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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054725 ID=TCONS_00054725|Name=TCONS_00054725|organism=Clytia hemisphaerica|type=transcript|length=688bp
ACGTCATATATATTTACAGCAGATCGACTGGAGAGATCGTCCGTGCCCAG
GCAGATCACTTTGAAGCTTCTTCGGGAAATGGCAAGATGAGTGTTGTAAT
TAGGAACACTGGTCATGTTACTGCAGAATTTACTGTTACCGTTGAAAAGT
GTACCAAAGGATTGCACATGATAGGCGAACGATCAATGTCTATTTATGCT
CAAAAGACAACCCCTATTAGTTTCAGTCTCATGACAACAGGCTTTAAAGG
AGGGGCTTTTGAATGTGAAGGTATGCAATATACCCTTTCCGAGTTTTCta
gttttcgcgaattttattCCTCCTTCAAATGTTAAGGTTGACAATATATG
ATTGTGATAGATAATAATGATAATTGGAGATGGCTTAAAGAATTTTAGTT
CGGCTACTTGTCTGGTTGGCTTTTTATAgacgattttatagcgattctag
cggccgtagcatgaaggtaaaGCAGGTTCGATTCCCAGCCCAAAATGGta
attgatgcctctctgcttgatgctcagcaattaaagagacggattaaggg
taagtggagaaatgaTTGGCGCTTAgggtagacagctagagaaaaggaAG
CCTTAGGGTCGCCCTCGGGTCagcctcgactgcggtcgcaaacatACTTA
CTTTATAGACCAGGATGATTAAGATTATTGactaaaaa Run BLAST on NCBI transcript from alignment at scaffold_244:155412..157856+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054725 ID=TCONS_00054725|Name=TCONS_00054725|organism=Clytia hemisphaerica|type=transcript|length=2445bp|location=Sequence derived from alignment at scaffold_244:155412..157856+ (Clytia hemisphaerica)
ACGTCATATATATTTACAGCAGGTATAAGACAAGAATTCTTTAATTTAAA
GTACAGACTGTCTGTTAACGtcatttttatagatttttatcaTTCACTAT
CTACTGCAACCGAAATTTATAGTACGctaaaaaaatcaattattttaaGA
ATATATGAAACGGACGCCATTCGAAATTTTCGTATTCATCTTTACCTGTT
TTCGATAAATATTTGAGGTTCCTTAAAGGTCTTTGTTATTTTGTTCGATT
TAAAAAACGAGGACCTTTTCTATATAGCGCCAACCTTCGACGAGCACCGC
AGCTTTATAAaatatgctgacaaagcatatTTAAAGAAGCTCAGGATGAT
ATTTTCGACCatcaattttcccaaaatttaaaaaaatcaaagttttagAT
ATGTCCGACCATCACATGAGGATATTTCCGATCATCAAAGATATTTCCGT
CCGTCTAAGGAAAAAAAATACGCAGCACCGCAACCCAAACATTTGAAgaa
atatggtaaaaaaaatttaaaatattttttgtcaccTTTTAGATCGACTG
GAGAGATCGTCCGTGCCCAGGCAGATCACTTTGAAGCTTCTTCGGGAAAT
GGCAAGATGAGTGTTGTAATTAGGAACACTGGTCATGTTACTGCAGAATT
TACTGTAAGTAATATTATTAATAAGGTGTTTTCACTTTCGATGGCATTAA
TTTGGAATTGTTtggctttttttgttttttaaattgtcttgggtcaattt
aaaaattatatttctttaaaaaaattaaaaacattacaTTCTGTTTCACG
CCTAACAGACGATTATCCGATGTgagtaaaaaaattttgaacaaattctG
TTGTATGAAACATACAGGGTGTCCGTAAAAAAACATCGAGTCCAAACACA
ACTATGAGTCATGTACAGTATTCAGAAAATCGTATTTGAATTCTCCCTCT
TTTTACTTTGATTTTTCAAAGACGTATATTTTATGCAACAAGGGGGTAAT
AAAAAGCGCTATCGATTAAGTAATACTTTATCACACGGTGCAGAGTACAT
GCTTCTAATTACAAAATTCTGCATAATTCACCAACATTTCAAGAATGTGT
GCTAATAATTTACTGTATAAAATCAGAGGAATGTAAAGAGATGGAAAAAC
AGCTTTTCTGATTACTCAAAGTTCAACGATCACTTCTATTGAAAATTCTA
TTGTAAAAAGGTTGATTAGGTCATTAAATGAAAGTCCAGAAAAGACGGCT
CACCATACAAATCGGACGGTTTCTACATGATTTGACGATAAAAATGAAAA
TTTGTTTTTCCTTTTTAGCCGATTACTAGTTAAATTTTTGAAAATAAGGA
GCAATATTTTTACCAATGTACTGTATAGCAAAATAAATTTTTAACATAAT
