TCONS_00054594 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054594
Unique NameTCONS_00054594
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2001

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054594 ID=TCONS_00054594|Name=TCONS_00054594|organism=Clytia hemisphaerica|type=transcript|length=2001bp
cccccccccctcaaattgATCAACATATGAAAAGGATGTCGGTCATGGAC
ATttggaaaaaaagtgaaacgttttaGGGCCCATTGGCGACAGACTAATT
ATCTAGAACAACAAAATTACAATAcatagaaaatttaaaataaataagat
attcatCATCatacaaaacagacaaaatattaAAGCTGTCAAATTCCTTC
AAATCCTTGCTTCAAAAATTACAGCCTCGAGTCGGTGAATTATTCAGGAG
TTTTGATGGAGTTTtcataagatactttaataattggtcataagagtaat
aaaaatgacgcgttctttagaaaaagtaacaaaattgttttattactgat
taacgaccaaccaaatcaaataggagcttgtaaaaactccatctcgtccc
gaaTTATTGACCAATTTGTTTTTGGCGCAGTCTGTACGAGTTTTAACGCT
TGTCGTCGTTTCCCGTCGTTAAGAACATTGTGACGTCAGTTTTAAAGAAA
ATGGACACTGACCACGATATCGCacattttttgtcttcaatcacgcaAAT
CAGCCAAAActagatttttcaaatcacgatcacagCGTTTTGACCTCTGA
ACACGCAATCATGCTAGAAAAAAGTCCTTATCACGACATCTCACAAACCG
CTTTCGGGACCTCTAAAAATGATTTATATCGGTTTCGACATAGTGAAGGA
AACTGATGATGGAAAATGCACTGGGAACTATTAAGCATGAAGAATCTCAG
GGAAAAACAGATTATTTCGCCAGAGAAACATCTAAGGTTattaaaattct
tttgaaaccaCGACCgatattttgatttcattttcttaTTGCTGAATACA
CAAACGTCACATAATCAAACacttaccTTCACCACAAAACTGTGCACATC
TATTTGAGGAGGTTTCAAACCAGCAGAAGCTTCCAACAAACACGGTTCTT
TTCTTCTTATGGCGTAGTTATGACGTAACAGGCAAGGTCAAAACATTGTG
TTTCAATAATGTATAGCAcatatggcgttctaaattaCAGGCCTGGTAAA
CGCGAAATTAACCACGAAATTACGTTAGTTTCCAATTTCGGGCCTGCATA
AAAATGAGATAGCCGCGCGTTTACCAGGCCGgtaatttagaacgccatga
taGCAAAGGACCTATTTCGAAACATATATTGGACCAACGGAGAGGGAGTT
TATTTAGTTGGATCTCCAGTTCTACGACATGTCATTACGTCATTTAGCAT
GGTAGCTAACTAACGCATGTCGTTGGCTTCTGAGAAACGCATTTATGCCA
CATCATAATCTTCTTAGCGACATATGATGGTTACACCATAATCTTCTGAG
AAACGCATTTCTGTCACATCATAATCTTCTAAGCGACATATGTTGGTTAG
ACCATAATCTTCTGAGAAACGCATTTCTGTCACTCCATAATCTTCTAAGC
GACATACACATCACCTGTTATTGCTTGCATTACTCGAAAAGCTAGCTAAG
AAGCCTTTGGTTGCTCCGCTATTTGTTGTTGAGGAGATGCTAAGCTGTGA
GAAGCCGCTCGCGCTGGACGTAATGCTGGACATCGAACCTCTGTAATGAG
AAAAAATATCAGTTCAAAACCCTGCTCCAAAAGGTCATTGTCGTTCCTAA
CCTATCTTCCaaccaattcatgatatgcaccactgcaatgactttatgaa
attatgcaacttttcagattttttttcacccaatacgtcactttttctat
tgtttaagtgacgtattgggtggaaaatttttaaaggttctcagaagact
ctccagtggtgcatatcatgaatgatcaaaagttatggtttTTTGTGATA
GGATTGCCCTTCTTGGTTTTAAGTTGACACTGCACTGCCCGCAAGGTTTG
TGGACAACTGACTCTTTTTACTTGGTATCCACGTATGCTAAATTgacgag
