TCONS_00054651 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054651
Unique NameTCONS_00054651
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2203

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054651 ID=TCONS_00054651|Name=TCONS_00054651|organism=Clytia hemisphaerica|type=transcript|length=2203bp
ACTTAAATAACCGACCACAATGGAAAAGCTTGTTTTGACCACTGAGgctt
aaaaagtaaaaataagcaaacaacACATCAATCACATAATTCAACATGTA
CGACGGTGATGGTGACTCAACAATGGAACCAACAACAGAAAATACAACAA
CTCTGGAAAAATACCCATGTTTTGTCAAAATTGCCGAAGATGAAACActa
gaaaatttcattgaattacCAACTGAAAAATGTGGTAGTATGCTGTTATC
TACTATTCAAGGACAATACCCAAATGCTATTGGTTTGAAGTATAAAAGTC
CTTCAGGATCATGGAGAGGAGTACGATTATCAGAAAGCATGCTTGATCCA
CCTTTTGAAGGTTGGGGAGAAGCCGTCTATTCCATCACACTACCAAAATC
AGAGAAAGACACCGGGAAACGTAAAATGGTGGAGGAGTCGCCCAGTAGAG
AGCCAGAGGCTAAATTAGTCAAGACTggatctgaaaatgaatatctCTCA
GATTTGATTGTTTTGGGTTTACCTTACAAAGCACGAGAAGACAACGTGAA
AGATTATTTTCAGCAGTTTGGTGAATTGGCTATGCACGagatcAAGTATG
ACCCAGTAACAAAGCAATCACGTGGGTTTGCTTTCATTCGTTTCAAGACA
GTAGCTGCAGCACagaaaactctcaaaacaactCACACCATCCTTGGTCG
TAGGTGTGAAGTCAGATTACCGAAGAAAAAGGAAGAAGTTCCCTTACGTA
AATTGTTCATTGGACGATTACCAGATGACACCAAGCAAGAAGACCTTGAT
AGTTATTTCGGACAGTTCGGAGAGTTGACGGACGTCTATATACCGACGCC
ATACCGAAGTTTTGGATTTGTGACGTTCGCTTCTTCAGATGTTGCCAGGA
CGGTGCTTTTACAAAGTCAACACACGTTAAAAGGTCAACGTATAAACGTG
ACAAATGCCGAACCAAAAGACGAAAAGGGTGGAAAATCCTCACGTAGCGG
ACGTGGTAATTCGCGCTCGTCTTCGCGGCGCCATCACGAGCATTCGTTTG
ATTTCAAAGACATGCGAGAACTGATGTACAACTCTAGATCTGGCCTACAA
TATCAACATGGGTCATCGAGGCGTTCTCCGCCACGTGAGGTTCTTGATCA
AAGACCAAGTATCCCATACACTACTCACCCAGCAGCAACCAATCCTTACC
AACCGAATGACTATAGGACGCTTCAAGCAGGTGGATACGGAGCACCACCA
GATATGAGACCGGCATACCCACCTACTGGACAGCAGCAACAATTTGACTC
TCGCGAGATGCAATATGGTGCTTACTGGAGTACTAGCAAGTAATTTGAGT
GACGTGTGCAGACTGTGTCCAGAGGATGCGAAATTTGTGTGAAATAATGG
TGATTGATCGAGTGGTGAACCGAGTTATTATTTAGCGAGTTGATCCGAGT
GGAACGGAGTTGCGAGGGgaacatttattttttataaaagaaaagcaACT
TTTCtctttacttttttaatttacaAAGCTTCTACAACCAATTTATGGGT
GGTCTGCGAGATTAAATGTATATagactttgaaatcttttacaaaaaatt
gtctttcgaaaactaatttgaattttttttgatttatacTTATAGTGATT
AGAAATAAGAGAAGGGCATAGCATATATCTTAGATTGGGGTTATATTTTA
ATGGAAAGGATGTGGAATCTCTCTCCCGAAAATGAAGAATGATACAACTT
TGATACAACCCTAGAGTAAAGTAGTCTGAAAACCGTGAAAAATTATGACT
GGGCAAAAATTTATTAGTTCTTGTAGAAGAGAATTACAACCGTCATTTGA
TATACActgaaaaataatgttttgagagactgaattttaCTGATTTCAAG
AATCTTACAGAAAACGCGAAATGAAATGTAATTAAGAAAAGTGCTTTGTT
TGTTCGATTATATATGGTGGATGGAGCAGAGATGAATGAGGGTGCGTGAT
AAACTGAATGAGGGTACTCTCAAAGAGATTATCTGACTGACAGTGAAGAG
AATGACGTAAGTGTATGCATTTAATGAGAAATTTTACTGAAATGATATTT
AGTTGGTTTGATACAATTTGACATATATATTTTGCCTGTAGAATCTATGG
ACAAAAGATCTCAAACCGTTTGATTATCCCTTTGAATTTTAATACTCTAT
GCC
Run BLAST on NCBI

