TCONS_00054545 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00054545
Unique Name	TCONS_00054545
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	626

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_243:576862..580501+

transcript sequence

>TCONS_00054545 ID=TCONS_00054545|Name=TCONS_00054545|organism=Clytia hemisphaerica|type=transcript|length=626bp
NAGACATCAACTCACCCTCATTAGATAAACTTGTTGCGATGATCGAAGAA
AAACACGCTACTGGTCAGTATGACACAACAGTACATCTCAAATCACAGAT
TCAACATCTGTCTGGAAGGAATGAAGAATTGAGGCTTGAGTTACGTAGTG
CACAGCtcgaaataaacaaaacaatatcGGAACTAGATGCCAGAGctcag
aatattgaaaatttggaaaaggaAAATGGTGCTTTACGTGAGATAAGTCA
AGGTATCATCAAATTGAATCCATTGCCCTTACCCGAAGGCATCAAACCAA
CTTCTAAAGATATAATTGCGTGCTTGAACGAGTACATCATTCAAATCTTA
CAGGAAATATCAAACAAAGAGACGTTATGCTCAGAAATGGAATCAGCTTT
GGAAGACATGCGCCGTAAATATTCCGTCGCATTGCATCAACAGAGTATTG
TGTACAAAGAGCACTTAGCGGTGAAAgtggaaaaagaagaagaatcgaAG
AAATACGCAGACGAAAAAGAAGAGTTGCTACTGAAGAAAAGTCAAACTGA
CGTTCGCTTGCAAGAAttcgacCGCTTACTAGACAACCTCAGTACTGAGC
CTGGCCAACACAAAAAAATGCTGACG

