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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054706 ID=TCONS_00054706|Name=TCONS_00054706|organism=Clytia hemisphaerica|type=transcript|length=1516bp
GTTTCAATCCAAATGATTGCATTTGGGAACTGGATTGAGAAATGAAAATG
TAGATAAAtgaaatagatttttaaattttctcttattctaaaatgtcatt
aatcttattagttgaaaaaataaataaatgtttgGTACATGAATATTGTG
TATATACTAAATAGTTTTAAGTTAGTCAATTAATTGTATATAATAAATAC
TAaatataaaattgttaattacaTCACTTAGTCACAAAAATTAATATTGT
TCATAAATAAGATAAATTTTAAAGGATATTGTTAGTTAAAGTAAGGAAAT
TACTAGAACAAGAAGACTGATCCCCACCGGTCACAAAATCTTAAcaagtc
actgagacaggggtgtaattataAACCGAATTTTCGTAAAGACCTGAAAA
AGTTTACTTGCACTTTACGTATTTACAATGGTAAAAACGgggattgaaat
tttatttgtaaagccagattgacattatTTCATTGTTATCgaggtctgaa
tcgctgcttCAAAAATGCTAGAGCTTGCAAAAACATTGCAGTTATTCAGA
CCAATCATCATGTTACGTCACTTGATTGTTTCGTTTCTTTTATAAATTAG
ATTTTAACAACCCGAAAGTTTGCGTGGCAAAATGTTGATAAAGAACTGAA
ATGAATTGCCTGTATTTTTAAGGGATTTGTGTATTGTTTTAAGCAAACAG
ATTTATGCATAGATGATCGACTTTTACTTAGACgtaaaaattaaacttta
aaaaaatatgatattaaataattctttttttcgcAATTACTTGATTCAAT
TAAAACAATTACTTGgtttttatatttaattttatattgTTTACCTTTGG
GACATGAAGGCGTGAAATGTGAtgaattgtttttgatttgTCAACAAATA
TGTCAATTACGTGTATTGATGTAAAGTGATGTCATCAATCTGAAAGAAAA
TCAGATATAAATTCAGTCTACGCAACAGAACTTTCAAATATGTAGAAGAA
GTCTCGTATCCTAAAGAGTAGTATAGTACTTAAGATTTCGCCCGTCTTAA
AACGTCAAATCAAACAAGTGTGCttacatATatatttttaatacaaaata
tGTATGACTGGATGACTGGAAAACTTGGCAATAAAAAactctcattttca
aaaagacagAAAAATACTAGCACCGAACCGACCCTCCAAAAGGGTAGTTC
TTTAGAAGATTTCGCCCGTCTTAAAACGTCAAATCAAACAAGTGTGCttg
tataaatttgttgatgcTAAATATGTATGACTGGATTACAACGTactaat
aaaaaacttttttctggttATTACACTACAAAGTGAAATTATCGATCAAA
ATAAATATGCTAACGAAAATACTTATCTTTATTGTCCATTTGGTTTTTGA
TGTATGCTTTGGAAGTTGATACGTTCTCAGTGGCGAGGATAGTCCAAAGA
AATAATCTGCGAGCTAAGATCTAAGATAGAGAAAACTTTGTCAGTCTTGA
ATATTTCCTAGTTAAA Run BLAST on NCBI transcript from alignment at scaffold_244:2000..3648+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054706 ID=TCONS_00054706|Name=TCONS_00054706|organism=Clytia hemisphaerica|type=transcript|length=1649bp|location=Sequence derived from alignment at scaffold_244:2000..3648+ (Clytia hemisphaerica)
GTTTCAATCCAAATGATTGCATTTGGGAACTGGATTGAGAAATGAAAATG
TAGATAAAtgaaatagatttttaaattttctcttattctaaaatgtcatt
aatcttattagttgaaaaaataaataaatgtttgGTACATGAATATTGTG
TATATACTAAATAGTTTTAAGTTAGTCAATTAATTGTATATAATAAATAC
TAaatataaaattgttaattacaTCACTTAGTCACAAAAATTAATATTGT
TCATAAATAAGATAAATTTTAAAGGATATTGTTAGTTAAAGTAAGGAAAT
TACTAGAACAAGAAGACTGATCCCCACCGGTCACAAAATCTTAAcaagtc
