TCONS_00054586 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054586
Unique NameTCONS_00054586
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1324

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054586 ID=TCONS_00054586|Name=TCONS_00054586|organism=Clytia hemisphaerica|type=transcript|length=1324bp
gttctgaatgattgtttaatggtcacgtcacgtagatatcaattataaat
gtgttaaatgcataaccaggtaggtccataaaagtatcacttgttcataT
TTAGAAACACGCTACCCTTCTCGAGCTCGACTTAAGTTTCAATGACGTAG
ACGATTCACTTTGTGGGTTGATTTCTGAAATCATCTCTAGAAACTACAAA
CTACAAAAGATGGTCTTATGGAACAGCTGTTTGACCGAAGAACCTGCAAA
AAAATTGTATGAAGTTTTGAAAGACAGACCGAAACACTTCTCGTACCTTC
ATATAGATTTGCATGGCTCCAATTTCGTTTCAAATGAAACTATCATGCTC
TTTGAGAATGAGCTCAAAATTAAGACCTCCACAAATGAAGGAACAGACGA
GACGATTGTAGATCCTAAACAAACACAAGCAACTATCAACGATCAACCAT
CCAAAGAAATTGATGATTTTCTCGACATTGGAAGCCACCAACCTAATGCC
GAAGAAAATACTTTTACGCTGAAAGAAATGTTGGTTGACGTCATGCTTAC
TcagcaaattattttgaaaagacAAGTTTTGCAATATCAAAAGCAAATGG
AACATTATCAATTGTCTATCAATATGGTTCAGattcgaACGCCAAGGACA
TTTTGCATTTTACCGTCGCCGGAAGATAAATCATGGAAAAAGATTTCTTC
ATGGGGTAAAGAAACTTTTCGATTGCATTTGTTGTGTGAAGGTTCCAAAG
GAGGTTCTGTTGGAGATATTCATTTCATTCAAGACCATGAAGGATATCTT
ATTGAGCAGCCTTCcatgtttttaaagaaagttttaCCTCTATTGTCGAT
TGGGATGAAAGTCTTGTCAACGGCTGCAAAGATTGCTGGAACAGTGATTG
GAGCTGGTGGTTTGGTCCCCAATGCGGATGTCTTGAAGACTTTGGGGATT
GTTTCGAAAAAATCTGGTGATATTGCTTCTCTTCTACAACAGgtGCAAGA
TAGCATTAGAGAGTGCAATTCTCAAGTTGTCGAGAATCCTGAAATTCAGT
CTATCATTTGGGCAAAAAGTATGATGGTGAAAGCAGGTACTCGTGTTGAA
AGAACCCATAAACCTTTCGAAGGTAGAAGGCAGATACGGAGGCGAGCAAA
CGTAAAAACTACAAAGTTCTTTCACTTTCCTAAGAGAAAATGTTGAACAG
GATAAACTATGTGTCTATGAACAAGGCCGATCTAGGTTAGATGTTTTAAT
AAAGCCATATCTACATCAAAGGGATAAATCTTCGCGGGCAAACATTTTTG
CGagacagtttgaaaattttgcgc
Run BLAST on NCBI

protein sequence of TCONS_00054586-protein

>TCONS_00054586-protein ID=TCONS_00054586-protein|Name=TCONS_00054586-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
MVLWNSCLTEEPAKKLYEVLKDRPKHFSYLHIDLHGSNFVSNETIMLFEN
ELKIKTSTNEGTDETIVDPKQTQATINDQPSKEIDDFLDIGSHQPNAEEN
TFTLKEMLVDVMLTQQIILKRQVLQYQKQMEHYQLSINMVQIRTPRTFCI
LPSPEDKSWKKISSWGKETFRLHLLCEGSKGGSVGDIHFIQDHEGYLIEQ
PSMFLKKVLPLLSIGMKVLSTAAKIAGTVIGAGGLVPNADVLKTLGIVSK
KSGDIASLLQQVQDSIRECNSQVVENPEIQSIIWAKSMMVKAGTRVERTH
KPFEGRRQIRRRANVKTTKFFHFPKRKC
Run BLAST on NCBI

transcript from alignment at scaffold_243:935024..949831+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054586 ID=TCONS_00054586|Name=TCONS_00054586|organism=Clytia hemisphaerica|type=transcript|length=14808bp|location=Sequence derived from alignment at scaffold_243:935024..949831+ (Clytia hemisphaerica)
gttctgaatgattgtttaatggtcacgtcacgtagatatcaattataaat
gtgttaaatgcataaccaggtaggtccataaaagtatcacttgttcataT
TTAGAAACACGCTACCCTTCTCGAGCTCGACTTAAGTTTCAATGACGTAG
