TCONS_00054623 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054623
Unique NameTCONS_00054623
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length804

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054623 ID=TCONS_00054623|Name=TCONS_00054623|organism=Clytia hemisphaerica|type=transcript|length=804bp
NNATGTCAAAGCAGGTGTTCATATGGCCAAAGAAAAGTTTGGTGAACTCA
ATGCCTTGGTAAACTGCGCTGGAATTGGTATTGCTGTCACAACTTTAGAC
AAAAAGGGAGCTGCTCACCCCTTAGATTTGTTCGAAAAAGTTATCAATGT
CAATTTGGTTGGTTCATTCAACTGCATTCGTATCTTGGCTGAAGAGATGG
CAACCAATGAGCCAGATGTGGACGGGGGTCGTGGTGTTATGATCAACACT
GCAAGTTGTGCTGCATTTGAAGGGCAAAGAGGACAAGCTGCTTATTCTGC
CTCAAAAGGTGGCATTGTTGGAATGACTATCCCTATCGCACGTGATTTAG
CTAAGCATGGAATTCGTGTTAACACAATTGCACCAGGTTTGTTTTTGACA
CCTCTGTTGGAATCACTCCCTGACAAAGTACAAAACGCGTTAGCCAAAAC
CGTTCCTTTCCCTCAACGTCTTGGACATCCTGATGAATTTGCACAGATGG
CCGAACAAATCATCGACAACCGAATGATGAATGGATCCACTGTTCGTTTG
GATGGAGCCATTAGAATGCAACCTTGAACATAACAAAACGTCTAAAACAT
CATTTACATAATGATgacatgttattattttttaacctttttttcttttt
gatttttctattttctggacaaaataataattttggaATAAATTTTTAGT
GAAGAtaacataatttaaaaacaatcaaaatcgaaataaatataaagaaa
ataacCTTCTTTCACTTTCTTCACCCCGAAAGCTTTCTAATAAGGCAAAT
AAAT
Run BLAST on NCBI

protein sequence of TCONS_00054623-protein

>TCONS_00054623-protein ID=TCONS_00054623-protein|Name=TCONS_00054623-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
XVKAGVHMAKEKFGELNALVNCAGIGIAVTTLDKKGAAHPLDLFEKVINV
NLVGSFNCIRILAEEMATNEPDVDGGRGVMINTASCAAFEGQRGQAAYSA
SKGGIVGMTIPIARDLAKHGIRVNTIAPGLFLTPLLESLPDKVQNALAKT
VPFPQRLGHPDEFAQMAEQIIDNRMMNGSTVRLDGAIRMQP
Run BLAST on NCBI