transcript from alignment at scaffold_243:510789..515988-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054651 ID=TCONS_00054651|Name=TCONS_00054651|organism=Clytia hemisphaerica|type=transcript|length=5200bp|location=Sequence derived from alignment at scaffold_243:510789..515988- (Clytia hemisphaerica)
ACTTAAATAACCGACCACAATGGAAAAGCTTGTTTTGACCACTGAGGTAT
GTAAAAGTGCTTTAAATTTGCCTGTGTTTTTGCAAAGGTTTATTTTTCCA
TTTTTCTTGTTTAAAAATTTTTGTTTTCAAACTGAACCCCCTGGAAATAA
GAAAAACCGAAAAAAATGTATTTAAATGCATTTACTCGCTAGGCCTTTTT
TACAGTTTTTTTCCTTCATTTTTGTAGAAAAAATGTTGTTTGTAGCGTTT
TTATTCCTTTTTTTTTTGTACAGGTACTTTTTCCCCGGTAAAGGTCACAA
ATTGGAATTTTTTTAAACAAACTTTGTAATACAATCTTTTGAACCATTGA
AATTAGCTTACACTGAAAATTTCAAAACTTAAACTGACTTTTATTTTCAA
ATGTTTGGAACGATCAATTTTATGGAATGGAAAGTTTTATTTCACATCCT
GTGCATGTTAATGTTAATAGCCATTCAAGGATATTATAATGAGCTTTTTA
GCGCACTGATGGGCTAAATCCAAACAATTGCACCAAAATCAAGAGTCAAT
CAGAGGCAAATTGTTTCGCTGCTATTTTTCACATCTTTGCCCCAAGTGCC
ACCAGGTGCATTAATTATCCGTCGCTATGTAACTAGAGAATAAATTTATT
CAAAGATGGCAGAAGGCATAATTTATGTTGTACTGATTGAAAGTGTAATA
TAAAGACCTAGAATAAGGCTCTGTTGTCGTCGGAATTTTACCTAGAAAGA
CCACTGTTTCGGGCCCGTATTAGAAGGAACGTGGTCTCGTTTTTACACAT
TGCCTGACACAAGTTAGCTGAAGGAGCCACTTTTCACACTTTTTTAAAAT
GTTTCAACATGATGGTGGCAGAAGTGGGAACAAGGGCAAAAGTGGCAAAA
GTGTAAGCGAAACAATTTGCCTCTCATAAACATTGGAACCCAGTCGCTTT
TGTTTTCGTTTTCAAGCAAAAAGCAAGGCGGCTTTGATTGTTTTGGCTGA
ACAACCAGGTCAGATATCACAATAGCCATATTCCTTTAGAGCAGAGTATG
GTTTGCGCAGAATGAATAAAAGCAACCTTTTATTTGTTTAATTCAATATA
AATGACTTATTTATCAAAATGAATGACTATTAATTAGATTTTTTTATCAA
AATATCTTATATTTGAATTATTTCCCAGGCTTAAAAAGTAAAAATAAGCA
AACAACACATCAATCACATAATTCAACATGTACGACGGTGATGGTGACTC
AACAATGGAACCAACAACAGAAAATACAACAACTCTGGAAAAATACCCAT
GTTTTGTCAAAATTGCCGAAGATGAAACACTAGAAAATTTCATTGAATTA
CCAACTGAAAAATGTGGTAGTATGCTGTTATCTACTATTCAAGGACAATA
CCCAAATGCTATTGGTTTGAAGTATAAAAGTCCTTCAGGATCATGGAGAG
GAGTACGATTATCAGAAAGCATGCTTGATCCACCTTTTGAAGGTTGGGGA
GAAGCCGTCTATTCCATCACACTACCAAAATCAGAGAAAGGTTAGATGTT
TATTCATGTAGTTCTTTGTTCCTTTTTTTCAGGAATATTTCTAATCCCTA
CCCTTTTTTTCAAAAATACAGAAACATATTCGATGATACGATGTAGAGGT
TGTTGATTTGAAACAGACTTAGTTGTAATTTAAATTGATATCATTATCGT
ATCAATGTGAAACATGAAATCTTAGTGTGATTTTTAGAGTAGTGGGTAGT
CAAAGANCTTATTTATGCACTTCTTTGTTCTTTTTTTCAGGAATATTTCT
TGTCCCCTGCCCTTTTTTTCAAAAATACAGAAACATATTCGATGATACGA
TGTAGAGGTTGTTGATTTGAAACAGACTTAGTTGTAATTCAAATTGATAT
CATTATCGTATCAATGTGAAACATGAAATCTTAGTGTAATTTTTAGAGTA
GTGGGTAGTCAAAGAAAAGATCTCTACCCAAATTTTAACAGGCTACAAAC
CATGGGATGAAGCATTTGTAGGAAAAGGGGTCCCAACCAAGAAGACTACT
TATACTTTCATACTCTCTTGAAGGACAAGACGAAAGAGCTTATCTTTAAA
ACCTCGTATTGCGTCCGTCGTTATTTTTAGGCTTTTATTGAAACTCACAA
TTTCTTCTGTTTTAGACACCGGGAAACGTAAAATGGTGGAGGAGTCGCCC