ACGATTCACTTTGTGGGTTGATTTCTGAAATCATCTCTAGAAACTACAAA
CTACAAAAGATGGTCTTATGGAACAGCTGTTTGACCGAAGAACCTGCAAA
AAAATTGTATGAAGTTTTGAAAGACAGACCGAAACACTTCTCGTACCTTC
ATATAGATTTGCATGGCTCCAATTTCGTTTCAAATGAAACTATCATGCTC
TTTGAGAATGAGCTCAAAATTAAGGTATTGAATTGTATTAAATAAAACAT
GAggatttttatttgataaaaatttttagTCTCAGTTTTACCGGAAAGTT
AGGTTAGTTCCACGAAAATTGTTTGCCAAAATCTCTTTTTCACTCCTTTC
TCTTGGCCGATTCACCTCTGTCTTGTTTCTTCATTTACGCAAGATTTGCA
GACCTCCCggggaaatcccacttgttcgacgGTACGTTTGTTCAACAAAT
TTGTAAAGATGTCGAACTGATGCATTGTCGAACAACTGTGTGTGACATAT
CACCGACCTCCCTGTGTTGATACTCCTTGTCAAAGCCTTAGGATCTCGTT
AGTAAGATATAAGTATACCAATTNTGATACTCCTGATACTCTTGATACTC
CTTGTCAAAGCCTTAGGATCTCGTTAGTAAGATATAAGTATACCAATTAT
TGAATTTCTTTATCCAAGACCTCCACAAATGAAGGAACAGACGAGACGAT
TGTAGATCCTAAACAAACACAAGCAACTATCAACGATCAACCATCCAAAG
AAATTGATGATTTTCTCGACATTGGAAGCCACCAACCTAATGGTAAATGT
AGCTTTTAGGAGAGAGTTATGTCTATTAAATTTCTGCTTTTGCAAGCTCT
TTCAGCAGTCTGAGAGAGCCCCTGAAACCCTCTTCATTCTGGAGTAATAG
CAAGTCACCTGCTGCCTTTGATAGGTGGAACCCGGAGGGAACCGCCCAGC
TGTTCCCTGGAACTGAATGGGTTAACATCTATTAAATTACAGAACATTCA
CTCGTTACCCATATGGAAAAATTCGATCATTTCCCATTTTAAGGATCGGT
TCACTATTTATAACTGTAAAATTGTTCTCTGAACTGTCTTATACAGCCGA
AGAAAATACTTTTACGCTGAAAGAAATGTTGGTTGACGTCATGCTTACTc
agcaaattattttgaaaagacAAGTTTTGCAATATCAAAAGCAAATGGAA
CATTATCAATTGTCTATCAATATGGTTCAGGTAGCtttgttttcatgctg
gtatTTGTGATTTATATTGTATGACAATTACTTCCGAGCCACATGTTTCA
TTGAACTGTCAGTATGGGACCCTCCTGGAACTTCTTGTATACAAGTTATC
GGCCATTCTTCTTGACTAATTCAAATGTTATACATTGTTATACTAAATTC
TTTGATTGTGATTTTGCGTTGTGCAACTTTTTATTGCTTTAACGTTCctt
ttaaaacttgttttctgtttgttttttttttagattcgaACGCCAAGGAC
ATTTTGCATTTTACCGTCGCCGGAAGATAAATCATGGAAAAAGATTTCTT
CATGGGGTAAAGAAACTTTTCGATTGCATTTGTTGTGTGAAGGTTCCAAA
GGAGGTTCTGTTGGAGATATTCATTTCATTCAAGACCATGAAGGATATCT
TGTAAGTttttaaaacagaaaataaattGGCTAACCTCGGGCGTTTTGAA
CGATTGGCTCGTTATTTGGCCAAATTTTGTTCCTCAAGGCTAATTTGTca
aatactcttaggtgccaaataaacgggctaGTTCGAATAAATTGGGGAgt
tagaaaaattttgaaatttcaataaacggggggggggtcctaataaggtc
tgtaggggttggaaaattttagctaaattaacaagcagggggccgtttat
ttggcacctaagagtagaaGTTTAGCATTTACATATTTGACAAACCTTTA
ATCAATTTTGGGAAAGTTTAGTTCCTTGCTATGCTAGTGAAAAACTAATA
TAAAATAGAAATAGGGTTGCCAACCAATATCTCTAGGGCGAAAGGGAgtt
aaagaacttttttttcgagactttGACAACGTCATCTTGACCTTATTTGT
GCCAATACCGTGTTGAACCAAATCAGAAGTGACACTACTCGCAAAGTGGA
ACGCCCTGTTATTAACCGAAGGCGGAATGGGTGATTTAGACGATTTAAAA
CTATGATTTAAACTATTGTTAAATAAACCAGCCACAAGTCTTTAACTTCG
AATTTTCACAAGCACCATATTTACCATTAAAGAACATCCCTTtccacaga
cccggtaggattttttcagtcagtggggatgaaaataacggacttgaact
cgatggggattgatgtCCCCATATATTACTTATGTCTGGggatttaaatt
attttgtttttttcaagtcagGAAATTGAAtagggatgggaaaaatagta
aatattttgcagtgaggattggtttatttaattattttcattatgtacaa
aaattggagggtaattttccaccggggacgatatttttgccaataAAGAC
AGTGTGCAGAATTTTATATCTTACAAATTTTTCAGTTCAAATgatcaaat
tgaaaattttcgacaATCCTTAATCATTTTTCTTCAGATTGAGCAGCCTT
