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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054663 ID=TCONS_00054663|Name=TCONS_00054663|organism=Clytia hemisphaerica|type=transcript|length=2000bp
CGAAATTTTTCCCACATTTAGTTCTCGGTGAAGGAGAAAACCACCAAAAA
CAAAAGTCCAAAATGTTTGTTTTCTCCCTCCACTTACTCAGGTTAGtctt
ttttgctgaaaaaagtttacaaaacaAATTCGAAATAGTTTAGAAAAACA
TCTTGTAGGCTCACCTACGAGAtattatgaaaaacattttcgaaaaacaa
aaatCGAAAAGAACCTGAGGCTTTATTATTTAATAAAATAGGGGTTGCTT
CTGATGACCATATTGTCTGAGGAAACTGTTCGCAATAAAGATAGGATGTT
GTTGTTTGTTCTAGGGAATTGAAGACAGCAAACTACAATAAATAGATTCC
TNGTTGTTGTTTGTTCTAGGGAATTGAAGACAGCAAAATACAATAAATAG
ATCCCCGTTGCATCCAGTATCAAAGGTTCGAAAAATCGAGAAATAATAAC
AAAGGAATTATGGAAGAAAGACTCTGGCTGTAGTTTTTCCCTGTCAGAAC
ATTCGCGTGGAAAGCAAAATTGTCAATAATTGGAGGAAGGCTAACGTAAT
TGCTTTTCAATAGCAGTATAATAAGCAGTGGATCAAAGAACAAAAGGAAC
TATCTGATTGCATAATTAAGACGTAAGTCCTACATAATTATTGTGTTCAG
TCATAATGAGAAAAATCATTGATGCGTGACAGAGATATAAGTAGTGACGG
ATGACAGTCATTACAttcaaagaaatttcattaGCATGTCAGTCAGTAGT
GTTTGTTGAAGAGAGAGAATAGAATACCTTGTATGAAAGTTGCGCTGATG
TTTCATTGAGAATTCGAGGAACAAATAAACAATCAAGCAGAATGACAGCT
GAAAAGAAATCTATGGAAGATATCGGACACATTGTCGACCACGTCACAAA
ATCCGTCGAAAAACAAGTGCGTCGCCAATCATCCAAAAAGAAAACATCAC
GAATATTCAACCGACAAAAATACGACAAACTAGACGAAACCGACCAAGAT
ACGATTATCGAAGCTATCCGAACGATCGGTGAATCGTCGTTAATTTTCAT
GCCGACTGATTCACCGACATCGACGCCGACTTCATCGCGACGGAAAATGG
GCATCTCAGAGACGTGTGAAATTCAACGAAAATTGGTTCAGAAAATTCTG
AAGAATTACATGATTACTGAGCACATGAAAGAGTATTATTTCACTAATTA
GCAATTGGACGAAATAGCGGGGTTGGCATTCTCTGACTTAATGACCCGAC
TAATTAACGAGTAATCATCTACGTATTAGCGAAACAATgaagaaaacatt
ttgaattgAGTATGAGAGAAATGTAAGGAGGGTATTGAAAATTGGAACTG
TACATATTGTATATAATGATATCAATAAGAAGaaagaaagatattttatc
CCAAAACTattataaatttttgtaaataggtTTAAGAGGCATAGTATTAT
TGATTTGAGGATACAGAAacttttatgatattttatttattattgatCAT
ATTAAGGTATTTTTAATGAACCTTAATGAACAAACGAAAGATAACAGGAT
TTATTTTTCGACGAAAATAACACCATTAAtgaaatttgttcttattatCA
AGCTTTGTTTTTGTATCCCTGTGGACCAGGCCACAACTATTTAGTAAACA
TAGAATTAAAACCAAAAGTAAATTGGGAGGATAGACGATCTCTTCGATCT
TGCGGGAAAGATTTCATAAAAGACATCCTATAATTATTTCCTTTGAAAGA
CTTTCGAAAGAAAAACGCATTGCAACATCCATCTTTAATACCCGAGGGAA
gcttaaatttcgaaaaaagagTCTAGAATCGTTCTTTGTAGGTAGATGAG
TAGGCTTAATTCCGCTGAAGAAACAATACATCCTagaagatttttaaatc
aagttcCTTGTTGGGAAAAGCTCCGAATTTTCTTTCAAGAATTTGAACaa