transcript from alignment at scaffold_243:357433..360238-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054623 ID=TCONS_00054623|Name=TCONS_00054623|organism=Clytia hemisphaerica|type=transcript|length=2806bp|location=Sequence derived from alignment at scaffold_243:357433..360238- (Clytia hemisphaerica)
NNATGTCAAAGCAGGTGTTCATATGGCCAAAGAAAAGTTTGGTGAACTCA
ATGCCTTGGTAAACTGCGCTGGAATTGGTATTGCTGTCACAACTTTAGAC
AAAAAGGGAGCTGCTCACCCCTTAGATTTGTTCGAAAAAGTTATCAATGT
AAGTTATTAATATTTTTGGACTTGAATACATCATTTGTTGTGTGGGCAGG
TGTGGGACTGTCCAGGGATTTTGAGTTACACGTAGTTTTAACAACTTTCC
AAAAATATAATTCAAAAGAATTGCATGTTGCAGCTGTGAACTATAACTTG
ATTAAGATTAAAAATGATTGCATACATAACAGAAACTGGGGATGTGAAAG
CCGAAAGGGTCATAGTTTTGGCCTTTAGGGGGAGGGTTCAAAATTTCTCA
AAGGGTTTTGAGAAACCAATCCACTTTCTTAGAAAGTTCCAAAGGACCAA
AAAAGCAAAATCTCCTTCCTCAAATTGTTGAGACTGAAAATCTATCTAAC
AGTTCCAAACATATCAAAAGATTCTCACCAAGGTTTGATTTTTATTTTTT
TTGTTTGAACATTCCCGTCACCCCTTAAATATCGTAAATGAGTTTAGTAT
ATTCCCTTGTATTCCCTTGTATATATCAACTACTTAAAGGAATCTCCAAA
TTACAAAAATATTTGATTTATCCCATTCCATGAAAATAGCATAATCATGT
TTGAGGATCAAAAATATTTAGCCAAAGCTGATGATAAAAGTTTACTTTTT
TCGACTAGAATTCATGACCATAATGACCAGGGAATTTATGTTTTTCAAAA
AATTTTCTTTGACTAAGTAATCTTTTCAATTTTATAAGGTCAATTTGGTT
GGTTCATTCAACTGCATTCGTATCTTGGCTGAAGAGATGGCAACCAATGA
GCCAGATGTGGACGGGGGTCGTGGTGTTATGATCAACACTGCAAGTTGTG
CTGCATTTGAAGGGCAAAGAGGACAAGCTGCTTATTCTGCCTCAAAAGGT
GGCATTGTTGGAATGACTATCCCTATCGCACGTGATTTAGCTAAGCATGG
AATTCGTGTTAACACAATTGCACCAGGTAAATTCCATAAAATGATTTAGC
CCTTTTTCTTAGACCACACTATTTAGTGGATGTAGCCTATCGTCGACAAA
CCTTCAATTGATATTTATACAACATCTTCACATTTTGGCTACAAAAAAAA
AACAGGATATTTTGGTAGAGTTTTTTAACCTGTTCAACTCACAACTTACC
TTCATAATTGTTACTGGTTTTTTAAATGATAATAATCCTTCAAAGTTTGG
CCTATGTATGACTCGCTTGTCCTGAAAAAGGGGAGTGAGTTCTCGCTTAA
GTTGGCTAGTATCATGGATTTATTATAGAGACTCTGGATAAACATCGAAT
GAAACGGTGGAGAGCAAAGTATTGTCTTTCTATTGTTTCAGAAAACAATC
ATTGTACAGGCTTTGTCCGCAAAGAACAACTGTCATGGCGCCTCTTTCTA
AAAAGTTCTTTAACTTTTTCTGATCGTACTTTTGCTGGCTAAAAGTTTGA
AAATAAATGCTAGAATAACAAGCGAATACATTTATGAAATCTGGTGTGAG
AAAAACATCATCAGACGAGTAAAATCAAACAAAATGCTTATAATGACACG
AAATTTTGAATTGGGAATATCTTTCCAATATTTCTCCGAGAAGAGCTGAG
ATTGACATATATTAGACGTGATTCTCATAGCTCCACTGTGGTATGAAAAT
CTTTTGGTGGCACGTGGTGGCACGGTGGATTGTTTGAGGTTGAAGTTTAA
AAATTTCTGGTGTCAATATTCAATTTCTTATACATAGCATGTTTTTGCAT
CTAAAACGTCTTAACGACGTATAATTAGTAATTAACTAGATGAGTTTGAA
TCTCGGGGGAGAACTTAAAGTCTCATTTGGGAATTGGATAAGTGTATTTT
GATGAGAAATGCAATTATAATGCTACAAAAAATCATTTAATGGGGGAAGG
AGGGTGAACAATAATGTCATTACTGCGGACAAGGCTTGTACATGAGAAAT
TGGTAAAAATCAGCCCATTGTTTACCAGTGTCTATAATAATTCCATGCTA
GTATCTAGAAGATCATTTCGCCAAAGTCATTTTTTACGACATTATGACGT
CAGAGAGAACTTGTTGAAAATAGGGTATCGCCATGATTCAACTCTCTAAA
AATCAAATGTGTGTGTTCAATTAACAAAATCTTTTGATAAAACATGTTTG
TTTTGTTCCTTTAAATTTTATTGGTCGAAAGGTAATCAACATGACTCTCG
ATGGCGACGAATGGTGGAACTTTTTAGTGATAAGTCCTTGAAGATAAATA
AATTCTCAATATTCCATACTTTCTCTTCTTCCATATAGGTTTGTTTTTGA
CACCTCTGTTGGAATCACTCCCTGACAAAGTACAAAACGCGTTAGCCAAA
ACCGTTCCTTTCCCTCAACGTCTTGGACATCCTGATGAATTTGCACAGAT
GGCCGAACAAATCATCGACAACCGAATGATGAATGGATCCACTGTTCGTT
TGGATGGAGCCATTAGAATGCAACCTTGAACATAACAAAACGTCTAAAAC
ATCATTTACATAATGATGACATGTTATTATTTTTTAACCTTTTTTTCTTT
TTGATTTTTCTATTTTCTGGACAAAATAATAATTTTGGAATAAATTTTTA
GTGAAGATAACATAATTTAAAAACAATCAAAATCGAAATAAATATAAAGA
AAATAACCTTCTTTCACTTTCTTCACCCCGAAAGCTTTCTAATAAGGCAA
ATAAAT