CcatgtttttaaagaaagttttaCCTCTATTGTCGATTGGGATGAAAGTC
TTGTCAACGGCTGCAAAGATTGCTGGAACAGTGATTGGAGCTGGTGGTTT
GGTCCCCAATGCGGATGTCTTGAAGACTTTGGGGATTGTTTCGAAAAAAT
CTGGTGATATTGCTTCTCTTCTACAACAGGTGAAAAGAACTTTATATATT
ATCATCGTTGAGTGTTTCTTTCTCTTTGTTGTTGGTAGAAGTTGaacatt
tttgacaaaaaaactgTAATCgtaattttttatgtttcaggtGCAAGATA
GCATTAGAGAGTGCAATTCTCAAGTTGTCGAGAATCCTGAAATTCAGGTC
ACAACAGGGGCAGCATTACGTTCTTTAGAAGTCTTTTTGAACGAAAATGA
TGAGTTACGTCATTTTGGTGGATTGCAATCGGTTGCTGGTCCTGATGGAC
GATGGGCTTGGGTGTGTGACCAACATGCCAAATTCTAAACAACAAAGACA
TCTATCTAAGATTTAAatcactttttggacctacctccgggtaccccggt
ggaggttctataaattaacccatgtccgttcgttcgtccgtccgtctgtt
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NNNNNNNNNNNNNNgaattttttcagatgataACAGGCAATTGTACATGG
AACAATCTGAATCTTCACCTGTCaaaaatactaacttttttcctGTTGGA
ATGCCCTTTGAGCAACTGAATCCCTGAACATATCATGGctacaaaatcat
aaataatatCATTTAATTTGGAGTTGTGAgaccttttcaagccaaaaaat
aatttccagAACTTAGTTTGGTATTTGTTTATCTTCCAAAtctattaaaa
agttctcatgaaagttttttgaagtcTGATTGCAAAAAGTATCAACCCAA
AAATGCTTCATTCCTCCAAATAATCAAGCAGATTACCCAGAGAGAAGTAA
TCATTACATAAGAGAACATACCTGTAATAATTTGGTTGGTGTTTGAGCCT
TCATCTtgaacaaaaataagaaaacatccaagcaaaatcagttattgtac
aaaatagaccttttttcaaagaggacgtcctgttgaataattatgtagtc
cagccataaaaacaatgatagagccatgcataattactgtatcatgcata
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ATTTGAGCCTAATTGGAGATGGTTCTACGTGAATGTCCCGTACGTAACAC
CTATAAAATTGGGCATATCTCGCTGAAAgtttggtttaaaattttttttt
ttttagttttttgtaaGTTTTCCAGACCCCTCTCTAAAAATGATTGCTAA
ATTCTCTGGGTCTACAtcgtttttccaaaaaactgcTTAGAAATAAAATT
TGTCCCGTACGTAACTTTGTCCTGTACGTAACAACAAATTTCTATTAAAT
ACACAGCTGTTTCTTAAACTATATTTTAGTGTTTGCTTCCAATTTTATTG
AACATATGATGGCTGTTATCAATCACCTACCTTCGAGACAACATTTTTCA
GTCAGTTGAGTGATTGAGAGGGTCATTGATAGCTGCGAGGGAGTAGTACA
ATTCAAAAGGTTGCAATACAGAGTCCAATCTATATCTATAGTGTGACCCA
CTAAATGTGTAACCTGAGATTTCACTGAAACCCTTTTAGTTTTTTCTCTA
GCTGTTTCTCTGACTTTATAAGTTatatggtttgaaattttagctgaCCC
TTTTTCATGATATATAGAGCCTAGAGATGTGAGGGAGTGTATGTagtatt
ttgaaagtttgtccCGTACGTAACAACAAAGAACTTATGATTATCAGCAA
TAGTAACATATTCATTTGAGGCTAGATTGCTAACATAAGCAAATTATGAT
AAAtcttatgtttgttttttaaagtaGAATAAAACAAGATAATAATGAAA
CCAGTCAATCAACGAGTAAGAGAGCATCGACAGCGTATGAAAGATTCATT
GGGAGGTGAAGTATTTAAAGAGATGAAAAGAGGAAGGATAGAGAAGATCA
gagaaaaagcagaaaaaacaacgACTTAAAAATGATGAGGCAAAAGAGGA
GTATTGCAAGAAGGGAAGAGCGAGGTAAGAGAAAGTGAGGGACAAGCATC
TGAGTTATCCTGAGTTATCAATTTTACAAAGAAATAAACTAATTGGCAAG
AAAAAGAGAAAGCGAAATTCTGAAAACATGAGAAAAGAACAGgacacttt
aaaaattaaagttaaGCTTACATACAACAAGAACAGAAGGGTTAAAAGAC
AGTAGGCAAGCAATGAGAATGAAACCAGTCAGTCTGCCACCCCAGAATCT
GTAAACCTTGATACATTAGTCATAAACAGTGTATCACCTCATGGAAAAAT
ATGCGCCCTACAAAGATTAGCCTTGAGCAATCCTCCATTAGAAGTCAGTC
CGCTTTACGTCTCGATAAGGTGGAAAGTAGGCTCAAAGCCAAAAAAGACA
CCCAATCTTTTCTTCACGAGAAGGTCATAAATTTCATGAATCAGGACATT
AATTCTGTTGTTGTTCCCGATGAAaagaaaagtcataaaaatctgcgATA
