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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054595 ID=TCONS_00054595|Name=TCONS_00054595|organism=Clytia hemisphaerica|type=transcript|length=2406bp
cccccccccctcaaattgATCAACATATGAAAAGGATGTCGGTCATGGAC
ATttggaaaaaaagtgaaacgttttaGGGCCCATTGGCGACAGACTAATT
ATCTAGAACAACAAAATTACAATAcatagaaaatttaaaataaataagat
attcatCATCatacaaaacagacaaaatattaAAGCTGTCAAATTCCTTC
AAATCCTTGCTTCAAAAATTACAGCCTCGAGTCGGTGAATTATTCAGGAG
TTTTGATGGAGTTTtcataagatactttaataattggtcataagagtaat
aaaaatgacgcgttctttagaaaaagtaacaaaattgttttattactgat
taacgaccaaccaaatcaaataggagcttgtaaaaactccatctcgtccc
gaaTTATTGACCAATTTGTTTTTGGCGCAGTCTGTACGAGTTTTAACGCT
TGTCGTCGTTTCCCGTCGTTAAGAACATTGTGACGTCAGTTTTAAAGAAA
ATGGACACTGACCACGATATCGCacattttttgtcttcaatcacgcaAAT
CAGCCAAAActagatttttcaaatcacgatcacagCGTTTTGACCTCTGA
ACACGCAATCATGCTAGAAAAAAGTCCTTATCACGACATCTCACAAACCG
CTTTCGGGACCTCTAAAAATGATTTATATCGGTTTCGACATAGTGAAGGA
AACTGATGATGGAAAATGCACTGGGAACTATTAAGCATGAAGAATCTCAG
GGAAAAACAGATTATTTCGCCAGAGAAACATCTAAGGTTattaaaattct
tttgaaaccaCGACCgatattttgatttcattttcttaTTGCTGAATACA
CAAACGTCACATAATCAAACacttaccgtattacttcgaataaacgctca
gggcgtttaaaagaagagggcgtttattaaattgtTTTAGTCTATagtcg
aatatttagagcaaataaatcttttgttttagttctttatcaggatttta
gtgcaaaatttctttggttcaacAACTAAAATTGCTtcgaaaactgctct
ggttacaagaaatgactaaattcttccttttcaaacccaatcaagactgg
tattgaagtattaaagtcacaagtttctaataaacgtcCCTCTCTTAAAG
GGGTGATTATTCgaaaggggcgtttatttcaagagggggggcgtttatta
aataatttttcttttaggaggggcgtttatttgaggggggcgTTTAAAGA
AGAGGGGcttttatttgaagtaatacgaTAAGTTCACCACAAAACTGTGC
ACATCTATTTGAGGAGGTTTCAAACCAGCAGAAGCTTCCAACAAACACGG
TTCTTTTCTTCTTATGGCGTAGTTATGACGTAACAGGCAAGGTCAAAACA
TTGTGTTTCAATAATGTATAGCAcatatggcgttctaaattaCAGGCCTG
GTAAACGCGAAATTAACCACGAAATTACGTTAGTTTCCAATTTCGGGCCT
GCATAAAAATGAGATAGCCGCGCGTTTACCAGGCCGgtaatttagaacgc
catgataGCAAAGGACCTATTTCGAAACATATATTGGACCAACGGAGAGG
GAGTTTATTTAGTTGGATCTCCAGTTCTACGACATGTCATTACGTCATTT
AGCATGGTAGCTAACTAACGCATGTCGTTGGCTTCTGAGAAACGCATTTA
TGCCACATCATAATCTTCTTAGCGACATATGATGGTTACACCATAATCTT
CTGAGAAACGCATTTCTGTCACATCATAATCTTCTAAGCGACATATGTTG
GTTAGACCATAATCTTCTGAGAAACGCATTTCTGTCACTCCATAATCTTC
TAAGCGACATACACATCACCTGTTATTGCTTGCATTACTCGAAAAGCTAG
CTAAGAAGCCTTTGGTTGCTCCGCTATTTGTTGTTGAGGAGATGCTAAGC
TGTGAGAAGCCGCTCGCGCTGGACGTAATGCTGGACATCGAACCTCTGTA