AGTAGAGAGCCAGAGGCTAAATTAGTCAAGACTGGATCTGAAAATGAATA
TCTCTCAGATTTGATTGTTTTGGGTTTACCTTACAAAGCACGAGAAGACA
ACGTGAAAGATTATTTTCAGCAGTTTGGTGAATTGGCTATGCACGAGGTA
AATAAATAAATTCATAATACCAAAATTACAAAAAACATTTACTTTACAAT
CTATTAAATCGTTGTTTTTCGAATTATCACATTGTTAATGTCAACAACCA
CTTTATTTTTAAGGTAACTTGAATCTTTACTAAACTGAATACTAAAGGAA
TGGTACCTGAATCTAAAACATTAAAACCAAACGGTTCTGATATCAAAGTC
CAGTTTCATCGTTCTGATTGTTTTCTTTTCTTTTTTAAGATCAAGTATGA
CCCAGTAACAAAGCAATCACGTGGGTTTGCTTTCATTCGTTTCAAGACAG
TAGCTGCAGCACAGAAAACTCTCAAAACAACTCACACCATCCTTGGTCGT
AGGTGTGAAGTCAGATTACCGAAGAAAAAGGTATTGTAGTTTGAACTAAT
TTACAATGAATTTTTAAACTTTTTTTTTTTTTCTGCAAGCATGTTGGAAA
TGTATCAAATATTAAGCAGATTTTCAATAGGTAAAAGTTGGCTATTGAAA
ATTTATTAACCTGAGGCGATGTATTCAACGACGCGAAGTGGAGTATTGAC
TAATAAGCAGTATCACGAATCGAAAATACGAAATAAATTAGATTAAAACA
AGAACCTCTTAAGCCACTAGTTATTGGCTGGTTAAAGTTTTCAAACACAG
TAATGGTTTATTTGTGGGTTTGAATTTGTAGCTTTTGTGTCCTCTATGTA
TAGGATCAAATAAGTGAAACCAACAGTTTTCAACTGGATCAATAGACGGT
AAATCAATTCTTTACCAATTTGTTTTTCATCTTTTGTTAAGTTACGCAAA
CGTTCGAATCTGTAAAGGCGATCCATTACGCATATCGAACGTTTGTTTCC
ATAATGGCGGAAATTATGTAACTTAACAAAAACATGAAAAACCTCTTCCA
GTTTAAGTAAAAATATTGATTTTTTGTTTCTTCAGGAAGAAGTTCCCTTA
CGTAAATTGTTCATTGGACGATTACCAGATGACACCAAGCAAGAAGACCT
TGATAGTTATTTCGGACAGTTCGGAGAGTTGACGGACGTCTATATACCGA
CGCCATACCGAAGTTTTGGATTTGTGACGTTCGCTTCTTCAGATGTTGCC
AGGACGGTGCTTTTACAAAGTCAACACACGTTAAAAGTAAAAGCTTCCTC
TTTTGCGCTCGGTTGTCGTTCTTTTTAGGGTCTTAAAGTGAAGAGGGTGA
CAATAACGAAGATTTAGAATTCTCTCCACCTGGCTGAGTTTTTTTTCCAA
CCTATGAAGAATTTCCTATCCTATTGTAGAAGTTTTAACAGTTTTTTCAA
ATTATAGCTGTGCATGAATAGCTCTAGTTCTGCTCGAAGTATTTTTGAAC
ACTTTTTGTATTAACCCCTTTTATTTCATCATAATCATATTCACTCCTCA
CGTTTGTTTCAATCAAGGGTCAACGTATAAACGTGACAAATGCCGAACCA
AAAGACGAAAAGGGTGGAAAATCCTCACGTAGCGGACGTGGTAATTCGCG
CTCGTCTTCGCGGCGCCATCACGAGCATTCGTTTGATTTCAAAGACATGC
GAGAACTGATGTACAACTCTAGATCTGGCCTACAATATCAACATGGGTCA
TCGAGGCGTTCTCCGCCACGTGAGGTTCTTGATCAAAGACCAAGTATCCC
ATACACTACTCACCCAGCAGCAACCAATCCTTACCAACCGAATGACTATA
GGACGCTTCAAGCAGGTGGATACGGAGCACCACCAGATATGAGACCGGCA
TACCCACCTACTGGACAGCAGCAACAATTTGACTCTCGCGAGATGCAATA
TGGTGCTTACTGGAGTACTAGCAAGTAATTTGAGGTATGAATAAGTACCC
TTTTGTTAGTAAATTCTAAAATTACTATTTCTGAGATTTGTGTGTTGTTT
GAAATTATAATGAGTACTACAAACAATTCTGAATAATTAAGTATTTAATA
TAATAATGATTTATGTAAAAATTTTGTGTGCGTGTTTTTGTTTCAGTGAC
GTGTGCAGACTGTGTCCAGAGGATGCGAAATTTGTGTGAAATAATGGTGA
TTGATCGAGTGGTGAACCGAGTTATTATTTAGCGAGTTGATCCGAGTGGA
ACGGAGTTGCGAGGGGAACATTTATTTTTTATAAAAGAAAAGCAACTTTT
CTCTTTACTTTTTTAATTTACAAAGCTTCTACAACCAATTTATGGGTGGT
CTGCGAGATTAAATGTATATAGACTTTGAAATCTTTTACAAAAAATTGTC
TTTCGAAAACTAATTTGAATTTTTTTTGATTTATACTTATAGTGATTAGA
AATAAGAGAAGGGCATAGCATATATCTTAGATTGGGGTTATATTTTAATG
GAAAGGATGTGGAATCTCTCTCCCGAAAATGAAGAATGATACAACTTTGA