CAGATGTCATCAATAAAAACTCTATGGCATAAGTTTGAAGCGGACAATTA
TGACAAGGAAATTTCATATGCTCAATTCTATGTTTCAGAAAATATTATTA
AGCAGAAGCCAGAGGACTGGGGTGCATGCTTATGCATGACCTGCATGACA
AGTTTAAACTATCatgtataaaaaaaactttacccAATATTAGTTTAACN
GAAATATTATTAAGCCGAAGCCAGAGGACTGGGGTGCATGCTTATGCATG
ACCTGCGTGAACCCTGAGTTTAAACTAACATGTATAAAAGAAACTTTACC
CAATATCAATTTAACAATCGAAGATCTTTCAGAGGTGACAATCCAGATAG
TCAAAACAAATTGGAAGAATTGCACGCCAAAATTAAAGCATGTAAAAAAG
AGTTTAAGTACTTGGAGTgggcaaaagaaaaaacatctgGGACAAANNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTGGAAAAGTTTCAG
ACTTCcaagcaatttttaaaaattttgttacgTACGGGACATTTTTTGTC
ACCCCCAGTGGCTTTAAAGATGCTATTTTATACTGAGGATTAGTTGACCT
TACagtgttttattgtttttttctcctcATATATAGCTGTGACTATAATT
TAATCAGTTTAGGTGTTTCATGTACTTCTATTTTAGAGTTTATCATAGTT
AATATGGGGTAGAATAGGATTTTCCgttaaaaaattcataaataNNNNNN
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NNNTCAACTCAgggttttgataataaaaacatggcgtaataagtttttta
gagatttggcagatgatcaaaagaaatctgcagGAATACATTTTACATGA
AACTTTAATGAACTTGGTACATTtcgttttattcaattaacaaaaaaagg
ttagaaatatttactggtcctatgaaaaatgttcatgggaaaggcttgaa
aataatatgtaatattagattttgttgaatttcaatattaaagAGAGGTC
GGTTGTaatcaaggactaccttaaaggaataaattatgacggaaataaaa
tttggcggatttaccaggaattccgccatacctcaaattaaattcccgcc
aaatttaatttatctcgtgtattctccaaatttgtgctatattttcaggc
cttaaaaacaggtttttgcttatttggtaacaatttttggccaaaaattt
ccttcaaccgccaaataaaattctcgcctaatttcttttttctagcaatc
cgtcaaattaaattcctctgaaaaaactttttcaaccacccgccaaattg
aattcctgccaaaatttctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTTGAAACAATGTCCAGAaatattcat
ctataaaataataaaatttgacacttaatacagcttatgaaaaaaaatct
gtcaatgttactttagaCTGTATTACTACttgattttatcctcaaaatag
gttaaaaactgaagactctatggaaaactttccaaaaattttgttatgta
gCAAATCAGCACATTATGACGACagtgaaacataatctttaggtcagaat
aaattcaactgaaatccaaaaaagtctaACATGTCATAATTGATATTGAT
AATCTAGATGACAGATTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttcgtttttaaagtgcacca
gggcttatatcccccgtcaacgcgtccatcagaatcatcaatagcgtaag
ggggttagataagccatggagtcgagggtggaatttttgtacaattattg
tcacttttttcttattttcatctgatgttaatcattaggtaggtccattc
agcatgttgcttgtttaaccTATACGGATTGTTTTATATAGAAATGACAG
TTACGATATTACGTAATTATGCAAACTCGTCCCAGCCCTCGCATGGATAT
GTGTCCCAGCCGTAATCTGAATTAGTTTTGTTTAGGTTATTAGTTGTCat
aattttgattcattttgatTTAGTCTNCGgttattttacattttctcgaa
ttttcatcaaaagtttttaaatttttgatttagTCTATCATTTGGGCAAA
AAGTATGATGGTGAAAGCAGGTACTCGTGTTGAAAGAACCCATAAACCTT
TCGAAGGTAGAAGGCAGATACGGAGGCGAGCAAACGTAAAAACTACAAAG
TTCTTTCACTTTCCTAAGAGAAAATGTTGAACAGGATAAACTATGTGTCT
ATGAACAAGGCCGATCTAGGTTAGATGTTTTAATAAAGCCATATCTACAT
CAAAGGGATAAATCTTCGCGGGCAAACATTTTTGCGagacagtttgaaaa
ttttgcgc

Coding sequence (CDS) from alignment at scaffold_243:935024..949831+