ATGAGAAAAAATATCAGTTCAAAACCCTGCTCCAAAAGGTCATTGTCGTT
CCTAACCTATCTTCCaaccaattcatgatatgcaccactgcaatgacttt
atgaaattatgcaacttttcagattttttttcacccaatacgtcactttt
tctattgtttaagtgacgtattgggtggaaaatttttaaaggttctcaga
agactctccagtggtgcatatcatgaatgatcaaaagttatggtttTTTG
TGATAGGATTGCCCTTCTTGGTTTTAAGTTGACACTGCACTGCCCGCAAG
GTTTGTGGACAACTGACTCTTTTTACTTGGTATCCACGTATGCTAAATTg
acgagtttatgtatttgcactttttagGACGGCGTAGTGActcaagcgat
ttggaa Run BLAST on NCBI transcript from alignment at scaffold_243:110787..113326- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054595 ID=TCONS_00054595|Name=TCONS_00054595|organism=Clytia hemisphaerica|type=transcript|length=2540bp|location=Sequence derived from alignment at scaffold_243:110787..113326- (Clytia hemisphaerica)
CCCCCCCCCCTCAAATTGATCAACATATGAAAAGGATGTCGGTCATGGAC
ATTTGGAAAAAAAGTGAAACGTTTTAGGGCCCATTGGCGACAGACTAATT
ATCTAGAACAACAAAATTACAATACATAGAAAATTTAAAATAAATAAGAT
ATTCATCATCATACAAAACAGACAAAATATTAAAGCTGTCAAATTCCTTC
AAATCCTTGCTTCAAAAATTACAGCCTCGAGTCGGTGAATTATTCAGGAG
TTTTGATGGAGTTTTCATAAGATACTTTAATAATTGGTCATAAGAGTAAT
AAAAATGACGCGTTCTTTAGAAAAAGTAACAAAATTGTTTTATTACTGAT
TAACGACCAACCAAATCAAATAGGAGCTTGTAAAAACTCCATCTCGTCCC
GAATTATTGACCAATTTGTTTTTGGCGCAGTCTGTACGAGTTTTAACGCT
TGTCGTCGTTTCCCGTCGTTAAGAACATTGTGACGTCAGTTTTAAAGAAA
ATGGACACTGACCACGATATCGCACATTTTTTGTCTTCAATCACGCAAAT
CAGCCAAAACTAGATTTTTCAAATCACGATCACAGCGTTTTGACCTCTGA
ACACGCAATCATGCTAGAAAAAAGTCCTTATCACGACATCTCACAAACCG
CTTTCGGGACCTCTAAAAATGATTTATATCGGTTTCGACATAGTGAAGGA
AACTGATGATGGAAAATGCACTGGGAACTATTAAGCATGAAGAATCTCAG
GGAAAAACAGATTATTTCGCCAGAGAAACATCTAAGGTTATTAAAATTCT
TTTGAAACCACGACCGATATTTTGATTTCATTTTCTTATTGCTGAATACA
CAAACGTCACATAATCAAACACTTACCGTATTACTTCGAATAAACGCTCA
GGGCGTTTAAAAGAAGAGGGCGTTTATTAAATTGTTTTAGTCTATAGTCG
AATATTTAGAGCAAATAAATCTTTTGTTTTAGTTCTTTATCAGGATTTTA
GTGCAAAATTTCTTTGGTTCAACAACTAAAATTGCTTCGAAAACTGCTCT
GGTTACAAGAAATGACTAAATTCTTCCTTTTCAAACCCAATCAAGACTGG
TATTGAAGTATTAAAGTCACAAGTTTCTAATAAACGTCCCTCTCTTAAAG
GGGTGATTATTCGAAAGGGGCGTTTATTTCAAGAGGGGGGGCGTTTATTA
AATAATTTTTCTTTTAGGAGGGGCGTTTATTTGAGGGGGGCGTTTAAAGA
AGAGGGGCTTTTATTTGAAGTAATACGATAAGTTCACCACAAAACTGTGC
ACATCTATTTGAGGAGGTTTCAAACCAGCAGAAGCTTCCAACAAACACGG
TTCTTTTCTTCTTATGGCGTAGTTATGACGTAACAGGCAAGGTCAAAACA
TTGTGTTTCAATAATGTATAGCACATATGGCGTTCTAAATTACAGGCCTG
