TCONS_00054620 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054620
Unique NameTCONS_00054620
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length677

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054620 ID=TCONS_00054620|Name=TCONS_00054620|organism=Clytia hemisphaerica|type=transcript|length=677bp
ATGTAGAAGAATTTATCAGTCCAAGCTGAAGTATCCACATTGACCAGTAC
TGTGGTGACAATGAAACAGATTGTCGAGAGGATCAACGTTGAAATGACAC
GACCGTTCCTCGAAACTCGATTTGTCAAACATAAATTGATAATCAATGCA
ATACCGCATGGAATTTGTGAGCAAATTGAAAAAGCACTTTCGAACAATTT
CAAATCACTTTCATTGTTTTTCAGTTTGCTTTTAAAGTACTGGTCAGCGT
TGATGAAGAAATTCCATGGTAGTAACATTCCAATACCGATCaggaaaaat
gataaataaccAAGGTTGTATCGATCCTCCTTGACAACGTAGGCATCATT
CGATTCTTGATAACTTCCAATGTCTTCATTGGATCCATAGTTCTTCTTGG
TGTGAGTGTCATTTCTCAATTTGGATCCTTCGTTCGTCACTGGAGGCATT
GTGATGTAATTTTCCCAGACTATAAAAATGAATGAGAAgtattgtttgtt
tttgtatgatttaTGTATGGGTCTTTAAAAGCTCATGCAACTTCATTTGG
CTAATAATCTTGCTCGAAAATCACCTGGAAATCATAGTCATGATTTATTT
AATTTAGTTTGTTAAATaattaaaagtagaatttcCTCAGTTATTTCCCC
CAACTAAAGTAATTATCTAGACCTCGT
Run BLAST on NCBI

transcript from alignment at scaffold_243:306914..312843-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054620 ID=TCONS_00054620|Name=TCONS_00054620|organism=Clytia hemisphaerica|type=transcript|length=5930bp|location=Sequence derived from alignment at scaffold_243:306914..312843- (Clytia hemisphaerica)
ATGTAGAAGAATTTATCAGTCCAAGCTGAAGTATCCACATTGACCAGCAC
TGTGGTGACAATGAAACAGATGGTCGAGATGATCAACGTTGAAATGACAC
GACCGTTTCTCGAAACTCGATTTGTCAAACATAAATTGATAATCAGTGCA
ATACCGCATGGTATTTGTGAGCAAATTGAAAAAGCACTTTCGAACAATTT
CAAATCACTTTCATTGTTTTTCAGTTTGCTTTTAAAGTACTGGTCAGCGT
TGATGAAGAAATTCCATGGTAGTAACATTCCAATACCGATCAGGAAAAAT
GATAAATAACCAANTGAAGAAATTCCATGGTAGCAACATTCCAATGCCGA
TTAAGAAAAAGGAGAAATAAATTTTCGGACGGTTTATTGTGTCCGAATAG
ATTTCCCCTTCATTTTCGTTTTGTGATTCTTCGGGTAGATTTATGTAATC
CACTTCCGTCATCATAATATTTACGATTTTTATTTATAAGAACAAACTAT
ATAAGAACATAAGGTATGTATATAAGTATTAGTATAACATATATCTTACA
CGTTTTTTTATAAGAACAAACTATATAAGAACATAAGGCTTCGATGGCCA
AAATGTTAAGAACAAATTAAGATCATTTTAAGGCTTCGCGGACTCAAAAA
CAGCATATTCTTAGGAAAATGGACAAAAATACATAACAAATGGGGAAAGT
AAGAATAATGTTGAAAATATTAATATGTTTTAGGCTTGAAATTTAAAAAG
TTAAGAAAATCTGAAGACTTCAAAATTTTTGGATGTTCCTTAAAAAAACG
ATGTATGATGTATGGTGTTTTGTTCCAGCAATTCAAAGTCACCAAAACCA
AATGAGACTATAATAAAGAGAAAATCTCAAAACTTATGTATACTTATTAC
AGTATTCCACAAAACTGCACGATTTGATTGCTATTGCAGGCCGTTTAAAA
TTGAAATCGAAAGCTGATAATATATTTCCAAAATCTATTTCATTTCAGTC
TTTTCCTCTCTACATTTGCTTGCCCGAGTTATAAATTCACTTCATTTATC
AGTTTTATATGAGACACTGTTTTTTGTTATAAGTTCATATGATCTATTAT
GGATATTATGTTTCGAAAAAATTTTCGGAGGTGTCACCTTCAAAATAATT
TGACGCGTGTTTTCTTTTGTCTAAATGATTATTCCAATCTCGTTGTTATG
TAATAAGCATTTAGGTCAAGCGTGTCTGTTTTATTTGATAATTGGTCTTT
GTATTTGTCGCTTTTTTAATTTTCAATTAAAGGACAATTATTTAATAATT
TGCCAACTCATTAGCAATCTTGAGTCTTTTACATGGTTTCAGCCCACTTT
TCAGGTGCCCCCATTGAGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCTTC
GAGTTCAAGCGGCACGACTCTGCTTGCTGTCACGGACAGTTCATTCACTA