Coding sequence (CDS) from alignment at scaffold_243:357433..360238-

>TCONS_00054623 ID=TCONS_00054623|Name=TCONS_00054623|organism=Clytia hemisphaerica|type=CDS|length=1728bp|location=Sequence derived from alignment at scaffold_243:357433..360238- (Clytia hemisphaerica)
GTTTGTTTTTGACACCTCTGTTGGAATCACTCCCTGACAAAGTACAAAAC
GCGTTAGCCAAAACCGTTCCTTTCCCTCAACGTCTTGGACATCCTGATGA
ATTTGCACAGATGGCCGAACAAATCATCGACAACCGAATGATGAATGGAT
CCACTGTTCGTTTGGATGGAGCCATTAGAATGCAACCTTGAGTCAATTTG
GTTGGTTCATTCAACTGCATTCGTATCTTGGCTGAAGAGATGGCAACCAA
TGAGCCAGATGTGGACGGGGGTCGTGGTGTTATGATCAACACTGCAAGTT
GTGCTGCATTTGAAGGGCAAAGAGGACAAGCTGCTTATTCTGCCTCAAAA
GGTGGCATTGTTGGAATGACTATCCCTATCGCACGTGATTTAGCTAAGCA
TGGAATTCGTGTTAACACAATTGCACCAGNATGTCAAAGCAGGTGTTCAT
ATGGCCAAAGAAAAGTTTGGTGAACTCAATGCCTTGGTAAACTGCGCTGG
AATTGGTATTGCTGTCACAACTTTAGACAAAAAGGGAGCTGCTCACCCCT
TAGATTTGTTCGAAAAAGTTATCAATGTTTGTTTTTGACACCTCTGTTGG
AATCACTCCCTGACAAAGTACAAAACGCGTTAGCCAAAACCGTTCCTTTC
CCTCAACGTCTTGGACATCCTGATGAATTTGCACAGATGGCCGAACAAAT
CATCGACAACCGAATGATGAATGGATCCACTGTTCGTTTGGATGGAGCCA
TTAGAATGCAACCTTGAGTCAATTTGGTTGGTTCATTCAACTGCATTCGT
ATCTTGGCTGAAGAGATGGCAACCAATGAGCCAGATGTGGACGGGGGTCG
TGGTGTTATGATCAACACTGCAAGTTGTGCTGCATTTGAAGGGCAAAGAG
GACAAGCTGCTTATTCTGCCTCAAAAGGTGGCATTGTTGGAATGACTATC
CCTATCGCACGTGATTTAGCTAAGCATGGAATTCGTGTTAACACAATTGC
ACCAGNATGTCAAAGCAGGTGTTCATATGGCCAAAGAAAAGTTTGGTGAA
CTCAATGCCTTGGTAAACTGCGCTGGAATTGGTATTGCTGTCACAACTTT
AGACAAAAAGGGAGCTGCTCACCCCTTAGATTTGTTCGAAAAAGTTATCA
ATGTTTGTTTTTGACACCTCTGTTGGAATCACTCCCTGACAAAGTACAAA
ACGCGTTAGCCAAAACCGTTCCTTTCCCTCAACGTCTTGGACATCCTGAT
GAATTTGCACAGATGGCCGAACAAATCATCGACAACCGAATGATGAATGG
ATCCACTGTTCGTTTGGATGGAGCCATTAGAATGCAACCTTGAGTCAATT
TGGTTGGTTCATTCAACTGCATTCGTATCTTGGCTGAAGAGATGGCAACC
AATGAGCCAGATGTGGACGGGGGTCGTGGTGTTATGATCAACACTGCAAG
TTGTGCTGCATTTGAAGGGCAAAGAGGACAAGCTGCTTATTCTGCCTCAA
AAGGTGGCATTGTTGGAATGACTATCCCTATCGCACGTGATTTAGCTAAG
CATGGAATTCGTGTTAACACAATTGCACCAGNATGTCAAAGCAGGTGTTC
ATATGGCCAAAGAAAAGTTTGGTGAACTCAATGCCTTGGTAAACTGCGCT
GGAATTGGTATTGCTGTCACAACTTTAGACAAAAAGGGAGCTGCTCACCC
CTTAGATTTGTTCGAAAAAGTTATCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034416XLOC_034416Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054623-proteinTCONS_00054623-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054623-exon-scaffold_243-1575043694:360091..360238TCONS_00054623-exon-scaffold_243-1575043694:360091..360238Clytia hemisphaericaexon
TCONS_00054623-exon-scaffold_243-1575043694:359163..359400TCONS_00054623-exon-scaffold_243-1575043694:359163..359400Clytia hemisphaericaexon
TCONS_00054623-exon-scaffold_243-1575043694:357433..357850TCONS_00054623-exon-scaffold_243-1575043694:357433..357850Clytia hemisphaericaexon
TCONS_00054623-exon-scaffold_243-1510915933:360091..360238TCONS_00054623-exon-scaffold_243-1510915933:360091..360238Clytia hemisphaericaexon
TCONS_00054623-exon-scaffold_243-1510915933:359163..359400TCONS_00054623-exon-scaffold_243-1510915933:359163..359400Clytia hemisphaericaexon
TCONS_00054623-exon-scaffold_243-1510915933:357433..357850TCONS_00054623-exon-scaffold_243-1510915933:357433..357850Clytia hemisphaericaexon
TCONS_00054623-exon-scaffold_243-1491911889:360091..360238TCONS_00054623-exon-scaffold_243-1491911889:360091..360238Clytia hemisphaericaexon
TCONS_00054623-exon-scaffold_243-1491911889:359163..359400TCONS_00054623-exon-scaffold_243-1491911889:359163..359400Clytia hemisphaericaexon
TCONS_00054623-exon-scaffold_243-1491911889:357433..357850TCONS_00054623-exon-scaffold_243-1491911889:357433..357850Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:357433..360238 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
364.437	361.43	252.765	270.871	252.165	199.01	274.287	337.092	386.041	447.615	578.12	403.224	455.802	474.714	669.844	851.721	334.367	301.333	334.035	319.895	230.428	245.233	283.995	268.013	243.526	221.397	390.076	376.336	463.53	328.71
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR020904Sc_DH/Rdtase_CS
IPR016040NAD(P)-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016491 oxidoreductase activity
Blast
[Close]
BLAST of TCONS_00054623 vs. Swiss-Prot (Human)
Match: HCD2 (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Homo sapiens GN=HSD17B10 PE=1 SV=3)

