TCONS_00054604 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054604
Unique NameTCONS_00054604
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length761

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054604 ID=TCONS_00054604|Name=TCONS_00054604|organism=Clytia hemisphaerica|type=transcript|length=761bp
CAGCAAATTGTATACAAGCCACAGTCATGTGAATTTTTATACTCTTAAAA
TACCAATGTAAACACAATAAAGGAGGGACTTTTCGTGTTCGGCTGGTTTT
TTTTTAGAACTTGTTCTAGAATATTCTATCATGAAACATTATAAAAAAAG
CTAGTTGGAACGTATTTGCTTGAGTACTTTGCAATAAGAGAGGTGCAGAG
ATTTTCAAGTTTAGATTTGGTTTCATAAAATATTGAGGTTTTGGTAAGTT
ATTATCTAAAAGTTACAAGGAGCACAAAGATGTCGACCGTAAACTCTAAA
AAGACAAAATATCAAGGTTCCAAGCGTATGTTTGGACAATTTAGATGTCC
CAAATGTAATAGGACATGGGCTAGTGGAAATACATGGGCTAATACCGCAC
AACAATGTCAAAGCTGTTTAATTGACGTTTTTCCATACCATCAACAAAGA
TTAGAAAGACCATCTGTCCTCACAGGCCCAGGAAAAGAACATCCTCAACA
TTTATGGGGAATGTGTAAGAGATTGGGACGATATTGCCGTGATCAAGATG
ATTATAAAGATTTAACAAACTATTTTGGAGGTCTGCGAATTTAAGGAGCT
GATTGGTCAAGAACGAAATGGCCAGGGCTTCGTTGTTATCGATTGCTAAA
GACATCAGTAACCTATTCTttgttgtaaaatttgtaattttgttttgaaa
tttgtataTTTAATTAATTTGGTAATCGTGCTGTGTAAATAAAACGGAAA
AAAGAATCTCA
Run BLAST on NCBI

protein sequence of TCONS_00054604-protein

>TCONS_00054604-protein ID=TCONS_00054604-protein|Name=TCONS_00054604-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MSTVNSKKTKYQGSKRMFGQFRCPKCNRTWASGNTWANTAQQCQSCLIDV
FPYHQQRLERPSVLTGPGKEHPQHLWGMCKRLGRYCRDQDDYKDLTNYFG
GLRI
Run BLAST on NCBI

transcript from alignment at scaffold_243:234595..236286-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054604 ID=TCONS_00054604|Name=TCONS_00054604|organism=Clytia hemisphaerica|type=transcript|length=1692bp|location=Sequence derived from alignment at scaffold_243:234595..236286- (Clytia hemisphaerica)
CAGCAAATTGTATACAAGCCACAGTCATGTGAATTTTTATACTCTTAAAA
TACCAATGTAAACACAATAAAGGAGGGACTTTTCGTGTTCGGCTGGTTTT
TTTTTAGAACTTGTTCTAGAATATTCTATCATGAAACATTATAAAAAAAG
CTAGTTGGAACGTATTTGCTTGAGTACTTTGCAATAAGAGAGGTGCAGAG
ATTTTCAAGTTTAGATTTGGTTTCATAAAATATTGAGGTTTTGGTAAGTT
ATTATCTAAAAGTTACAAGGAGCACAAAGATGTCGACCGTAAACTCTAAA
AAGGTATTTTTCATTTGCTTTTCTCCTTAAGCTCAATTATTTTCTGCTAT
GTACAACGCTCTCCACAAAATTTGGCTTAAAGTACATCCTCGTTATCAAA
CCCCATGGCGATTTAATAAGAATACACCCCTGCTTCTTATATTGTATTTG
AATTTTTTTTCTCCAAAAATCATTTCTCGAACTTTGACGTTTTCAATTTT
AATTTTTTCACTTTATCATCACTTTTTTTCTTTCATGCTCCGATGTCTGA
GTTTAGAATTCAAGAAACTTAAACCCAAAATTATTAGTTTGTAAAATCCC
ATCGGTAGTTTACAATTTATCTTTTACTTCCTTTTGTTATGTGTTTTAGA
CAAAATATCAAGGTTCCAAGCGTATGTTTGGACAATTTAGATGTCCCAAA
TGTAATAGGACATGGGCTAGTGGAAATACATGGGCTAATACCGCACAACA
ATGTCAAAGCTGTTTAATTGACGTTTTTCCATACCATCAACAAAGATTAG
AAAGACCATCTGTCCTCACAGGCCCAGGAAAAGAACATCCTCAACATTTA
TGGGGAATGTGTAAGAGATTGGGACGATATTGCCGTGATCAAGATGATTA
TAAAGATTTAACAAACTATTTTGGAGGTCTGCGAATTTAAGGTAACTTGT
TCATACTTACACCCCTGTGTTACAGATCCACTAGGACCCCAGCCCCACTA
GAAAATATGGCAAAAAGTTCGTCCCCGGTGGGAAAAATACCCTAGAATTT
CGGCCCCACTGGAAAATATTGATTTCACCCCATTTGAAATTCAATGTTTA
AAAATTGCACTACGAAACCATCCCCACTGGATTTTTTAATCTTGGAACAA
TAGAATTTTTATACCCATCATTGAGATTTCAATAGAAGTTTTTATCCCCG
CTGTGGGAAAAAGTTTCACTGGGGCTGTGAGACAGGTGTGTATACTTTAA
ATTAATTCTGCAATTATGCATTTTCTTTCTAGGTTATCCAGTTGTTGAAT
CTTGCTGACTCGAACTTCTATTATTCGAATCTTTCTATAATTCGAAATAA
AAAAGAAATAATTCTCAGCTCCCGTCATAGAAAAAAACTTGCTTATCATT
ATACGAATCTTTCTGTATGTAATTCGAACAAATTAGAATTCCCGTTCGAA
CTCGAATCAAGCTCGAATTAGCGAGAGTCATCTATACGTCAGCTTTAATT
TACTTTTTAATAATTCAACTTTATAGGAGCTGATTGGTCAAGAACGAAAT
GGCCAGGGCTTCGTTGTTATCGATTGCTAAAGACATCAGTAACCTATTCT
TTGTTGTAAAATTTGTAATTTTGTTTTGAAATTTGTATATTTAATTAATT
TGGTAATCGTGCTGTGTAAATAAAACGGAAAAAAGAATCTCA