GATTCAGCTTTTTCTTTTCCTTTTCCTTTTTTTGACCAATCTTGCTCCAC
ATCCGTGTCAATTCAATGGGAAAAGCTTGTAAATTAAAATTGGCGAGTAA
ACAAACGAAATCACTCTTATTTTAAAAACAAAACCTTTAAAGGTTTTATT
TTTACATACAGTAAGTGTTTTCGTTTCATATCAGACACATATTTTATATC
AGGACAGTGTCTGCCTATTGTTATATTATGCTGATATGAGCAAAAACATG
TTTTTCTTTTCCTCTTTCGGACTTATCTTGCTCCACATCTGTGTCAATTA
AACGGGAAAAAGCTTATAAATTAAAATTGACGATTAAGCAAATGAGATCG
ACTTTATAAATATAAGTGCTACTGGTATTATATGATGTCAAAAGTGATAG
ATAATTCCTAGCTGGGACGCCCATTTGAAACCCTCAAAAATGTACTTAGA
AATAGGAAGGGGTTAAAAAGGGGCTTAAAATCAATATTTTCACACTAATT
TCTACAATCAACATTACGGAATTAAGTCCGAAAATGTTCATTCTAACACC
ATCGAATTCTTGATATTCATGACGTAACCTTTTATACGGGAACACCCGAA
AAACACTGGGCGTTTGCCACCAATTTTGAATTCAAACAATAATACTTGTG
GCAAACGCCCGTGTTTTTCGTGTGTTTCCGTATAAAAGATTACGTCATGA
ATATCAAGAATTTATAAAGTGCACTAATTTTTGTAATCATCTATTGCCAT
CATTCAGGAAATAGAAATATGATCTTTCAACAGTTGAGTTTGTAAAGCAA
AAGTTTGTACACGATGAAGTCTAAAATAATCTCAATCGCTAACATTTCTT
TTAATTTAATTTTTATTGTCTTTTTTCGTAGATTTTCTTTTAAAATTTAC
ATAAAACACACTTAACATATACAAAATTTGCAAAAAAATTATATTTACAA
AGAATCAAGTCAATCCCTAATGTGGTGTCATACATTTCAATTAATTACGT
AACAAAAATAATATGCCTTTTTAATAAACAAAAAAACAATATTAGTATTA
CATATATCTTACACGCTTTTTATATAAGAACGTAAGGCTTCGCTGACCAA
AATATTAAAAACAAGTTAAGAACATTTAAGGCTTTATGGACTCAAAAACA
CCCTATTTCTCAGGTCAAAATTATTACAAAATAGTCAAAATAAGAACATG
TTAAGAACATTTTTAGGCTTAGAACTCAAAAAGTTAAGAGCATTCAAAAT
CTTCAAAATCTTTTGATGCTCTTATAAAAAACGTGTACTGAAAGACTCAA
ATATCATAACGCCTATCATTAGATTGTATCTACAATAGCTAAGGATAAAA
CTGATCCTAAACCAAGTCCGATTGTCAAAAATAATTGCATGGTTGCACCT
GCTGTCTCCATCATCCCTTCAGGTGCACGCTCCGGACCGTACATCATACA
AAGACTAGCGAGATAGCCATTACTGACGGAGAAAAGGATATTAAAGATGA
CAGGATAGATATCTTTATTGAAGACAACTGTTAAGTGATGACGTGGTTGG
AAATTACAGAACATGAACAGTGGGATGAATGCAATTCGAGCAACACAGAG
GATTGGTAACCAGGGTCCTTTCTTATCAACTATTCGAACGAAACCAGAGA
TGATTCGACCAACAAAATCACCAACGTTGAAAATCAAGAATCCAACAACA
GCCGTGAAATATTTATTAGTGAATGCGGATCCATTGCTTTCATTGACTGA
TCGAATACCGGATAAAATGGCGGGTTGGATAGTCAAGGTGACGGCGAAAA
CACACATGACGGATAGTGCTGTCGGATAGATGTTACGAATGACGGCACAA
AAGCTTTGTTCACCGGTACAATCGTTTTCTCCACTGCTGGTTGATGGAGT
ACTGGACATTTTATCATCATAAAGTTTGATTTCAAATTTATCTTTCAACA
CTGGTAATCGAAACATACCAATGTAGACAAAGATGCAAGCGAACAAAACC
AGAGAAGCGATACTGAAATAGATTGTTGAATCTAATTTGATATCATCACC
AACAGCTAAGGAGATGATATTGGTGATAGAGGCGAAGGTTCCAGCACAGC
TCATACCGACAACTGCNGAGCATTCAAAATCTTCAAAATCTTTTGATGCT
CTTATAAAAAACGTGTACTGAAAGACTCAAATATCATAACGCCTATCATT
AGATTGTATCTACAATAGCTAAGGATAAAACTGATCCTAAACCAAGTCCG
ATTGTCAAAAATAATTGCATGGTTGCACCTGCTGTCTCCATCATCCCTTC
AGGTGCACGCTCCGGACCGTACATCATACAAAGACTAGCGAGATAGCCAT
TACTGACGGAGAAAAGGATATTAAAGATGACAGGATAGATATCTTTATTG
AAGACAACTGTTAAGTGATGACGTGGTTGGAAATTACAGAACATGAACAG
TGGGATGAATGCAATTCGAGCAACACAGAGGATTGGTAACCAGGGTCCTT
TCTTATCAACTATTCGAACGAAACCAGAGATGATTCGACCAACAAAATCA
CCAACGTTGAAAATCAAGAATCCAACAACAGCCGTGAAATATTTATTAGT
GAATGCGGATCCATTGCTTTCATTGACTGATCGAATACCGGATAAAATGG
CGGGTTGGATAGTCAAGGTGACGGCGAAAACACACATGACGGATAGTGCT
GTCGGATAGATGTTACGAATGACGGCACAAAAGCTTTGTTCACCGGTACA
ATCGTTTTCTCCACTGCTGGTTGATGNGCTGAAGTATCCACATTGACCAG