tacacgtttgtttttttataagaacgtcaaaaattttcgaagccttcgga Run BLAST on NCBI protein sequence of Incomplete protein sequence >TCONS_00054663-protein ID=TCONS_00054663-protein|Name=Incomplete protein sequence|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MTAEKKSMEDIGHIVDHVTKSVEKQVRRQSSKKKTSRIFNRQKYDKLDET
DQDTIIEAIRTIGESSLIFMPTDSPTSTPTSSRRKMGISETCEIQRKLVQ
KILKNYMITEHMKEYYFTN Run BLAST on NCBI transcript from alignment at scaffold_243:892396..894736- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054663 ID=TCONS_00054663|Name=TCONS_00054663|organism=Clytia hemisphaerica|type=transcript|length=2341bp|location=Sequence derived from alignment at scaffold_243:892396..894736- (Clytia hemisphaerica)
CGAAATTTTTCCCACATTTAGTTCTCGGTGAAGGAGAAAACCACCAAAAA
CAAAAGTCCAAAATGTTTGTTTTCTCCCTCCACTTACTCAGGTTAGTCTT
TTTTGCTGAAAAAAGTTTACAAAACAAATTCGAAATAGTTTAGAAAAACA
TCTTGTAGGCTCACCTACGAGATATTATGAAAAACATTTTCGAAAAACAA
AAATCGAAAAGAACCTGAGGCTTTATTATTTAATAAAATAGGGGTTGCTT
CTGATGACCATATTGTCTGAGGAAACTGTTCGCAATAAAGATAGGATGTT
GTTGTTTGTTCTAGGGAATTGAAGACAGCAAACTACAATAAATAGATTCC
TNGTTGTTGTTTGTTCTAGGGAATTGAAGACAGCAAAATACAATAAATAG
ATCCCCGTTGCATCCAGTATCAAAGGTTCGAAAAATCGAGAAATAATAAC
AAAGGAATTATGGAAGAAAGACTCTGGCTGTAGTTTTTCCCTGTCAGAAC
ATTCGCGTGGAAAGCAAAATTGTCAATAATTGGAGGAAGGCTAACGTAAT
TGCTTTTCAATAGCAGTATAATAAGCAGTGGATCAAAGAACAAAAGGAAC
TATCTGATTGCATAATTAAGACGTAAGTCCTACATAATTATTGTGTTCAG
TCATAATGAGAAAAATCATTGATGCGTGACAGAGATATAAGTAGTGACGG
ATGACAGTCATTACATTCAAAGAAATTTCATTAGCATGTCAGTCAGTAGT
GTTTGTTGAAGAGAGAGAATAGAATACCTTGTATGAAAGTTGCGCTGATG
TTTCATTGAGTAAGTGGGAATCTTCATTTTCGATTGCACTTCGTACCGAT
TTTAATAGTGGCATCATGTGTTCTTTCTTCGTTTTCATAACACCTGTTCA
AAAGACAAAAAAAAAAATATTGGTTTTGTTTTCAACTGCTAGTATTTTTC
GAGATTTTTACTGATAATATTTTTCTTCTCTTTTCCGGAAAAATCGTGAT
TTGCATCTAACTTTCCTATTATGGAAATAATTTTTCTTCTTTTAAAGTAC
TCTTTCAATTTCAAGTGTATAAGTAGCAGTGTAAGGCAGTGGTCCAAGCA
GTGAAGAATGTGGACAGGAAAATAACCTCATACTTTTTCTTTTAATTCAG
GAATTCGAGGAACAAATAAACAATCAAGCAGAATGACAGCTGAAAAGAAA
TCTATGGAAGATATCGGACACATTGTCGACCACGTCACAAAATCCGTCGA
AAAACAAGTGCGTCGCCAATCATCCAAAAAGAAAACATCACGAATATTCA
ACCGACAAAAATACGACAAACTAGACGAAACCGACCAAGATACGATTATC
GAAGCTATCCGAACGATCGGTGAATCGTCGTTAATTTTCATGCCGACTGA
TTCACCGACATCGACGCCGACTTCATCGCGACGGAAAATGGGCATCTCAG
AGACGTGTGAAATTCAACGAAAATTGGTTCAGAAAATTCTGAAGAATTAC
ATGATTACTGAGCACATGAAAGAGTATTATTTCACTAATTAGCAATTGGA
CGAAATAGCGGGGTTGGCATTCTCTGACTTAATGACCCGACTAATTAACG
AGTAATCATCTACGTATTAGCGAAACAATGAAGAAAACATTTTGAATTGA
GTATGAGAGAAATGTAAGGAGGGTATTGAAAATTGGAACTGTACATATTG
TATATAATGATATCAATAAGAAGAAAGAAAGATATTTTATCCCAAAACTA