TACAACCCTAGAGTAAAGTAGTCTGAAAACCGTGAAAAATTATGACTGGG
CAAAAATTTATTAGTTCTTGTAGAAGAGAATTACAACCGTCATTTGATAT
ACACTGAAAAATAATGTTTTGAGAGACTGAATTTTACTGATTTCAAGAAT
CTTACAGAAAACGCGAAATGAAATGTAATTAAGAAAAGTGCTTTGTTTGT
TCGATTATATATGGTGGATGGAGCAGAGATGAATGAGGGTGCGTGATAAA
CTGAATGAGGGTACTCTCAAAGAGATTATCTGACTGACAGTGAAGAGAAT
GACGTAAGTGTATGCATTTAATGAGAAATTTTACTGAAATGATATTTAGT
TGGTTTGATACAATTTGACATATATATTTTGCCTGTAGAATCTATGGACA
AAAGATCTCAAACCGTTTGATTATCCCTTTGAATTTTAATACTCTATGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034424XLOC_034424Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054651-exon-scaffold_243-1575043694:515943..515988TCONS_00054651-exon-scaffold_243-1575043694:515943..515988Clytia hemisphaericaexon
TCONS_00054651-exon-scaffold_243-1575043694:514449..514810TCONS_00054651-exon-scaffold_243-1575043694:514449..514810Clytia hemisphaericaexon
TCONS_00054651-exon-scaffold_243-1575043694:513642..513823TCONS_00054651-exon-scaffold_243-1575043694:513642..513823Clytia hemisphaericaexon
TCONS_00054651-exon-scaffold_243-1575043694:513259..513399TCONS_00054651-exon-scaffold_243-1575043694:513259..513399Clytia hemisphaericaexon
TCONS_00054651-exon-scaffold_243-1575043694:512503..512703TCONS_00054651-exon-scaffold_243-1575043694:512503..512703Clytia hemisphaericaexon
TCONS_00054651-exon-scaffold_243-1575043694:511805..512221TCONS_00054651-exon-scaffold_243-1575043694:511805..512221Clytia hemisphaericaexon
TCONS_00054651-exon-scaffold_243-1575043694:510789..511642TCONS_00054651-exon-scaffold_243-1575043694:510789..511642Clytia hemisphaericaexon
TCONS_00054651-exon-scaffold_243-1510915933:515943..515988TCONS_00054651-exon-scaffold_243-1510915933:515943..515988Clytia hemisphaericaexon
TCONS_00054651-exon-scaffold_243-1510915933:514449..514810TCONS_00054651-exon-scaffold_243-1510915933:514449..514810Clytia hemisphaericaexon
TCONS_00054651-exon-scaffold_243-1510915933:513642..513823TCONS_00054651-exon-scaffold_243-1510915933:513642..513823Clytia hemisphaericaexon
TCONS_00054651-exon-scaffold_243-1510915933:513259..513399TCONS_00054651-exon-scaffold_243-1510915933:513259..513399Clytia hemisphaericaexon
TCONS_00054651-exon-scaffold_243-1510915933:512503..512703TCONS_00054651-exon-scaffold_243-1510915933:512503..512703Clytia hemisphaericaexon
TCONS_00054651-exon-scaffold_243-1510915933:511805..512221TCONS_00054651-exon-scaffold_243-1510915933:511805..512221Clytia hemisphaericaexon
TCONS_00054651-exon-scaffold_243-1510915933:510789..511642TCONS_00054651-exon-scaffold_243-1510915933:510789..511642Clytia hemisphaericaexon