>TCONS_00054586 ID=TCONS_00054586|Name=TCONS_00054586|organism=Clytia hemisphaerica|type=CDS|length=6909bp|location=Sequence derived from alignment at scaffold_243:935024..949831+ (Clytia hemisphaerica)
ATGGTCTTATGGAACAGCTGTTTGACCGAAGAACCTGCAAAAAAATTGTA
TGAAGTTTTGAAAGACAGACCGAAACACTTCTCGTACCTTCATATAGATT
TGCATGGCTCCAATTTCGTTTCAAATGAAACTATCATGCTCTTTGAGAAT
GAGCTCAAAATTAAGACCTCCACAAATGAAGGAACAGACGAGACGATTGT
AGATCCTAAACAAACACAAGCAACTATCAACGATCAACCATCCAAAGAAA
TTGATGATTTTCTCGACATTGGAAGCCACCAACCTAATGCCGAAGAAAAT
ACTTTTACGCTGAAAGAAATGTTGGTTGACGTCATGCTTACTcagcaaat
tattttgaaaagacAAGTTTTGCAATATCAAAAGCAAATGGAACATTATC
AATTGTCTATCAATATGGTTCAGattcgaACGCCAAGGACATTTTGCATT
TTACCGTCGCCGGAAGATAAATCATGGAAAAAGATTTCTTCATGGGGTAA
AGAAACTTTTCGATTGCATTTGTTGTGTGAAGGTTCCAAAGGAGGTTCTG
TTGGAGATATTCATTTCATTCAAGACCATGAAGGATATCTTATTGAGCAG
CCTTCcatgtttttaaagaaagttttaCCTCTATTGTCGATTGGGATGAA
AGTCTTGTCAACGGCTGCAAAGATTGCTGGAACAGTGATTGGAGCTGGTG
GTTTGGTCCCCAATGCGGATGTCTTGAAGACTTTGGGGATTGTTTCGAAA
AAATCTGGTGATATTGCTTCTCTTCTACAACAGgtGCAAGATAGCATTAG
AGAGTGCAATTCTCAAGTTGTCGAGAATCCTGAAATTCAGTCTATCATTT
GGGCAAAAAGTATGATGGTGAAAGCAGGTACTCGTGTTGAAAGAACCCAT
AAACCTTTCGAAGGTAGAAGGCAGATACGGAGGCGAGCAAACGTAAAAAC
TACAAAGTTCTTTCACTTTCCTAAGAGAAAATGTTGAATGGTCTTATGGA
ACAGCTGTTTGACCGAAGAACCTGCAAAAAAATTGTATGAAGTTTTGAAA
GACAGACCGAAACACTTCTCGTACCTTCATATAGATTTGCATGGCTCCAA
TTTCGTTTCAAATGAAACTATCATGCTCTTTGAGAATGAGCTCAAAATTA
AGACCTCCACAAATGAAGGAACAGACGAGACGATTGTAGATCCTAAACAA
ACACAAGCAACTATCAACGATCAACCATCCAAAGAAATTGATGATTTTCT
CGACATTGGAAGCCACCAACCTAATGCCGAAGAAAATACTTTTACGCTGA
AAGAAATGTTGGTTGACGTCATGCTTACTcagcaaattattttgaaaaga
cAAGTTTTGCAATATCAAAAGCAAATGGAACATTATCAATTGTCTATCAA
TATGGTTCAGattcgaACGCCAAGGACATTTTGCATTTTACCGTCGCCGG
AAGATAAATCATGGAAAAAGATTTCTTCATGGGGTAAAGAAACTTTTCGA
TTGCATTTGTTGTGTGAAGGTTCCAAAGGAGGTTCTGTTGGAGATATTCA
TTTCATTCAAGACCATGAAGGATATCTTATTGAGCAGCCTTCcatgtttt
taaagaaagttttaCCTCTATTGTCGATTGGGATGAAAGTCTTGTCAACG
GCTGCAAAGATTGCTGGAACAGTGATTGGAGCTGGTGGTTTGGTCCCCAA
TGCGGATGTCTTGAAGACTTTGGGGATTGTTTCGAAAAAATCTGGTGATA
TTGCTTCTCTTCTACAACAGgtGCAAGATAGCATTAGAGAGTGCAATTCT
CAAGTTGTCGAGAATCCTGAAATTCAGTCTATCATTTGGGCAAAAAGTAT
GATGGTGAAAGCAGGTACTCGTGTTGAAAGAACCCATAAACCTTTCGAAG
GTAGAAGGCAGATACGGAGGCGAGCAAACGTAAAAACTACAAAGTTCTTT
CACTTTCCTAAGAGAAAATGTTGAATGGTCTTATGGAACAGCTGTTTGAC
CGAAGAACCTGCAAAAAAATTGTATGAAGTTTTGAAAGACAGACCGAAAC
ACTTCTCGTACCTTCATATAGATTTGCATGGCTCCAATTTCGTTTCAAAT
GAAACTATCATGCTCTTTGAGAATGAGCTCAAAATTAAGACCTCCACAAA
TGAAGGAACAGACGAGACGATTGTAGATCCTAAACAAACACAAGCAACTA
TCAACGATCAACCATCCAAAGAAATTGATGATTTTCTCGACATTGGAAGC
CACCAACCTAATGCCGAAGAAAATACTTTTACGCTGAAAGAAATGTTGGT
TGACGTCATGCTTACTcagcaaattattttgaaaagacAAGTTTTGCAAT
ATCAAAAGCAAATGGAACATTATCAATTGTCTATCAATATGGTTCAGatt
cgaACGCCAAGGACATTTTGCATTTTACCGTCGCCGGAAGATAAATCATG
GAAAAAGATTTCTTCATGGGGTAAAGAAACTTTTCGATTGCATTTGTTGT
GTGAAGGTTCCAAAGGAGGTTCTGTTGGAGATATTCATTTCATTCAAGAC
