgctaaaatttgaaagC
CACCTGgggCCTGATGATGACGATACTTCGACCAATGCCATTCGTTTGAT
ATGTCGAGATGACAATCAGTGGTACGAAAGCGGTGAAGGTGGTTGGGGTT
CATGGACACAAAGCACTTACTGTCCTGCTGGCTACAAAATTGTTGGTCTT
CAAACACAGATCGAAAGTGACCAAGGGAATGGCGACGATACTAGTTTAAA
TGGTGTTCGATTGTTGTGTCGATATTTTGGATAAATGTGCCAAATTGAAT
CTTCATGCTTCCCTGACAAAGttaTAAGCTACAACACTGGTTTATGGGGC
AGTTGGCGTTCATGGGAGTATTGCCCAAAAGGAACCTGGGTTGTCAAGCT
ACAAACAAATATCGAAAGCCACCAAGGAGATGGCGATGACACGGCATTAA
ATGCGATCTCTTTAAGATGTAACAATGATGTTGGCACTACCATCACAAGT
GGATACACCAATTGGGGCACTTGGCGAGCCGAGTCACAAAAATGTATTAA
TGGATTTTACGGTGgaatgctaaaatttgaaagCCACCTGgggCCTGATG
ATGACGATACTTCGACCAATGCCATTCGTTTGATATGTCGAGATGACAAT
CAGTGGTACGAAAGCGGTGAAGGTGGTTGGGGTTCATGGACACAAAGCAC
TTACTGTCCTGCTGGCTACAAAATTGTTGGTCTTCAAACACAGATCGAAA
GTGACCAAGGGAATGGCGACGATACTAGTTTAAATGGTGTTCGATTGTTG
TGTCGATATTTTGGATAAATGTGCCAAATTGAATCTTCATGCTTCCCTGA
CAAAGttaTAAGCTACAACACTGGTTTATGGGGCAGTTGGCGTTCATGGG
AGTATTGCCCAAAAGGAACCTGGGTTGTCAAGCTACAAACAAATATCGAA
AGCCACCAAGGAGATGGCGATGACACGGCATTAAATGCGATCTCTTTAAG
ATGTAACAATGATGTTGGCACTACCATCACAAGTGGATACACCAATTGGG
GCACTTGGCGAGCCGAGTCACAAAAATGTATTAATGGATTTTACGGTGga
atgctaaaatttgaaagCCACCTGgggCCTGATGATGACGATACTTCGAC
CAATGCCATTCGTTTGATATGTCGAGATGACAATCAGTGGTACGAAAGCG
GTGAAGGTGGTTGGGGTTCATGGACACAAAGCACTTACTGTCCTGCTGGC
TACAAAATTGTTGGTCTTCAAACACAGATCGAAAGTGACCAAGGGAATGG
CGACGATACTAGTTTAAATGGTGTTCGATTGTTGTGTCGATATTTTGGAT
AAATGTGCCAAATTGAATCTTCATGCTTCCCTGACAAAGttaTAAGCTAC
AACACTGGTTTATGGGGCAGTTGGCGTTCATGGGAGTATTGCCCAAAAGG
AACCTGGGTTGTCAAGCTACAAACAAATATCGAAAGCCACCAAGGAGATG
GCGATGACACGGCATTAAATGCGATCTCTTTAAGATGTAACAATGATGTT
GGCACTACCATCACAAGTGGATACACCAATTGGGGCACTTGGCGAGCCGA
GTCACAAAAATGTATTAATGGATTTTACGGTGgaatgctaaaatttgaaa
gCCACCTGgggCCTGATGATGACGATACTTCGACCAATGCCATTCGTTTG
ATATGTCGAGATGACAATCAGTGGTACGAAAGCGGTGAAGGTGGTTGGGG
TTCATGGACACAAAGCACTTACTGTCCTGCTGGCTACAAAATTGTTGGTC
TTCAAACACAGATCGAAAGTGACCAAGGGAATGGCGACGATACTAGTTTA
AATGGTGTTCGATTGTTGTGTCGATATTTTGGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034492XLOC_034492Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054746-exon-scaffold_245-1491911889:11590..11668TCONS_00054746-exon-scaffold_245-1491911889:11590..11668Clytia hemisphaericaexon
TCONS_00054746-exon-scaffold_245-1510915933:11590..11668TCONS_00054746-exon-scaffold_245-1510915933:11590..11668Clytia hemisphaericaexon
TCONS_00054746-exon-scaffold_245-1575043694:11590..11668TCONS_00054746-exon-scaffold_245-1575043694:11590..11668Clytia hemisphaericaexon
TCONS_00054746-exon-scaffold_245-1491911889:11905..12039TCONS_00054746-exon-scaffold_245-1491911889:11905..12039Clytia hemisphaericaexon
TCONS_00054746-exon-scaffold_245-1510915933:11905..12039TCONS_00054746-exon-scaffold_245-1510915933:11905..12039Clytia hemisphaericaexon
TCONS_00054746-exon-scaffold_245-1575043694:11905..12039TCONS_00054746-exon-scaffold_245-1575043694:11905..12039Clytia hemisphaericaexon