TCONS_00054651-exon-scaffold_243-1491911889:515943..515988TCONS_00054651-exon-scaffold_243-1491911889:515943..515988Clytia hemisphaericaexon
TCONS_00054651-exon-scaffold_243-1491911889:514449..514810TCONS_00054651-exon-scaffold_243-1491911889:514449..514810Clytia hemisphaericaexon
TCONS_00054651-exon-scaffold_243-1491911889:513642..513823TCONS_00054651-exon-scaffold_243-1491911889:513642..513823Clytia hemisphaericaexon
TCONS_00054651-exon-scaffold_243-1491911889:513259..513399TCONS_00054651-exon-scaffold_243-1491911889:513259..513399Clytia hemisphaericaexon
TCONS_00054651-exon-scaffold_243-1491911889:512503..512703TCONS_00054651-exon-scaffold_243-1491911889:512503..512703Clytia hemisphaericaexon
TCONS_00054651-exon-scaffold_243-1491911889:511805..512221TCONS_00054651-exon-scaffold_243-1491911889:511805..512221Clytia hemisphaericaexon
TCONS_00054651-exon-scaffold_243-1491911889:510789..511642TCONS_00054651-exon-scaffold_243-1491911889:510789..511642Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:510789..515988 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.82274	2.10391	4.35286	3.5781	42.7578	32.8637	25.0327	25.5315	7.81703	12.7771	5.5167	4.1788	5.23042	3.7446	5.36219	7.37148	16.3231	10.2443	1.44408	2.60795	6.8273	6.85005	6.52092	6.07085	12.687	10.8176	6.21225	4.28018	6.28005	5.80508
Blast
[Close]
BLAST of TCONS_00054651 vs. Swiss-Prot (Human)
Match: TADBP (TAR DNA-binding protein 43 OS=Homo sapiens GN=TARDBP PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.972e-60
Identity = 113/271 (41.70%), Postives = 165/271 (60.89%), Query Frame = 3 
Query:  171 FVKIAEDETLENFIELPTEKCGSMLLSTIQGQYPNAIGLKYKSP-SGSWRGVRLSESMLDPPFEGWGEAVYSITLPKSEKDTGKRKMVEESPSREPEAKLVKTGSENEYLSDLIVLGLPYKAREDNVKDYFQQFGELAMHEIKYDPVTKQSRGFAFIRFKTVAAAQKTLKTTHTILGRRCEVRLP--KKKEEVPL--RKLFIGRLPDDTKQEDLDSYFGQFGELTDVYIPTPYRSFGFVTFASSDVARTVLLQSQHTLKGQRINVTNAEPK 968
            ++++ EDE  E  IE+P+E  G++LLST+  Q+P A GL+Y++P S   RGVRL E +L  P  GWG  VY +  PK  K    RKM E   S       VK     +  SDLIVLGLP+K  E ++K+YF  FGE+ M ++K D  T  S+GF F+RF       K +   H I GR C+ +LP  K+ ++ PL  RK+F+GR  +D  +++L  +F Q+G++ DV+IP P+R+F FVTFA   +A++ L      +KG  ++++NAEPK
Sbjct:    4 YIRVTEDENDEP-IEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNK----RKMDETDAS-----SAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQS-LCGEDLIIKGISVHISNAEPK 263
The following BLAST results are available for this feature:
BLAST of TCONS_00054651 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TADBP1.972e-6041.70TAR DNA-binding protein 43 OS=Homo sapiens GN=TARD... [more]
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