CATGAAGGATATCTTATTGAGCAGCCTTCcatgtttttaaagaaagtttt
aCCTCTATTGTCGATTGGGATGAAAGTCTTGTCAACGGCTGCAAAGATTG
CTGGAACAGTGATTGGAGCTGGTGGTTTGGTCCCCAATGCGGATGTCTTG
AAGACTTTGGGGATTGTTTCGAAAAAATCTGGTGATATTGCTTCTCTTCT
ACAACAGgtGCAAGATAGCATTAGAGAGTGCAATTCTCAAGTTGTCGAGA
ATCCTGAAATTCAGTCTATCATTTGGGCAAAAAGTATGATGGTGAAAGCA
GGTACTCGTGTTGAAAGAACCCATAAACCTTTCGAAGGTAGAAGGCAGAT
ACGGAGGCGAGCAAACGTAAAAACTACAAAGTTCTTTCACTTTCCTAAGA
GAAAATGTTGAATGGTCTTATGGAACAGCTGTTTGACCGAAGAACCTGCA
AAAAAATTGTATGAAGTTTTGAAAGACAGACCGAAACACTTCTCGTACCT
TCATATAGATTTGCATGGCTCCAATTTCGTTTCAAATGAAACTATCATGC
TCTTTGAGAATGAGCTCAAAATTAAGACCTCCACAAATGAAGGAACAGAC
GAGACGATTGTAGATCCTAAACAAACACAAGCAACTATCAACGATCAACC
ATCCAAAGAAATTGATGATTTTCTCGACATTGGAAGCCACCAACCTAATG
CCGAAGAAAATACTTTTACGCTGAAAGAAATGTTGGTTGACGTCATGCTT
ACTcagcaaattattttgaaaagacAAGTTTTGCAATATCAAAAGCAAAT
GGAACATTATCAATTGTCTATCAATATGGTTCAGattcgaACGCCAAGGA
CATTTTGCATTTTACCGTCGCCGGAAGATAAATCATGGAAAAAGATTTCT
TCATGGGGTAAAGAAACTTTTCGATTGCATTTGTTGTGTGAAGGTTCCAA
AGGAGGTTCTGTTGGAGATATTCATTTCATTCAAGACCATGAAGGATATC
TTATTGAGCAGCCTTCcatgtttttaaagaaagttttaCCTCTATTGTCG
ATTGGGATGAAAGTCTTGTCAACGGCTGCAAAGATTGCTGGAACAGTGAT
TGGAGCTGGTGGTTTGGTCCCCAATGCGGATGTCTTGAAGACTTTGGGGA
TTGTTTCGAAAAAATCTGGTGATATTGCTTCTCTTCTACAACAGgtGCAA
GATAGCATTAGAGAGTGCAATTCTCAAGTTGTCGAGAATCCTGAAATTCA
GTCTATCATTTGGGCAAAAAGTATGATGGTGAAAGCAGGTACTCGTGTTG
AAAGAACCCATAAACCTTTCGAAGGTAGAAGGCAGATACGGAGGCGAGCA
AACGTAAAAACTACAAAGTTCTTTCACTTTCCTAAGAGAAAATGTTGAAT
GGTCTTATGGAACAGCTGTTTGACCGAAGAACCTGCAAAAAAATTGTATG
AAGTTTTGAAAGACAGACCGAAACACTTCTCGTACCTTCATATAGATTTG
CATGGCTCCAATTTCGTTTCAAATGAAACTATCATGCTCTTTGAGAATGA
GCTCAAAATTAAGACCTCCACAAATGAAGGAACAGACGAGACGATTGTAG
ATCCTAAACAAACACAAGCAACTATCAACGATCAACCATCCAAAGAAATT
GATGATTTTCTCGACATTGGAAGCCACCAACCTAATGCCGAAGAAAATAC
TTTTACGCTGAAAGAAATGTTGGTTGACGTCATGCTTACTcagcaaatta
ttttgaaaagacAAGTTTTGCAATATCAAAAGCAAATGGAACATTATCAA
TTGTCTATCAATATGGTTCAGattcgaACGCCAAGGACATTTTGCATTTT
ACCGTCGCCGGAAGATAAATCATGGAAAAAGATTTCTTCATGGGGTAAAG
AAACTTTTCGATTGCATTTGTTGTGTGAAGGTTCCAAAGGAGGTTCTGTT
GGAGATATTCATTTCATTCAAGACCATGAAGGATATCTTATTGAGCAGCC
TTCcatgtttttaaagaaagttttaCCTCTATTGTCGATTGGGATGAAAG
TCTTGTCAACGGCTGCAAAGATTGCTGGAACAGTGATTGGAGCTGGTGGT
TTGGTCCCCAATGCGGATGTCTTGAAGACTTTGGGGATTGTTTCGAAAAA
ATCTGGTGATATTGCTTCTCTTCTACAACAGgtGCAAGATAGCATTAGAG
AGTGCAATTCTCAAGTTGTCGAGAATCCTGAAATTCAGTCTATCATTTGG
GCAAAAAGTATGATGGTGAAAGCAGGTACTCGTGTTGAAAGAACCCATAA
ACCTTTCGAAGGTAGAAGGCAGATACGGAGGCGAGCAAACGTAAAAACTA
CAAAGTTCTTTCACTTTCCTAAGAGAAAATGTTGAATGGTCTTATGGAAC
AGCTGTTTGACCGAAGAACCTGCAAAAAAATTGTATGAAGTTTTGAAAGA
CAGACCGAAACACTTCTCGTACCTTCATATAGATTTGCATGGCTCCAATT
TCGTTTCAAATGAAACTATCATGCTCTTTGAGAATGAGCTCAAAATTAAG
ACCTCCACAAATGAAGGAACAGACGAGACGATTGTAGATCCTAAACAAAC