tttatgtatttgcactttttagGACGGCGTAGTGActcaagcgatttgga
a
Run BLAST on NCBI

transcript from alignment at scaffold_243:110787..113326-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054594 ID=TCONS_00054594|Name=TCONS_00054594|organism=Clytia hemisphaerica|type=transcript|length=2540bp|location=Sequence derived from alignment at scaffold_243:110787..113326- (Clytia hemisphaerica)
CCCCCCCCCCTCAAATTGATCAACATATGAAAAGGATGTCGGTCATGGAC
ATTTGGAAAAAAAGTGAAACGTTTTAGGGCCCATTGGCGACAGACTAATT
ATCTAGAACAACAAAATTACAATACATAGAAAATTTAAAATAAATAAGAT
ATTCATCATCATACAAAACAGACAAAATATTAAAGCTGTCAAATTCCTTC
AAATCCTTGCTTCAAAAATTACAGCCTCGAGTCGGTGAATTATTCAGGAG
TTTTGATGGAGTTTTCATAAGATACTTTAATAATTGGTCATAAGAGTAAT
AAAAATGACGCGTTCTTTAGAAAAAGTAACAAAATTGTTTTATTACTGAT
TAACGACCAACCAAATCAAATAGGAGCTTGTAAAAACTCCATCTCGTCCC
GAATTATTGACCAATTTGTTTTTGGCGCAGTCTGTACGAGTTTTAACGCT
TGTCGTCGTTTCCCGTCGTTAAGAACATTGTGACGTCAGTTTTAAAGAAA
ATGGACACTGACCACGATATCGCACATTTTTTGTCTTCAATCACGCAAAT
CAGCCAAAACTAGATTTTTCAAATCACGATCACAGCGTTTTGACCTCTGA
ACACGCAATCATGCTAGAAAAAAGTCCTTATCACGACATCTCACAAACCG
CTTTCGGGACCTCTAAAAATGATTTATATCGGTTTCGACATAGTGAAGGA
AACTGATGATGGAAAATGCACTGGGAACTATTAAGCATGAAGAATCTCAG
GGAAAAACAGATTATTTCGCCAGAGAAACATCTAAGGTTATTAAAATTCT
TTTGAAACCACGACCGATATTTTGATTTCATTTTCTTATTGCTGAATACA
CAAACGTCACATAATCAAACACTTACCGTATTACTTCGAATAAACGCTCA
GGGCGTTTAAAAGAAGAGGGCGTTTATTAAATTGTTTTAGTCTATAGTCG
AATATTTAGAGCAAATAAATCTTTTGTTTTAGTTCTTTATCAGGATTTTA
GTGCAAAATTTCTTTGGTTCAACAACTAAAATTGCTTCGAAAACTGCTCT
GGTTACAAGAAATGACTAAATTCTTCCTTTTCAAACCCAATCAAGACTGG
TATTGAAGTATTAAAGTCACAAGTTTCTAATAAACGTCCCTCTCTTAAAG
GGGTGATTATTCGAAAGGGGCGTTTATTTCAAGAGGGGGGGCGTTTATTA
AATAATTTTTCTTTTAGGAGGGGCGTTTATTTGAGGGGGGCGTTTAAAGA
AGAGGGGCTTTTATTTGAAGTAATACGATAAGTTCACCACAAAACTGTGC
ACATCTATTTGAGGAGGTTTCAAACCAGCAGAAGCTTCCAACAAACACGG
TTCTTTTCTTCTTATGGCGTAGTTATGACGTAACAGGCAAGGTCAAAACA
TTGTGTTTCAATAATGTATAGCACATATGGCGTTCTAAATTACAGGCCTG
GTAAACGCGAAATTAACCACGAAATTACGTTAGTTTCCAATTTCGGGCCT
GCATAAAAATGAGATAGCCGCGCGTTTACCAGGCCGGTAATTTAGAACGC
CATGATAGCAAAGGACCTATTTCGAAACATATATTGGACCAACGGAGAGG
GAGTTTATTTAGTTGGATCTCCAGTTCTACGACATGTCATTACGTCATTT
AGCATGGTAGCTAACTAACGCATGTCGTTGGCTTCTGAGAAACGCATTTA
TGCCACATCATAATCTTCTTAGCGACATATGATGGTTACACCATAATCTT
CTGAGAAACGCATTTCTGTCACATCATAATCTTCTAAGCGACATATGTTG
GTTAGACCATAATCTTCTGAGAAACGCATTTCTGTCACATCATAATCTTC
TTAGCGACATATGATGGTTACACTATAATCTTCTGAGAAACGCATTTATG