actgagacaggggtgtaattataAACCGAATTTTCGTAAAGACCTGAAAA
AGTTTACTTGCACTTTACGTATTTACAATGGTAAAAACGgggattgaaat
tttatttgtaaagccagattgacattatTTCATTGTTATCgaggtctgaa
tcgctgcttCAAAAATGCTAGAGCTTGCAAAAACATTGCAGTTATTCAGA
CCAATCATCATGTTACGTCACTTGATTGTTTCGTTTCTTTTATAAATTAG
ATTTTAACAACCCGAAAGTTTGCGTGGCAAAATGTTGATAAAGAACTGAA
ATGAATTGCCTGTATTTTTAAGGGATTTGTGTATTGTTTTAAGCAAACAG
ATTTATGCATAGATGATCGACTTTTACTTAGACgtaaaaattaaacttta
aaaaaatatgatattaaataattctttttttcgcAATTACTTGATTCAAT
TAAAACAATTACTTGgtttttatatttaattttatattgTTTACCTTTGG
GACATGAAGGCGTGAAATGTGAtgaattgtttttgatttgTCAACAAATA
TGTCAATTACGTGTATTGATGTAAAGTGATGTCATCAATCTGAAAGAAAA
TCAGATATAAATTCAGTCTACGCAACAGAACTTTCAAATATGTAGAAGAA
GTCTCGTATCCTAAAGAGTAGTATAGTACTTAAGATTTCGCCCGTCTTAA
AACGTCAAATCAAACAAGTGTGCttacatatattttttaatacaaaaNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCACCGAACCGACCCTCCAA
AAGGGTAGTTCTTTAGAAGATTTTGCCCGTCTTAAAACGTCAAATCAAAC
AAGTGTGCTTACATatatttttaatacaaaatatGTATGACTGGATGACT
GGAAAACTTGGCAATAAAAAactctcattttcaaaaagacagAAAAATAC
TAGCACCGAACCGACCCTCCAAAAGGGTAGTTCTTTAGAAGATTTCGCCC
GTCTTAAAACGTCAAATCAAACAAGTGTGCttgtataaatttgttgatgc
TAAATATGTATGACTGGATTACAACGTactaataaaaaacttttttctgg
ttATTACACTACAAAGTGAAATTATCGATCAAAATAAATATGCTAACGAA
AATACTTATCTTTATTGTCCATTTGGTTTTTGATGTATGCTTTGGAAGTT
GATACGTTCTCAGTGGCGAGGATAGTCCAAAGAAATAATCTGCGAGCTAA
GATCTAAGATAGAGAAAACTTTGTCAGTCTTGAATATTTCCTAGTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054706-exon-scaffold_244-1491911889:2000..3078 | TCONS_00054706-exon-scaffold_244-1491911889:2000..3078 | Clytia hemisphaerica | exon |
| TCONS_00054706-exon-scaffold_244-1510915933:2000..3078 | TCONS_00054706-exon-scaffold_244-1510915933:2000..3078 | Clytia hemisphaerica | exon |
| TCONS_00054706-exon-scaffold_244-1575043694:2000..3078 | TCONS_00054706-exon-scaffold_244-1575043694:2000..3078 | Clytia hemisphaerica | exon |
| TCONS_00054706-exon-scaffold_244-1491911889:3212..3648 | TCONS_00054706-exon-scaffold_244-1491911889:3212..3648 | Clytia hemisphaerica | exon |
| TCONS_00054706-exon-scaffold_244-1510915933:3212..3648 | TCONS_00054706-exon-scaffold_244-1510915933:3212..3648 | Clytia hemisphaerica | exon |
| TCONS_00054706-exon-scaffold_244-1575043694:3212..3648 | TCONS_00054706-exon-scaffold_244-1575043694:3212..3648 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_244 | supercontig | scaffold_244:2000..3648 + |
Blast
The following BLAST results are available for this feature:
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