ACAAGCAACTATCAACGATCAACCATCCAAAGAAATTGATGATTTTCTCG
ACATTGGAAGCCACCAACCTAATGCCGAAGAAAATACTTTTACGCTGAAA
GAAATGTTGGTTGACGTCATGCTTACTcagcaaattattttgaaaagacA
AGTTTTGCAATATCAAAAGCAAATGGAACATTATCAATTGTCTATCAATA
TGGTTCAGattcgaACGCCAAGGACATTTTGCATTTTACCGTCGCCGGAA
GATAAATCATGGAAAAAGATTTCTTCATGGGGTAAAGAAACTTTTCGATT
GCATTTGTTGTGTGAAGGTTCCAAAGGAGGTTCTGTTGGAGATATTCATT
TCATTCAAGACCATGAAGGATATCTTATTGAGCAGCCTTCcatgttttta
aagaaagttttaCCTCTATTGTCGATTGGGATGAAAGTCTTGTCAACGGC
TGCAAAGATTGCTGGAACAGTGATTGGAGCTGGTGGTTTGGTCCCCAATG
CGGATGTCTTGAAGACTTTGGGGATTGTTTCGAAAAAATCTGGTGATATT
GCTTCTCTTCTACAACAGgtGCAAGATAGCATTAGAGAGTGCAATTCTCA
AGTTGTCGAGAATCCTGAAATTCAGTCTATCATTTGGGCAAAAAGTATGA
TGGTGAAAGCAGGTACTCGTGTTGAAAGAACCCATAAACCTTTCGAAGGT
AGAAGGCAGATACGGAGGCGAGCAAACGTAAAAACTACAAAGTTCTTTCA
CTTTCCTAAGAGAAAATGTTGAATGGTCTTATGGAACAGCTGTTTGACCG
AAGAACCTGCAAAAAAATTGTATGAAGTTTTGAAAGACAGACCGAAACAC
TTCTCGTACCTTCATATAGATTTGCATGGCTCCAATTTCGTTTCAAATGA
AACTATCATGCTCTTTGAGAATGAGCTCAAAATTAAGACCTCCACAAATG
AAGGAACAGACGAGACGATTGTAGATCCTAAACAAACACAAGCAACTATC
AACGATCAACCATCCAAAGAAATTGATGATTTTCTCGACATTGGAAGCCA
CCAACCTAATGCCGAAGAAAATACTTTTACGCTGAAAGAAATGTTGGTTG
ACGTCATGCTTACTcagcaaattattttgaaaagacAAGTTTTGCAATAT
CAAAAGCAAATGGAACATTATCAATTGTCTATCAATATGGTTCAGattcg
aACGCCAAGGACATTTTGCATTTTACCGTCGCCGGAAGATAAATCATGGA
AAAAGATTTCTTCATGGGGTAAAGAAACTTTTCGATTGCATTTGTTGTGT
GAAGGTTCCAAAGGAGGTTCTGTTGGAGATATTCATTTCATTCAAGACCA
TGAAGGATATCTTATTGAGCAGCCTTCcatgtttttaaagaaagttttaC
CTCTATTGTCGATTGGGATGAAAGTCTTGTCAACGGCTGCAAAGATTGCT
GGAACAGTGATTGGAGCTGGTGGTTTGGTCCCCAATGCGGATGTCTTGAA
GACTTTGGGGATTGTTTCGAAAAAATCTGGTGATATTGCTTCTCTTCTAC
AACAGgtGCAAGATAGCATTAGAGAGTGCAATTCTCAAGTTGTCGAGAAT
CCTGAAATTCAGTCTATCATTTGGGCAAAAAGTATGATGGTGAAAGCAGG
TACTCGTGTTGAAAGAACCCATAAACCTTTCGAAGGTAGAAGGCAGATAC
GGAGGCGAGCAAACGTAAAAACTACAAAGTTCTTTCACTTTCCTAAGAGA
AAATGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034403XLOC_034403Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054586-proteinTCONS_00054586-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054586-exon-scaffold_243-1491911889:935024..935397TCONS_00054586-exon-scaffold_243-1491911889:935024..935397Clytia hemisphaericaexon
TCONS_00054586-exon-scaffold_243-1510915933:935024..935397TCONS_00054586-exon-scaffold_243-1510915933:935024..935397Clytia hemisphaericaexon
TCONS_00054586-exon-scaffold_243-1575043694:935024..935397TCONS_00054586-exon-scaffold_243-1575043694:935024..935397Clytia hemisphaericaexon
TCONS_00054586-exon-scaffold_243-1491911889:935842..935965TCONS_00054586-exon-scaffold_243-1491911889:935842..935965Clytia hemisphaericaexon
TCONS_00054586-exon-scaffold_243-1510915933:935842..935965TCONS_00054586-exon-scaffold_243-1510915933:935842..935965Clytia hemisphaericaexon
