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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054736 ID=TCONS_00054736|Name=TCONS_00054736|organism=Clytia hemisphaerica|type=transcript|length=976bp
GTATTTATTTCCAGAGGAGCCTTGGGCGGATTTTCTttgacataatttat
gaaaaggggTATTAGGTGATTAAAGTTCTCTTCATAAATTTCCTATTGAA
GAATCATAATTCAGTCATGATATCAGAAGTCAATATCGAATTTCTTACAG
GAATATTCACAATCGATGTATTAGAGTGTGATATACAGACAGTCTTGCAT
TTGAAGCAAGaaattttcagacaaaaaagGATCGCTCTTCACCTACAAAT
ACTTTTCCACGATAAGACAGCACTGAACGATGACAATCAGAAACTAACAT
CTATCAACCCTTGGCTGACGGAAAGTTCGATAACCATAAGTCTTATAGCA
AAGCAACCCAAACTCGTCACACTACGTTTGAAGGTCATTTTCCTCAAAAG
TCATCCGATTGACGTCGAAGTTCTGGAAACTGATACAGTTGAAACACTTA
AAAAGATTGTCCATGAGCGTACGAGGTACCCAATCAAAATCTTAACAGTC
GATTGCATAGGAGGCAAAGACATACCAGATAACTACCCTATCTGGGCATG
TAACTTTCCTAGTAATTTTCAACACAAGGAAGTGAGAATTGAtagaaaga
ttttaattttggtcaAAGATGGTGATATCGTAAGGAGACAAGATTATTGT
TTGGGAGACTACAATATTGAAACGTTAAATGATATTCGGCTGCTGTTACA
AAGATATTATGGACATCGAGGTGTAGTAAGAATGTTACCAAAAGATGGAT
ATTCATTGGTTACAAACACAAAAGAAATCAGAGACGAAGAGTTTTTATTT
GAAGTTATCGAGAAGAATGCTAGGAATCAAAATAGACCTTTATGTGTATT
ATTCtaaaattctgcaaaaattgTTATATTAATTACATTTAAGACATTTT
CTGTGCTAGATTTTCTACCACCATAAATTAAGACTATGTTCGCACTTAAC
AGCTCCGTTAGCAAGCAATTTTATTG Run BLAST on NCBI protein sequence of TCONS_00054736-protein >TCONS_00054736-protein ID=TCONS_00054736-protein|Name=TCONS_00054736-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
MISEVNIEFLTGIFTIDVLECDIQTVLHLKQEIFRQKRIALHLQILFHDK
TALNDDNQKLTSINPWLTESSITISLIAKQPKLVTLRLKVIFLKSHPIDV
EVLETDTVETLKKIVHERTRYPIKILTVDCIGGKDIPDNYPIWACNFPSN
FQHKEVRIDRKILILVKDGDIVRRQDYCLGDYNIETLNDIRLLLQRYYGH
RGVVRMLPKDGYSLVTNTKEIRDEEFLFEVIEKNARNQNRPLCVLF Run BLAST on NCBI transcript from alignment at scaffold_244:80793..81768 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054736 ID=TCONS_00054736|Name=TCONS_00054736|organism=Clytia hemisphaerica|type=transcript|length=976bp|location=Sequence derived from alignment at scaffold_244:80793..81768 (Clytia hemisphaerica)
CAATAAAATTGCTTGCTAACGGAGCTGTTAAGTGCGAACATAGTCTTAAT
TTATGGTGGTAGAAAATCTAGCACAGAAAATGTCTTAAATGTAATTAATA
TAAcaatttttgcagaattttaGAATAATACACATAAAGGTCTATTTTGA
TTCCTAGCATTCTTCTCGATAACTTCAAATAAAAACTCTTCGTCTCTGAT
TTCTTTTGTGTTTGTAACCAATGAATATCCATCTTTTGGTAACATTCTTA
CTACACCTCGATGTCCATAATATCTTTGTAACAGCAGCCGAATATCATTT
AACGTTTCAATATTGTAGTCTCCCAAACAATAATCTTGTCTCCTTACGAT
ATCACCATCTTtgaccaaaattaaaatctttctaTCAATTCTCACTTCCT