TACTGTGGTGACAATGAAACAGATTGTCGAGAGGATCAACGTTGAAATGA
CACGACCGTTCCTCGAAACTCGATTTGTCAAACATAAATTGATAATCAAT
GCAATACCGCATGGAATTTGTGAGCAAATTGAAAAAGCACTTTCGAACAA
TTTCAAATCACTTTCATTGTTTTTCAGTTTGCTTTTAAAGTACTGGTCAG
CGTTGATGAAGAAATTCCATGGTAGTAACATTCCAATACCGATCAGGAAA
AATGATAAATAACCAAGGTTGTATCGATCCTCCTTGACAACGTAGGCATC
ATTCGATTCTTGATAACTTCCAATGTCTTCATTGGATCCATAGTTCTTCT
TGGTGTGAGTGTCATTTCTCAATTTGGATCCTTCGTTCGTCACTGGAGGC
ATTGTGATGTAATTTTCCCAGACTATAAAAATGAATGAGAAGTATTGTTT
GTTTTTGTATGATTTATGTATGGGTCTTTAAAAGCTCATGCAACTTCATT
TGGCTAATAATCTTGCTCGAAAATCACCTGGAAATCATAGTCATGATTTA
TTTAATTTAGTTTGTTAAATAATTAAAAGTAGAATTTCCTCAGTTATTTC
CCCCAACTAAAGTAATTATCTAGACCTCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034415XLOC_034415Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054620-exon-scaffold_243-1575043694:312806..312843TCONS_00054620-exon-scaffold_243-1575043694:312806..312843Clytia hemisphaericaexon
TCONS_00054620-exon-scaffold_243-1575043694:306914..307552TCONS_00054620-exon-scaffold_243-1575043694:306914..307552Clytia hemisphaericaexon
TCONS_00054620-exon-scaffold_243-1510915933:312806..312843TCONS_00054620-exon-scaffold_243-1510915933:312806..312843Clytia hemisphaericaexon
TCONS_00054620-exon-scaffold_243-1510915933:306914..307552TCONS_00054620-exon-scaffold_243-1510915933:306914..307552Clytia hemisphaericaexon
TCONS_00054620-exon-scaffold_243-1491911889:312806..312843TCONS_00054620-exon-scaffold_243-1491911889:312806..312843Clytia hemisphaericaexon
TCONS_00054620-exon-scaffold_243-1491911889:306914..307552TCONS_00054620-exon-scaffold_243-1491911889:306914..307552Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:306914..312843 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.111826	0.457711	0	0.0373475	8.13701	5.85858	0.893215	1.53557	0.14135	0.373501	0	0	0.66529	0.402517	0.309854	0	0	0.845849	0	0	0.227936	0.637976	0	0	0	0.107493	0	0.0752151	0.686412	0
Blast
[Close]
BLAST of TCONS_00054620 vs. Swiss-Prot (Human)
Match: S29A3 (Equilibrative nucleoside transporter 3 OS=Homo sapiens GN=SLC29A3 PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 7.151e-23
Identity = 51/120 (42.50%), Postives = 71/120 (59.17%), Query Frame = -1 
Query:    6 KEDRYNLGYLSFFLIGIGMLLPWNFFINADQYFKSKLKNNESD-----------LKLFESAFSICSQIPCGIALIINLCLTNRVSRNGRVISTLILSTICFIVTTVLVNVDTSAWTDKFF 332
             EDR+   Y+ FF +GIG LLPWNFFI A +Y+  KL+N+ S            L  FES  ++ S +P  + L+ N  L NRV+ + RV+++L +    F+V T LV VDTS+WT  FF
Sbjct:   46 PEDRFCGTYIIFFSLGIGSLLPWNFFITAKEYWMFKLRNSSSPATGEDPEGSDILNYFESYLAVASTVPSMLCLVANFLLVNRVAVHIRVLASLTVILAIFMVITALVKVDTSSWTRGFF 165
The following BLAST results are available for this feature:
BLAST of TCONS_00054620 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S29A37.151e-2342.50Equilibrative nucleoside transporter 3 OS=Homo sap... [more]
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