TCONS_00054585 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054585
Unique NameTCONS_00054585
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054585 ID=TCONS_00054585|Name=TCONS_00054585|organism=Clytia hemisphaerica|type=transcript|length=1314bp
gttctgaatgattgtttaatggtcacgtcacgtagatatcaattataaat
gtgttaaatgcataaccaggtaggtccataaaagtatcacttgttcataT
TTAGAAACACGCTACCCTTCTCGAGCTCGACTTAAGTTTCAATGACGTAG
ACGATTCACTTTGTGGGTTGATTTCTGAAATCATCTCTAGAAACTACAAA
CTACAAAAGATGGTCTTATGGAACAGCTGTTTGACCGAAGAACCTGCAAA
AAAATTGTATGAAGTTTTGAAAGACAGACCGAAACACTTCTCGTACCTTC
ATATAGATTTGCATGGCTCCAATTTCGTTTCAAATGAAACTATCATGCTC
TTTGAGAATGAGCTCAAAATTAAGACCTCCACAAATGAAGGAACAGACGA
GACGATTGTAGATCCTAAACAAACACAAGCAACTATCAACGATCAACCAT
CCAAAGAAATTGATGATTTTCTCGACATTGGAAGCCACCAACCTAATGCC
GAAGAAAATACTTTTACGCTGAAAGAAATGTTGGTTGACGTCATGCTTAC
TcagcaaattattttgaaaagacAAGTTTTGCAATATCAAAAGCAAATGG
AACATTATCAATTGTCTATCAATATGGTTCAGattcgaACGCCAAGGACA
TTTTGCATTTTACCGTCGCCGGAAGATAAATCATGGAAAAAGATTTCTTC
ATGGGGTAAAGAAACTTTTCGATTGCATTTGTTGTGTGAAGGTTCCAAAG
GAGGTTCTGTTGGAGATATTCATTTCATTCAAGACCATGAAGGATATCTT
ATTGAGCAGCCTTCcatgtttttaaagaaagttttaCCTCTATTGTCGAT
TGGGATGAAAGTCTTGTCAACGGCTGCAAAGATTGCTGGAACAGTGATTG
GAGCTGGTGGTTTGGTCCCCAATGCGGATGTCTTGAAGACTTTGGGGATT
GTTTCGAAAAAATCTGGTGATATTGCTTCTCTTCTACAACAGgtGCAAGA
TAGCATTAGAGAGTGCAATTCTCAAGTTGTCGAGAATCCTGAAATTCAGG
TCACAACAGGGGCAGCATTACGTTCTTTAGAAGTCTTTTTGAACGAAAAT
GATGAGTTACGTCATTTTGGTGGATTGCAATCGGTTGCTGGTCCTGATGG
ACGATGGGCTTGGGTGTGTGACCAACATGCCAAATTCTAAACAACAAAGA
CATCTATCTAAGATTTAAatcactttttggacctacctccgggtaccccg
gtggaggttctataaattaacccatgtccgttcgttcgtccgtccgtctg
ttaccagcttttct
Run BLAST on NCBI

transcript from alignment at scaffold_243:935024..938435+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054585 ID=TCONS_00054585|Name=TCONS_00054585|organism=Clytia hemisphaerica|type=transcript|length=3412bp|location=Sequence derived from alignment at scaffold_243:935024..938435+ (Clytia hemisphaerica)
gttctgaatgattgtttaatggtcacgtcacgtagatatcaattataaat
gtgttaaatgcataaccaggtaggtccataaaagtatcacttgttcataT
TTAGAAACACGCTACCCTTCTCGAGCTCGACTTAAGTTTCAATGACGTAG
ACGATTCACTTTGTGGGTTGATTTCTGAAATCATCTCTAGAAACTACAAA
CTACAAAAGATGGTCTTATGGAACAGCTGTTTGACCGAAGAACCTGCAAA
AAAATTGTATGAAGTTTTGAAAGACAGACCGAAACACTTCTCGTACCTTC
ATATAGATTTGCATGGCTCCAATTTCGTTTCAAATGAAACTATCATGCTC
TTTGAGAATGAGCTCAAAATTAAGGTATTGAATTGTATTAAATAAAACAT
GAggatttttatttgataaaaatttttagTCTCAGTTTTACCGGAAAGTT
AGGTTAGTTCCACGAAAATTGTTTGCCAAAATCTCTTTTTCACTCCTTTC
TCTTGGCCGATTCACCTCTGTCTTGTTTCTTCATTTACGCAAGATTTGCA
GACCTCCCggggaaatcccacttgttcgacgGTACGTTTGTTCAACAAAT
TTGTAAAGATGTCGAACTGATGCATTGTCGAACAACTGTGTGTGACATAT
CACCGACCTCCCTGTGTTGATACTCCTTGTCAAAGCCTTAGGATCTCGTT
AGTAAGATATAAGTATACCAATTNTGATACTCCTGATACTCTTGATACTC
CTTGTCAAAGCCTTAGGATCTCGTTAGTAAGATATAAGTATACCAATTAT
TGAATTTCTTTATCCAAGACCTCCACAAATGAAGGAACAGACGAGACGAT
TGTAGATCCTAAACAAACACAAGCAACTATCAACGATCAACCATCCAAAG
