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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054729 ID=TCONS_00054729|Name=TCONS_00054729|organism=Clytia hemisphaerica|type=transcript|length=2478bpRun BLAST on NCBI protein sequence of TCONS_00054729-protein >TCONS_00054729-protein ID=TCONS_00054729-protein|Name=TCONS_00054729-protein|organism=Clytia hemisphaerica|type=polypeptide|length=777bp SKTEKNKMEAISNALKEKKQIGFDVTDPMRSFAGYTVYRLHLKIFTSPEERun BLAST on NCBI transcript from alignment at scaffold_244:16786..22736- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054729 ID=TCONS_00054729|Name=TCONS_00054729|organism=Clytia hemisphaerica|type=transcript|length=5951bp|location=Sequence derived from alignment at scaffold_244:16786..22736- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_244:16786..22736- >TCONS_00054729 ID=TCONS_00054729|Name=TCONS_00054729|organism=Clytia hemisphaerica|type=CDS|length=25674bp|location=Sequence derived from alignment at scaffold_244:16786..22736- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054729 vs. Swiss-Prot (Human)
Match: KS6C1 (Ribosomal protein S6 kinase delta-1 OS=Homo sapiens GN=RPS6KC1 PE=1 SV=2) HSP 1 Score: 176.022 bits (445), Expect = 3.214e-45 Identity = 77/166 (46.39%), Postives = 116/166 (69.88%), Query Frame = 3
Query: 1815 LDESEVQVWAAQIALALMDLHSKGVLCRDLNPRNILVDTNGNIKLTYFSQVDGIDYSLDDNAVQCLYTSPEVDGVFEPTSSTDWWSYGAILFELLTGEALYSCHPNGISRRSVITLPRRVSNEACALLAGLLKYDSKERLGSGPTGNEEIKAHPFFHGINWESLKK 2312
+ E +Q WAA++ +AL LH +G++CRDLNP NIL++ G+I+LTYFS+ ++ S D +A++ +Y +PEV + E T + DWWS GA+LFELLTG+ L CHP GI+ + + +P VS EA +L+ LL+++ ERLG+G G E+IK+HPFF ++W L +
Sbjct: 901 IPEGCIQRWAAEMVVALDALHREGIVCRDLNPNNILLNDRGHIQLTYFSRWSEVEDSCDSDAIERMYCAPEVGAITEETEACDWWSLGAVLFELLTGKTLVECHPAGINTHTTLNMPECVSEEARSLIQQLLQFNPLERLGAGVAGVEDIKSHPFFTPVDWAELMR 1066 HSP 2 Score: 96.6709 bits (239), Expect = 2.225e-20 Identity = 71/204 (34.80%), Postives = 111/204 (54.41%), Query Frame = 3
Query: 996 DYVFQASVAMSNAIEQEELGNVEAAFDMYKFGIGLLLRGAQTDKNTDRIEAVRRKTAQYLLRAETLYKLCFXXXXXXXXXXXXXXTIPTDSMSLDSKWRFR-----LSDVKVIGVIDKVMLVQKVFSKEDDVFIMKVLHKQGAEYKRTVSNKKANKSKRNLYNCRFMTALVNCVETKTGVYLLLEHVHGGRLWDLLGLQIFTNR 1592
DY+ +A + A+++EE + EAA D Y+ G+ LLL G Q + + R EAV+R+TA+YL+RAE++ L + + D+ + P S+S W R L +V+GVIDKV+LV ++ + FI+K L K +EY R N+K R + N M L + ++ V+L+L+H GG+LW + F NR
Sbjct: 238 DYLEKAGELIKLALKKEEEDDYEAASDFYRKGVDLLLEGVQGESSPTRREAVKRRTAEYLMRAESISSL-------YGKPQLDDVSQPPGSLSSRPLWNLRSPAEELKAFRVLGVIDKVLLVMD--TRTEQTFILKGLRK-SSEYSR---NRK-TIIPRCVPN---MVCLHKYIISEESVFLVLQHAEGGKLWSYIS--KFLNR 422 The following BLAST results are available for this feature:
BLAST of TCONS_00054729 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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