CCACTCCATAATCTTCTTTAAGCGACATATATTGGTTACACCATAATCTT
CTGAGAAACGCATTTCTGTCACTCCATAATCTTCTAAGCGACATACACAT
CACCTGTTATTGCTTGCATTACTCGAAAAGCTAGCTAAGAAGCCTTTGGT
TGCTCCGCTATTTGTTGTTGAGGAGATGCTAAGCTGTGAGAAGCCGCTCG
CGCTGGACGTAATGCTGGACATCGAACCTCTGTAATGAGAAAAAATATCA
GTTCAAAACCCTGCTCCAAAAGGTCATTGTCGTTCCTAACCTATCTTCCA
ACCAATTCATGATATGCACCACTGCAATGACTTTATGAAATTATGCAACT
TTTCAGATTTTTTTTCACCCAATACGTCACTTTTTCTATTGTTTAAGTGA
CGTATTGGGTGGAAAATTTTTAAAGGTTCTCAGAAGACTCTCCAGTGGTG
CATATCATGAATGATCAAAAGTTATGGTTTTTTGTGATAGGATTGCCCTT
CTTGGTTTTAAGTTGACACTGCACTGCCCGCAAGGTTTGTGGACAACTGA
CTCTTTTTACTTGGTATCCACGTATGCTAAATTGACGAGTTTATGTATTT
GCACTTTTTAGGACGGCGTAGTGACTCAAGCGATTTGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034406XLOC_034406Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054594-exon-scaffold_243-1575043694:112450..113326TCONS_00054594-exon-scaffold_243-1575043694:112450..113326Clytia hemisphaericaexon
TCONS_00054594-exon-scaffold_243-1575043694:111489..112044TCONS_00054594-exon-scaffold_243-1575043694:111489..112044Clytia hemisphaericaexon
TCONS_00054594-exon-scaffold_243-1575043694:110787..111354TCONS_00054594-exon-scaffold_243-1575043694:110787..111354Clytia hemisphaericaexon
TCONS_00054594-exon-scaffold_243-1510915933:112450..113326TCONS_00054594-exon-scaffold_243-1510915933:112450..113326Clytia hemisphaericaexon
TCONS_00054594-exon-scaffold_243-1510915933:111489..112044TCONS_00054594-exon-scaffold_243-1510915933:111489..112044Clytia hemisphaericaexon
TCONS_00054594-exon-scaffold_243-1510915933:110787..111354TCONS_00054594-exon-scaffold_243-1510915933:110787..111354Clytia hemisphaericaexon
TCONS_00054594-exon-scaffold_243-1491911889:112450..113326TCONS_00054594-exon-scaffold_243-1491911889:112450..113326Clytia hemisphaericaexon
TCONS_00054594-exon-scaffold_243-1491911889:111489..112044TCONS_00054594-exon-scaffold_243-1491911889:111489..112044Clytia hemisphaericaexon
TCONS_00054594-exon-scaffold_243-1491911889:110787..111354TCONS_00054594-exon-scaffold_243-1491911889:110787..111354Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:110787..113326 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.460521	0.483356	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054594 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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