AAATTGATGATTTTCTCGACATTGGAAGCCACCAACCTAATGGTAAATGT
AGCTTTTAGGAGAGAGTTATGTCTATTAAATTTCTGCTTTTGCAAGCTCT
TTCAGCAGTCTGAGAGAGCCCCTGAAACCCTCTTCATTCTGGAGTAATAG
CAAGTCACCTGCTGCCTTTGATAGGTGGAACCCGGAGGGAACCGCCCAGC
TGTTCCCTGGAACTGAATGGGTTAACATCTATTAAATTACAGAACATTCA
CTCGTTACCCATATGGAAAAATTCGATCATTTCCCATTTTAAGGATCGGT
TCACTATTTATAACTGTAAAATTGTTCTCTGAACTGTCTTATACAGCCGA
AGAAAATACTTTTACGCTGAAAGAAATGTTGGTTGACGTCATGCTTACTc
agcaaattattttgaaaagacAAGTTTTGCAATATCAAAAGCAAATGGAA
CATTATCAATTGTCTATCAATATGGTTCAGGTAGCtttgttttcatgctg
gtatTTGTGATTTATATTGTATGACAATTACTTCCGAGCCACATGTTTCA
TTGAACTGTCAGTATGGGACCCTCCTGGAACTTCTTGTATACAAGTTATC
GGCCATTCTTCTTGACTAATTCAAATGTTATACATTGTTATACTAAATTC
TTTGATTGTGATTTTGCGTTGTGCAACTTTTTATTGCTTTAACGTTCctt
ttaaaacttgttttctgtttgttttttttttagattcgaACGCCAAGGAC
ATTTTGCATTTTACCGTCGCCGGAAGATAAATCATGGAAAAAGATTTCTT
CATGGGGTAAAGAAACTTTTCGATTGCATTTGTTGTGTGAAGGTTCCAAA
GGAGGTTCTGTTGGAGATATTCATTTCATTCAAGACCATGAAGGATATCT
TGTAAGTttttaaaacagaaaataaattGGCTAACCTCGGGCGTTTTGAA
CGATTGGCTCGTTATTTGGCCAAATTTTGTTCCTCAAGGCTAATTTGTca
aatactcttaggtgccaaataaacgggctaGTTCGAATAAATTGGGGAgt
tagaaaaattttgaaatttcaataaacggggggggggtcctaataaggtc
tgtaggggttggaaaattttagctaaattaacaagcagggggccgtttat
ttggcacctaagagtagaaGTTTAGCATTTACATATTTGACAAACCTTTA
ATCAATTTTGGGAAAGTTTAGTTCCTTGCTATGCTAGTGAAAAACTAATA
TAAAATAGAAATAGGGTTGCCAACCAATATCTCTAGGGCGAAAGGGAgtt
aaagaacttttttttcgagactttGACAACGTCATCTTGACCTTATTTGT
GCCAATACCGTGTTGAACCAAATCAGAAGTGACACTACTCGCAAAGTGGA
ACGCCCTGTTATTAACCGAAGGCGGAATGGGTGATTTAGACGATTTAAAA
CTATGATTTAAACTATTGTTAAATAAACCAGCCACAAGTCTTTAACTTCG
AATTTTCACAAGCACCATATTTACCATTAAAGAACATCCCTTtccacaga
cccggtaggattttttcagtcagtggggatgaaaataacggacttgaact
cgatggggattgatgtCCCCATATATTACTTATGTCTGGggatttaaatt
attttgtttttttcaagtcagGAAATTGAAtagggatgggaaaaatagta
aatattttgcagtgaggattggtttatttaattattttcattatgtacaa
aaattggagggtaattttccaccggggacgatatttttgccaataAAGAC
AGTGTGCAGAATTTTATATCTTACAAATTTTTCAGTTCAAATgatcaaat
tgaaaattttcgacaATCCTTAATCATTTTTCTTCAGATTGAGCAGCCTT
CcatgtttttaaagaaagttttaCCTCTATTGTCGATTGGGATGAAAGTC
TTGTCAACGGCTGCAAAGATTGCTGGAACAGTGATTGGAGCTGGTGGTTT
GGTCCCCAATGCGGATGTCTTGAAGACTTTGGGGATTGTTTCGAAAAAAT
CTGGTGATATTGCTTCTCTTCTACAACAGGTGAAAAGAACTTTATATATT
ATCATCGTTGAGTGTTTCTTTCTCTTTGTTGTTGGTAGAAGTTGaacatt
tttgacaaaaaaactgTAATCgtaattttttatgtttcaggtGCAAGATA
GCATTAGAGAGTGCAATTCTCAAGTTGTCGAGAATCCTGAAATTCAGGTC
ACAACAGGGGCAGCATTACGTTCTTTAGAAGTCTTTTTGAACGAAAATGA
TGAGTTACGTCATTTTGGTGGATTGCAATCGGTTGCTGGTCCTGATGGAC
GATGGGCTTGGGTGTGTGACCAACATGCCAAATTCTAAACAACAAAGACA
TCTATCTAAGATTTAAatcactttttggacctacctccgggtaccccggt
ggaggttctataaattaacccatgtccgttcgttcgtccgtccgtctgtt
accagcttttct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034403XLOC_034403Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054585-exon-scaffold_243-1491911889:935024..935397TCONS_00054585-exon-scaffold_243-1491911889:935024..935397Clytia hemisphaericaexon