HSP 1 Score: 244.202 bits (622), Expect = 2.399e-79
Identity = 122/191 (63.87%), Postives = 147/191 (76.96%), Query Frame = 2 
Query:    5 VKAGVHMAKEKFGELNALVNCAGIGIAVTTLD-KKGAAHPLDLFEKVINVNLVGSFNCIRILAEEMATNEPDVDGGRGVMINTASCAAFEGQRGQAAYSASKGGIVGMTIPIARDLAKHGIRVNTIAPGLFLTPLLESLPDKVQNALAKTVPFPQRLGHPDEFAQMAEQIIDNRMMNGSTVRLDGAIRMQP 574
            V+  + +AK KFG ++  VNCAGI +A  T + KKG  H L+ F++V++VNL+G+FN IR++A EM  NEPD  G RGV+INTAS AAFEGQ GQAAYSASKGGIVGMT+PIARDLA  GIRV TIAPGLF TPLL SLP+KV N LA  VPFP RLG P E+A + + II+N  +NG  +RLDGAIRMQP
Sbjct:   71 VQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQVPFPSRLGDPAEYAHLVQAIIENPFLNGEVIRLDGAIRMQP 261
The following BLAST results are available for this feature:
BLAST of TCONS_00054623 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HCD22.399e-7963.873-hydroxyacyl-CoA dehydrogenase type-2 OS=Homo sap... [more]
back to top