GATATTAAATTGGTTCTTGTAAAACTGTCAGAAGTCGAGTAAAATCAAGA
TGAAGTTATAATTTTCTCGAGCTCTAGCTTACAATATTATGGTGCGGTCA
TGATGCGGTTATATCAGTAGAATCGCTAGGAAATTCTGATCAAGAAGATA
TAGGTACCTTTTCGTATAGGAGAGGTGTACCCAAAATAtgagccctaaaa
gtttgcgcataatcaggcttgaaacaaaagaattttgtcacaacacgcta
attatgcagatttttcaTAGCGATAACAAAAgcaacctatttactcgaca
taaactcccttaagggcaagagacctggtatatgacgagccgtttttaca
ttgttttcaagaagctgtttttcatctcgttacattcctctgataaaatc
cattttccttCTTAGATGAAAAAGCTTGCTTTGAACACTGAATGGAACTT
TTTGATTCAATCATTACAttctttcttctattttttgttAGGTTACCGTT
GAAAAGTGTACCAAAGGATTGCACATGATAGGCGAACGATCAATGTCTAT
TTATGCTCAAAAGACAACCCCTATTAGTTTCAGTCTCATGACAACAGGCT
TTAAAGGAGGGGCTTTTGAATGTGAAGGTATGCAATATACCCTTTCCGAG
TTTTCtagttttcgcgaattttattCCTCCTTCAAATGTTAAGGTTGACA
ATATATGATTGTGATAGATAATAATGATAATTGGAGATGGCTTAAAGAAT
TTTAGTTCGGCTACTTGTCTGGTTGGCTTTTTATAgacgattttatagcg
attctagcggccgtagcatgaaggtaaaGCAGGTTCGATTCCCAGCCCAA
AATGGtaattgatgcctctctgcttgatgctcagcaattaaagagacgga
ttaagggtaagtggagaaatgaTTGGCGCTTAgggtagacagctagagaa
aaggaAGCCTTAGGGTCGCCCTCGGGTCagcctcgactgcggtcgcaaac
atACTTACTTTATAGACCAGGATGATTAAGATTATTGactaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054725-exon-scaffold_244-1491911889:155412..155433 | TCONS_00054725-exon-scaffold_244-1491911889:155412..155433 | Clytia hemisphaerica | exon |
| TCONS_00054725-exon-scaffold_244-1510915933:155412..155433 | TCONS_00054725-exon-scaffold_244-1510915933:155412..155433 | Clytia hemisphaerica | exon |
| TCONS_00054725-exon-scaffold_244-1575043694:155412..155433 | TCONS_00054725-exon-scaffold_244-1575043694:155412..155433 | Clytia hemisphaerica | exon |
| TCONS_00054725-exon-scaffold_244-1491911889:155954..156065 | TCONS_00054725-exon-scaffold_244-1491911889:155954..156065 | Clytia hemisphaerica | exon |
| TCONS_00054725-exon-scaffold_244-1510915933:155954..156065 | TCONS_00054725-exon-scaffold_244-1510915933:155954..156065 | Clytia hemisphaerica | exon |
| TCONS_00054725-exon-scaffold_244-1575043694:155954..156065 | TCONS_00054725-exon-scaffold_244-1575043694:155954..156065 | Clytia hemisphaerica | exon |
| TCONS_00054725-exon-scaffold_244-1491911889:157303..157856 | TCONS_00054725-exon-scaffold_244-1491911889:157303..157856 | Clytia hemisphaerica | exon |
| TCONS_00054725-exon-scaffold_244-1510915933:157303..157856 | TCONS_00054725-exon-scaffold_244-1510915933:157303..157856 | Clytia hemisphaerica | exon |
| TCONS_00054725-exon-scaffold_244-1575043694:157303..157856 | TCONS_00054725-exon-scaffold_244-1575043694:157303..157856 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_244 | supercontig | scaffold_244:155412..157856 + |
Blast
The following BLAST results are available for this feature:
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