TCONS_00054734 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054734
Unique NameTCONS_00054734
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054734 ID=TCONS_00054734|Name=TCONS_00054734|organism=Clytia hemisphaerica|type=transcript|length=371bp
CAAGACGTTGCAGATTATATAAATGAAGCCCTAAGACAACTAAATGATCA
GACTTTCTACAAGGAGTGTGACCAAGACCTCACaccaaaacataacaaaa
agatACAAGACATCATAGAATCACTGAGAAAATCCAAGCTACTAGACGAT
AAAGCCACTGAAATGCTTACAGAGACACAGCCAACGACACACCCAAAATG
CAAACCAGATAACACAGGCCGACCTGTCATCAGCTCCATCAATTGTCACA
CAGCACGTATCTCCCAATATGTTGATTATCACCTACAAGACCATGCGAAA
TCACTACCTTCATATATCAAAGACACAACAGACTTTATCAACAAAACCAA
AGATTTACATATACCAACACA
Run BLAST on NCBI

protein sequence of TCONS_00054734-protein

>TCONS_00054734-protein ID=TCONS_00054734-protein|Name=TCONS_00054734-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
QDVADYINEALRQLNDQTFYKECDQDLTPKHNKKIQDIIESLRKSKLLDD
KATEMLTETQPTTHPKCKPDNTGRPVISSINCHTARISQYVDYHLQDHAK
SLPSYIKDTTDFINKTKDLHIPT
Run BLAST on NCBI

transcript from alignment at scaffold_244:35876..36246

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054734 ID=TCONS_00054734|Name=TCONS_00054734|organism=Clytia hemisphaerica|type=transcript|length=371bp|location=Sequence derived from alignment at scaffold_244:35876..36246 (Clytia hemisphaerica)
TGTGTTGGTATATGTAAATCTTTGGTTTTGTTGATAAAGTCTGTTGTGTC
TTTGATATATGAAGGTAGTGATTTCGCATGGTCTTGTAGGTGATAATCAA
CATATTGGGAGATACGTGCTGTGTGACAATTGATGGAGCTGATGACAGGT
CGGCCTGTGTTATCTGGTTTGCATTTTGGGTGTGTCGTTGGCTGTGTCTC
TGTAAGCATTTCAGTGGCTTTATCGTCTAGTAGCTTGGATTTTCTCAGTG
ATTCTATGATGTCTTGTatctttttgttatgttttggtGTGAGGTCTTGG
TCACACTCCTTGTAGAAAGTCTGATCATTTAGTTGTCTTAGGGCTTCATT
TATATAATCTGCAACGTCTTG

Coding sequence (CDS) from alignment at scaffold_244:35876..36246

>TCONS_00054734 ID=TCONS_00054734|Name=TCONS_00054734|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at scaffold_244:35876..36246 (Clytia hemisphaerica)
TGTTGGTATATGTAAATCTTTGGTTTTGTTGATAAAGTCTGTTGTGTCTT
TGATATATGAAGGTAGTGATTTCGCATGGTCTTGTAGGTGATAATCAACA
TATTGGGAGATACGTGCTGTGTGACAATTGATGGAGCTGATGACAGGTCG
GCCTGTGTTATCTGGTTTGCATTTTGGGTGTGTCGTTGGCTGTGTCTCTG
TAAGCATTTCAGTGGCTTTATCGTCTAGTAGCTTGGATTTTCTCAGTGAT
TCTATGATGTCTTGTatctttttgttatgttttggtGTGAGGTCTTGGTC
ACACTCCTTGTAGAAAGTCTGATCATTTAGTTGTCTTAGGGCTTCATTTA
TATAATCTGCAACGTCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034482XLOC_034482Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054734-exon-scaffold_244-1491911889:35876..36246TCONS_00054734-exon-scaffold_244-1491911889:35876..36246Clytia hemisphaericaexon
TCONS_00054734-exon-scaffold_244-1510915933:35876..36246TCONS_00054734-exon-scaffold_244-1510915933:35876..36246Clytia hemisphaericaexon
TCONS_00054734-exon-scaffold_244-1575043694:35876..36246TCONS_00054734-exon-scaffold_244-1575043694:35876..36246Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054734-proteinTCONS_00054734-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_244supercontigscaffold_244:35876..36246 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.656995	0.854232	1.73573	0	0.590663	0	1.12623	1.05436	0.738183	0.685769	0.665624	0.87511	1.60214	0.756289	0.373064	1.06761	1.31521	2.35908	3.492	0.487217	0.84696	1.85903	0.251099	0.684857	0.940516	1.88862	0.600581	1.60239	0.972285	0.495302
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054734 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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