TCONS_00054585-exon-scaffold_243-1510915933:935024..935397TCONS_00054585-exon-scaffold_243-1510915933:935024..935397Clytia hemisphaericaexon
TCONS_00054585-exon-scaffold_243-1575043694:935024..935397TCONS_00054585-exon-scaffold_243-1575043694:935024..935397Clytia hemisphaericaexon
TCONS_00054585-exon-scaffold_243-1491911889:935842..935965TCONS_00054585-exon-scaffold_243-1491911889:935842..935965Clytia hemisphaericaexon
TCONS_00054585-exon-scaffold_243-1510915933:935842..935965TCONS_00054585-exon-scaffold_243-1510915933:935842..935965Clytia hemisphaericaexon
TCONS_00054585-exon-scaffold_243-1575043694:935842..935965TCONS_00054585-exon-scaffold_243-1575043694:935842..935965Clytia hemisphaericaexon
TCONS_00054585-exon-scaffold_243-1491911889:936270..936403TCONS_00054585-exon-scaffold_243-1491911889:936270..936403Clytia hemisphaericaexon
TCONS_00054585-exon-scaffold_243-1510915933:936270..936403TCONS_00054585-exon-scaffold_243-1510915933:936270..936403Clytia hemisphaericaexon
TCONS_00054585-exon-scaffold_243-1575043694:936270..936403TCONS_00054585-exon-scaffold_243-1575043694:936270..936403Clytia hemisphaericaexon
TCONS_00054585-exon-scaffold_243-1491911889:936657..936824TCONS_00054585-exon-scaffold_243-1491911889:936657..936824Clytia hemisphaericaexon
TCONS_00054585-exon-scaffold_243-1510915933:936657..936824TCONS_00054585-exon-scaffold_243-1510915933:936657..936824Clytia hemisphaericaexon
TCONS_00054585-exon-scaffold_243-1575043694:936657..936824TCONS_00054585-exon-scaffold_243-1575043694:936657..936824Clytia hemisphaericaexon
TCONS_00054585-exon-scaffold_243-1491911889:937811..938002TCONS_00054585-exon-scaffold_243-1491911889:937811..938002Clytia hemisphaericaexon
TCONS_00054585-exon-scaffold_243-1510915933:937811..938002TCONS_00054585-exon-scaffold_243-1510915933:937811..938002Clytia hemisphaericaexon
TCONS_00054585-exon-scaffold_243-1575043694:937811..938002TCONS_00054585-exon-scaffold_243-1575043694:937811..938002Clytia hemisphaericaexon
TCONS_00054585-exon-scaffold_243-1491911889:938114..938435TCONS_00054585-exon-scaffold_243-1491911889:938114..938435Clytia hemisphaericaexon
TCONS_00054585-exon-scaffold_243-1510915933:938114..938435TCONS_00054585-exon-scaffold_243-1510915933:938114..938435Clytia hemisphaericaexon
TCONS_00054585-exon-scaffold_243-1575043694:938114..938435TCONS_00054585-exon-scaffold_243-1575043694:938114..938435Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:935024..938435 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.96714	1.49663	0.266073	1.14504	0.28578	0.317776	1.8329	1.6272	2.12399	1.85347	1.19611	0.539591	0.768692	1.14743	2.5377	5.28548	2.2663	2.90173	0.289862	1.40182	2.44351	2.36297	3.19428	2.73059	0.97203	0.861041	2.58292	3.03943	6.85519	5.74755
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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