TGTGTTGAAAATTACTAGGAAAGTTACATGCCCAGATAGGGTAGTTATCT
GGTATGTCTTTGCCTCCTATGCAATCGACTGTTAAGATTTTGATTGGGTA
CCTCGTACGCTCATGGACAATCTTTTTAAGTGTTTCAACTGTATCAGTTT
CCAGAACTTCGACGTCAATCGGATGACTTTTGAGGAAAATGACCTTCAAA
CGTAGTGTGACGAGTTTGGGTTGCTTTGCTATAAGACTTATGGTTATCGA
ACTTTCCGTCAGCCAAGGGTTGATAGATGTTAGTTTCTGATTGTCATCGT
TCAGTGCTGTCTTATCGTGGAAAAGTATTTGTAGGTGAAGAGCGATCctt
ttttgtctgaaaatttCTTGCTTCAAATGCAAGACTGTCTGTATATCACA
CTCTAATACATCGATTGTGAATATTCCTGTAAGAAATTCGATATTGACTT
CTGATATCATGACTGAATTATGATTCTTCAATAGGAAATTTATGAAGAGA
ACTTTAATCACCTAATAccccttttcataaattatgtcaaAGAAAATCCG
CCCAAGGCTCCTCTGGAAATAAATAC Coding sequence (CDS) from alignment at scaffold_244:80793..81768 >TCONS_00054736 ID=TCONS_00054736|Name=TCONS_00054736|organism=Clytia hemisphaerica|type=CDS|length=741bp|location=Sequence derived from alignment at scaffold_244:80793..81768 (Clytia hemisphaerica)
ttaGAATAATACACATAAAGGTCTATTTTGATTCCTAGCATTCTTCTCGA
TAACTTCAAATAAAAACTCTTCGTCTCTGATTTCTTTTGTGTTTGTAACC
AATGAATATCCATCTTTTGGTAACATTCTTACTACACCTCGATGTCCATA
ATATCTTTGTAACAGCAGCCGAATATCATTTAACGTTTCAATATTGTAGT
CTCCCAAACAATAATCTTGTCTCCTTACGATATCACCATCTTtgaccaaa
attaaaatctttctaTCAATTCTCACTTCCTTGTGTTGAAAATTACTAGG
AAAGTTACATGCCCAGATAGGGTAGTTATCTGGTATGTCTTTGCCTCCTA
TGCAATCGACTGTTAAGATTTTGATTGGGTACCTCGTACGCTCATGGACA
ATCTTTTTAAGTGTTTCAACTGTATCAGTTTCCAGAACTTCGACGTCAAT
CGGATGACTTTTGAGGAAAATGACCTTCAAACGTAGTGTGACGAGTTTGG
GTTGCTTTGCTATAAGACTTATGGTTATCGAACTTTCCGTCAGCCAAGGG
TTGATAGATGTTAGTTTCTGATTGTCATCGTTCAGTGCTGTCTTATCGTG
GAAAAGTATTTGTAGGTGAAGAGCGATCcttttttgtctgaaaatttCTT
GCTTCAAATGCAAGACTGTCTGTATATCACACTCTAATACATCGATTGTG
AATATTCCTGTAAGAAATTCGATATTGACTTCTGATATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054736-exon-scaffold_244-1491911889:80793..81768 | TCONS_00054736-exon-scaffold_244-1491911889:80793..81768 | Clytia hemisphaerica | exon |
| TCONS_00054736-exon-scaffold_244-1510915933:80793..81768 | TCONS_00054736-exon-scaffold_244-1510915933:80793..81768 | Clytia hemisphaerica | exon |
| TCONS_00054736-exon-scaffold_244-1575043694:80793..81768 | TCONS_00054736-exon-scaffold_244-1575043694:80793..81768 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_244 | supercontig | scaffold_244:80793..81768 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029071 | Ubiquitin-rel_dom |
Blast
The following BLAST results are available for this feature:
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