TCONS_00054746-exon-scaffold_245-1491911889:12804..12911TCONS_00054746-exon-scaffold_245-1491911889:12804..12911Clytia hemisphaericaexon
TCONS_00054746-exon-scaffold_245-1510915933:12804..12911TCONS_00054746-exon-scaffold_245-1510915933:12804..12911Clytia hemisphaericaexon
TCONS_00054746-exon-scaffold_245-1575043694:12804..12911TCONS_00054746-exon-scaffold_245-1575043694:12804..12911Clytia hemisphaericaexon
TCONS_00054746-exon-scaffold_245-1491911889:13233..13393TCONS_00054746-exon-scaffold_245-1491911889:13233..13393Clytia hemisphaericaexon
TCONS_00054746-exon-scaffold_245-1510915933:13233..13393TCONS_00054746-exon-scaffold_245-1510915933:13233..13393Clytia hemisphaericaexon
TCONS_00054746-exon-scaffold_245-1575043694:13233..13393TCONS_00054746-exon-scaffold_245-1575043694:13233..13393Clytia hemisphaericaexon
TCONS_00054746-exon-scaffold_245-1491911889:13703..14174TCONS_00054746-exon-scaffold_245-1491911889:13703..14174Clytia hemisphaericaexon
TCONS_00054746-exon-scaffold_245-1510915933:13703..14174TCONS_00054746-exon-scaffold_245-1510915933:13703..14174Clytia hemisphaericaexon
TCONS_00054746-exon-scaffold_245-1575043694:13703..14174TCONS_00054746-exon-scaffold_245-1575043694:13703..14174Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054746-proteinTCONS_00054746-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:11590..14174 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.3881	4.06648	7.95941	5.16076	0.396694	0.510304	0.2946	0	1.3234	0	3.03104	0	0.892774	3.86838	6.87982	1.57385	6.79359e-10	2.72591	2.33162	2.48023	0	0	3.62919	0	4.70534	4.89366	0.636704	0.242452	0	1.3566
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005515VOMI
Blast
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BLAST of TCONS_00054746 vs. Swiss-Prot (Human)
Match: VMO1 (Vitelline membrane outer layer protein 1 homolog OS=Homo sapiens GN=VMO1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.413e-17
Identity = 59/163 (36.20%), Postives = 77/163 (47.24%), Query Frame = 1 
Query:  232 GLWGSWRSWEYCPKGTWVVKLQTNIESHQG-DGDDTALNAISLRC--NNDVGTT--ITSGYTNWGTWRAESQKCINGFYGGMLKFESHLGPD---DDDTSTNAIRLICRDDNQWYXXXXXXXXXXTQSTYCPAGYKIVGLQTQIESDQGNGDDTSLNGVRLLC 696
            G WG W   E CP G +       +E  QG  GDDTALN I L C   N +G T  + S   +WG W +E   C  G Y  ++ F   +       D+T+ N +R  C D  +    G         S +CP G    GLQT+I+  +G GDDT+LN  RL C
Sbjct:   42 GPWGDWAWPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVVESQSGSWGEW-SEPLWCRGGAY--LVAFSLRVEAPTTLGDNTAANNVRFRCSDGEELQGPGLSWGDFGDWSDHCPKG--ACGLQTKIQGPRGLGDDTALNDARLFC 199
The following BLAST results are available for this feature:
BLAST of TCONS_00054746 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VMO12.413e-1736.20Vitelline membrane outer layer protein 1 homolog O... [more]
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