TCONS_00054586-exon-scaffold_243-1575043694:935842..935965TCONS_00054586-exon-scaffold_243-1575043694:935842..935965Clytia hemisphaericaexon
TCONS_00054586-exon-scaffold_243-1491911889:936270..936403TCONS_00054586-exon-scaffold_243-1491911889:936270..936403Clytia hemisphaericaexon
TCONS_00054586-exon-scaffold_243-1510915933:936270..936403TCONS_00054586-exon-scaffold_243-1510915933:936270..936403Clytia hemisphaericaexon
TCONS_00054586-exon-scaffold_243-1575043694:936270..936403TCONS_00054586-exon-scaffold_243-1575043694:936270..936403Clytia hemisphaericaexon
TCONS_00054586-exon-scaffold_243-1491911889:936657..936824TCONS_00054586-exon-scaffold_243-1491911889:936657..936824Clytia hemisphaericaexon
TCONS_00054586-exon-scaffold_243-1510915933:936657..936824TCONS_00054586-exon-scaffold_243-1510915933:936657..936824Clytia hemisphaericaexon
TCONS_00054586-exon-scaffold_243-1575043694:936657..936824TCONS_00054586-exon-scaffold_243-1575043694:936657..936824Clytia hemisphaericaexon
TCONS_00054586-exon-scaffold_243-1491911889:937811..938002TCONS_00054586-exon-scaffold_243-1491911889:937811..938002Clytia hemisphaericaexon
TCONS_00054586-exon-scaffold_243-1510915933:937811..938002TCONS_00054586-exon-scaffold_243-1510915933:937811..938002Clytia hemisphaericaexon
TCONS_00054586-exon-scaffold_243-1575043694:937811..938002TCONS_00054586-exon-scaffold_243-1575043694:937811..938002Clytia hemisphaericaexon
TCONS_00054586-exon-scaffold_243-1491911889:938114..938170TCONS_00054586-exon-scaffold_243-1491911889:938114..938170Clytia hemisphaericaexon
TCONS_00054586-exon-scaffold_243-1510915933:938114..938170TCONS_00054586-exon-scaffold_243-1510915933:938114..938170Clytia hemisphaericaexon
TCONS_00054586-exon-scaffold_243-1575043694:938114..938170TCONS_00054586-exon-scaffold_243-1575043694:938114..938170Clytia hemisphaericaexon
TCONS_00054586-exon-scaffold_243-1491911889:949557..949831TCONS_00054586-exon-scaffold_243-1491911889:949557..949831Clytia hemisphaericaexon
TCONS_00054586-exon-scaffold_243-1510915933:949557..949831TCONS_00054586-exon-scaffold_243-1510915933:949557..949831Clytia hemisphaericaexon
TCONS_00054586-exon-scaffold_243-1575043694:949557..949831TCONS_00054586-exon-scaffold_243-1575043694:949557..949831Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:935024..949831 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.256417	0.546562	0.0532362	0	0	0	0.818272	0.259836	0.375408	0.882001	0.43684	0	0	1.03515	1.04245	0.560543	0.416093	0	0.23673	0.367238	0	0	0	0.14881	0.201582	0.58706	0.401522	3.65151	2.74208
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054586 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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