TTATAAATTTTTGTAAATAGGTTTAAGAGGCATAGTATTATTGATTTGAG
GATACAGAAACTTTTATGATATTTTATTTATTATTGATCATATTAAGGTA
TTTTTAATGAACCTTAATGAACAAACGAAAGATAACAGGATTTATTTTTC
GACGAAAATAACACCATTAATGAAATTTGTTCTTATTATCAAGCTTTGTT
TTTGTATCCCTGTGGACCAGGCCACAACTATTTAGTAAACATAGAATTAA
AACCAAAAGTAAATTGGGAGGATAGACGATCTCTTCGATCTTGCGGGAAA
GATTTCATAAAAGACATCCTATAATTATTTCCTTTGAAAGACTTTCGAAA
GAAAAACGCATTGCAACATCCATCTTTAATACCCGAGGGAAGCTTAAATT
TCGAAAAAAGAGTCTAGAATCGTTCTTTGTAGGTAGATGAGTAGGCTTAA
TTCCGCTGAAGAAACAATACATCCTAGAAGATTTTTAAATCAAGTTCCTT
GTTGGGAAAAGCTCCGAATTTTCTTTCAAGAATTTGAACAATACACGTTT
GTTTTTTTATAAGAACGTCAAAAATTTTCGAAGCCTTCGGA Coding sequence (CDS) from alignment at scaffold_243:892396..894736- >TCONS_00054663 ID=TCONS_00054663|Name=TCONS_00054663|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_243:892396..894736- (Clytia hemisphaerica)
ATGACAGCTGAAAAGAAATCTATGGAAGATATCGGACACATTGTCGACCA
CGTCACAAAATCCGTCGAAAAACAAGTGCGTCGCCAATCATCCAAAAAGA
AAACATCACGAATATTCAACCGACAAAAATACGACAAACTAGACGAAACC
GACCAAGATACGATTATCGAAGCTATCCGAACGATCGGTGAATCGTCGTT
AATTTTCATGCCGACTGATTCACCGACATCGACGCCGACTTCATCGCGAC
GGAAAATGGGCATCTCAGAGACGTGTGAAATTCAACGAAAATTGGTTCAG
AAAATTCTGAAGAATTACATGATTACTGAGCACATGAAAGAGTATTATTT
CACTAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054663-exon-scaffold_243-1575043694:893928..894736 | TCONS_00054663-exon-scaffold_243-1575043694:893928..894736 | Clytia hemisphaerica | exon |
| TCONS_00054663-exon-scaffold_243-1575043694:892396..893586 | TCONS_00054663-exon-scaffold_243-1575043694:892396..893586 | Clytia hemisphaerica | exon |
| TCONS_00054663-exon-scaffold_243-1510915933:893928..894736 | TCONS_00054663-exon-scaffold_243-1510915933:893928..894736 | Clytia hemisphaerica | exon |
| TCONS_00054663-exon-scaffold_243-1510915933:892396..893586 | TCONS_00054663-exon-scaffold_243-1510915933:892396..893586 | Clytia hemisphaerica | exon |
| TCONS_00054663-exon-scaffold_243-1491911889:893928..894736 | TCONS_00054663-exon-scaffold_243-1491911889:893928..894736 | Clytia hemisphaerica | exon |
| TCONS_00054663-exon-scaffold_243-1491911889:892396..893586 | TCONS_00054663-exon-scaffold_243-1491911889:892396..893586 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:892396..894736 - |
Blast
The following BLAST results are available for this feature:
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