GTAAACGCGAAATTAACCACGAAATTACGTTAGTTTCCAATTTCGGGCCT
GCATAAAAATGAGATAGCCGCGCGTTTACCAGGCCGGTAATTTAGAACGC
CATGATAGCAAAGGACCTATTTCGAAACATATATTGGACCAACGGAGAGG
GAGTTTATTTAGTTGGATCTCCAGTTCTACGACATGTCATTACGTCATTT
AGCATGGTAGCTAACTAACGCATGTCGTTGGCTTCTGAGAAACGCATTTA
TGCCACATCATAATCTTCTTAGCGACATATGATGGTTACACCATAATCTT
CTGAGAAACGCATTTCTGTCACATCATAATCTTCTAAGCGACATATGTTG
GTTAGACCATAATCTTCTGAGAAACGCATTTCTGTCACATCATAATCTTC
TTAGCGACATATGATGGTTACACTATAATCTTCTGAGAAACGCATTTATG
CCACTCCATAATCTTCTTTAAGCGACATATATTGGTTACACCATAATCTT
CTGAGAAACGCATTTCTGTCACTCCATAATCTTCTAAGCGACATACACAT
CACCTGTTATTGCTTGCATTACTCGAAAAGCTAGCTAAGAAGCCTTTGGT
TGCTCCGCTATTTGTTGTTGAGGAGATGCTAAGCTGTGAGAAGCCGCTCG
CGCTGGACGTAATGCTGGACATCGAACCTCTGTAATGAGAAAAAATATCA
GTTCAAAACCCTGCTCCAAAAGGTCATTGTCGTTCCTAACCTATCTTCCA
ACCAATTCATGATATGCACCACTGCAATGACTTTATGAAATTATGCAACT
TTTCAGATTTTTTTTCACCCAATACGTCACTTTTTCTATTGTTTAAGTGA
CGTATTGGGTGGAAAATTTTTAAAGGTTCTCAGAAGACTCTCCAGTGGTG
CATATCATGAATGATCAAAAGTTATGGTTTTTTGTGATAGGATTGCCCTT
CTTGGTTTTAAGTTGACACTGCACTGCCCGCAAGGTTTGTGGACAACTGA
CTCTTTTTACTTGGTATCCACGTATGCTAAATTGACGAGTTTATGTATTT
GCACTTTTTAGGACGGCGTAGTGACTCAAGCGATTTGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054595-exon-scaffold_243-1575043694:111489..113326 | TCONS_00054595-exon-scaffold_243-1575043694:111489..113326 | Clytia hemisphaerica | exon |
| TCONS_00054595-exon-scaffold_243-1575043694:110787..111354 | TCONS_00054595-exon-scaffold_243-1575043694:110787..111354 | Clytia hemisphaerica | exon |
| TCONS_00054595-exon-scaffold_243-1510915933:111489..113326 | TCONS_00054595-exon-scaffold_243-1510915933:111489..113326 | Clytia hemisphaerica | exon |
| TCONS_00054595-exon-scaffold_243-1510915933:110787..111354 | TCONS_00054595-exon-scaffold_243-1510915933:110787..111354 | Clytia hemisphaerica | exon |
| TCONS_00054595-exon-scaffold_243-1491911889:111489..113326 | TCONS_00054595-exon-scaffold_243-1491911889:111489..113326 | Clytia hemisphaerica | exon |
| TCONS_00054595-exon-scaffold_243-1491911889:110787..111354 | TCONS_00054595-exon-scaffold_243-1491911889:110787..111354 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:110787..113326 - |
Blast
The following BLAST results are available for this feature:
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