Coding sequence (CDS) from alignment at scaffold_243:234595..236286-

>TCONS_00054604 ID=TCONS_00054604|Name=TCONS_00054604|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_243:234595..236286- (Clytia hemisphaerica)
ACAAAATATCAAGGTTCCAAGCGTATGTTTGGACAATTTAGATGTCCCAA
ATGTAATAGGACATGGGCTAGTGGAAATACATGGGCTAATACCGCACAAC
AATGTCAAAGCTGTTTAATTGACGTTTTTCCATACCATCAACAAAGATTA
GAAAGACCATCTGTCCTCACAGGCCCAGGAAAAGAACATCCTCAACATTT
ATGGGGAATGTGTAAGAGATTGGGACGATATTGCCGTGATCAAGATGATT
ATAAAGATTTAACAAACTATTTTGGAGGTCTGCGAATTTAAATGTCGACC
GTAAACTCTAAAAAGACAAAATATCAAGGTTCCAAGCGTATGTTTGGACA
ATTTAGATGTCCCAAATGTAATAGGACATGGGCTAGTGGAAATACATGGG
CTAATACCGCACAACAATGTCAAAGCTGTTTAATTGACGTTTTTCCATAC
CATCAACAAAGATTAGAAAGACCATCTGTCCTCACAGGCCCAGGAAAAGA
ACATCCTCAACATTTATGGGGAATGTGTAAGAGATTGGGACGATATTGCC
GTGATCAAGATGATTATAAAGATTTAACAAACTATTTTGGAGGTCTGCGA
ATTTAAATGTCGACCGTAAACTCTAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034411XLOC_034411Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054604-proteinTCONS_00054604-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054604-exon-scaffold_243-1575043694:235984..236286TCONS_00054604-exon-scaffold_243-1575043694:235984..236286Clytia hemisphaericaexon
TCONS_00054604-exon-scaffold_243-1575043694:235346..235637TCONS_00054604-exon-scaffold_243-1575043694:235346..235637Clytia hemisphaericaexon
TCONS_00054604-exon-scaffold_243-1575043694:234595..234760TCONS_00054604-exon-scaffold_243-1575043694:234595..234760Clytia hemisphaericaexon
TCONS_00054604-exon-scaffold_243-1510915933:235984..236286TCONS_00054604-exon-scaffold_243-1510915933:235984..236286Clytia hemisphaericaexon
TCONS_00054604-exon-scaffold_243-1510915933:235346..235637TCONS_00054604-exon-scaffold_243-1510915933:235346..235637Clytia hemisphaericaexon
TCONS_00054604-exon-scaffold_243-1510915933:234595..234760TCONS_00054604-exon-scaffold_243-1510915933:234595..234760Clytia hemisphaericaexon
TCONS_00054604-exon-scaffold_243-1491911889:235984..236286TCONS_00054604-exon-scaffold_243-1491911889:235984..236286Clytia hemisphaericaexon
TCONS_00054604-exon-scaffold_243-1491911889:235346..235637TCONS_00054604-exon-scaffold_243-1491911889:235346..235637Clytia hemisphaericaexon
TCONS_00054604-exon-scaffold_243-1491911889:234595..234760TCONS_00054604-exon-scaffold_243-1491911889:234595..234760Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:234595..236286 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.142391	0	0	0.413154	0.508353	2.31341	3.96766	2.56741	0.562571	6.32012	3.35468	11.3918	5.66215	7.29237	6.98698	21.3262	42.7533	2.04178	2.39018	7.50607	10.1261	9.97618	17.4023	33.3	57.789	12.1883	6.20897
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027377Znf-3CxxC
IPR033446Zcchc24_zf-3CxxC
Blast
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BLAST of TCONS_00054604 vs. Swiss-Prot (Human)
Match: ZCH24 (Zinc finger CCHC domain-containing protein 24 OS=Homo sapiens GN=ZCCHC24 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.962e-23
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:  304 TKYQGSKRMFGQFRCPKCNRTWASGNTWANTAQQCQSCLIDVFPYHQQRLERPSVL--TGPGKEHPQHLWGMCKRLGRYCR 540
            T YQG KR FG+++CPKC R W SGN+WAN  Q+C  C I+V+P+ Q+ LE+P  L  +   KEHPQHL   CK LG YCR
Sbjct:  158 TPYQGKKRCFGEYKCPKCKRKWMSGNSWANMGQECIKCHINVYPHKQRPLEKPDGLDVSDQSKEHPQHLCEKCKVLGYYCR 238
The following BLAST results are available for this feature:
BLAST of TCONS_00054604 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZCH241.962e-2355.56Zinc finger CCHC domain-containing protein 24 OS=H... [more]
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