Run BLAST on NCBI

transcript from alignment at scaffold_243:576862..580501+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00054545 ID=TCONS_00054545|Name=TCONS_00054545|organism=Clytia hemisphaerica|type=transcript|length=3640bp|location=Sequence derived from alignment at scaffold_243:576862..580501+ (Clytia hemisphaerica)
NAGACATCAACTCACCCTCATTAGATAAACTTGTTGCGGTAATGGATATT
ATATTATTGCTATTTAATAATTACTTTATTTGACCATTGCTGTTCACATT
CTGATTCTGATGATACTAAAAATCATTTcagtttctaaattttttgttaC
AGATGATCGAAGAAAAACACGCTACTGGTCAGTATGACACAACAGTACAT
CTCAAATCACAGGTATCATCAATGAAAATAGCAAATTTAAAACTATTGTT
AGCTACACTGTCTTTTCGAGGTAGGGTACGGTATATATTGGGTCATACCG
TATTGCTGTCGAGGCTTGCCGAGTTGTTTATCTACTTGGTTTGTGTTTTC
AAATCTAGTTTTTATTAACTGTGAATAATTTAAGGTTTTTAGACTGCACG
TgttattttggattttttctcaatctttcaaatatttttattcagATTCA
ACATCTGTCTGGAAGGAATGAAGAATTGAGGCTTGAGTTACGTAGTGCAC
AGCtcgaaataaacaaaacaatatcGGAACTAGATGCCAGAGctcagaat
gtaggtttgggtGTTTAATATTAAATCTCTATGTAAGATCTTAATGACCT
TTTGCAATTCTGTAAAACAGAGGTTTAATGAGGATTAATTCTACCAGGGT
CGAATGGTGTTCAATACTGAAGCTATTGAATTGGTGGTGATCAAAATATG
TCGACTTTTCCCAAAGCAGATTCGAGCCTATGGCTCTTGTATAATCTGCG
GGGCTTGTATACGTGTATTGCTTTATAATAAATGATGGTCCTTTTTGTAA
AAGGCTTTTAAAAAGCATTGTAGTAAGTCGTGGAATGAAACGTAGGCCAT
TACCACGATCTGATTGTGACCATGTTAATcaccaagattttttttttcat
tttcagattgaaaatttggaaaaggaAAATGGTGCTTTACGTGAGATAAG
TACGGGAAATAATTCACCATTCATTAGTTGCTACTACAAAATTATCTTCA
TTAGATTTTCTTCATTAAAATAGACCCTTTCTTAAAGCTCATCCTATAGT
TGACTCGCTCCAATTACTGAAAGATTCGACTCACATAGCTGTTCAAATTA
GAGAGTTGATTGTACGTTCAAAGTCATCATGACCCCCCAATATTTTACAA
AGTAATGTTTTTTACTTTAAAGAATCTTATATATAtatagaggggtgaaa
taagggtgaaaagttgaaacttttcttcgttttttcggccccctcaattc
gattaGCATGCCTGGGGCCATGGTCATCAACATACACACGTTCTTTAATG
CCAATATATCTCTAATACATTTTGACCTACTCCCCTCAATGCCAGTCTCT
TTTTTTGAGTCCACGTTGTTTTNTATCTCTAATACATTTTGACCTAGTCC
CCTCAATGCCAGTCTCTTTTTTGAGTCCACGTTGTTTCCAGTCGTCTTCA
TCTTTATCATATAACTTAATCTTTTAATTGTAATAGTTTCTCCCTTCTCT
CTATTAGGTCAAGGTATCATCAAATTGAATCCATTGCCCTTACCCGAAGG
CATCAAACCAACTTCTAAAGATATAATTGCGTGCTTGAACGAGTACATCA
TTCAAATCTTACAGGTACTTTTTGATAAACGTCAATTGTATAACGAATTC
TTTTTTATCCATGCGTTTTGATCACGAAATTCTCGTCAGAGAGTGGTTAA
TAAAATTGGGGAAGTCGTTGCAGTGGAACTAGATGTGACGCCACCCTGTT
AAACCATTACAGATTGTCTATCGGTATTGATCACTTGACAAAAATATAAC
GAAACCCAACCTATTTGCTAGCGTTTCCCTAACTGGATAGATATTCAATT
GACCTTGCTTTCTGTGACGTTCCTTTACAGGGTCACTATTCATAGGCGTC
AATACTATTAGAGATAAAgtctatgaaaaattgaaccGCCCGATGGTTAC
ATTGTGATACTATTTCAAAATTAGTGCGACGAGACCGATGTATTAAGTAA
TAAATAGAataacaatgattttataaagcataaatacactcttctcgaga
tgcataaatttattgttgtcctcgttttcaaacagatttccatgctataa
aattatacatttaaaccaatttaaatccccaaaaggcaaacattattcta
aaacaaaagtacttgaaattcaaaatgtctcatgaggtgtaaacaaccca
attatcattgtgaatatgtaattttatagcaatgaaatctgtttgaaaac
gaggacaacaatagaTTTATGCATCTCGATAAGAGTGTATTGTATCGAAA
TCGAGAAAAAGGGAcgagaaaatttcattttcaaccaAAACCGTGGAATA
CACCttgtaaataaagtttttttgcgtttttacaACTTGAAATTAACAGT
TGTCAGCCAAAAAGGGAAGAAATACTTgcgtgctcgcttcgctcgcgtca
ttttttacaaacgtattttacttttaaaaggGGCGCAAAACATCCCAGCA
TTCGAAAATTGCATCCCCAGCTTTGTTTGACTCACCACCACGCTACTGCG
TGAGTCATATGTTTGTGATTTGATTAAACTTCAGAATCCTTCCCAATTTG
TGATTCACGACTATTATGTAGTACAAATTCGTCAataattttaattcatt
tttttacaAGGAAATATCAAACAAAGAGACGTTATGCTCAGAAATGGAAT
CAGCTTTGGAAGACATGCGCCGTAAATATTCCGTCGCATTGCATCAACAG
GTTTGATATCCAATTTTAAGCcatgcatttttttaaatggctaCTACAGT
GGCCAGGTTTACTGTGGCATATACCGTCCTTGATTTGGCAGGTCAGAGCT
GTGATTTAttccaaatcgtttcagtcactccgccgtcctcaaaagtgcaa
atacaaaCTCGCTGTTATTTCAAGACAGTACGTTTTAGGACACCTCTGAC
CTGTAAAATCAAGGAccgtaaaagtgctgattttccTTCGTCTCGATTTG
GTCAAGATCTAAACAGATTAGAAGCtttccgtctccgtcgcagaaaaaca
ctcatacataaacttgctaatGCATAAAGGAGACGAAAGCACTAAACATA
ACGACTTTTTGAATGACTCATCTATTCAGAGTATTGTGTACAAAGAGCAC
TTAGCGGTGAAAgtggaaaaagaagaagaatcgaAGAAATACGCAGACGA
AAAAGAAGAGTTGCTACTGAAGAAAAGTCAAACTGACGTTCGCTTGCAAG
AAttcgacgtgagttgaacatgCATGGTTTTATAATTATTTAGCTTTAAA
ATTCAGTTAACATTACGTTCATTATCTTATCGGAGACAACCGAAAAAGCA
GGAATAATTCTCATTTTTTGCAATTTATAGTAACAAACGGGGCATAATTC
GGGGTTTTATTTTCAGGTGTTTCCCATAGTAAAAGTGATGTAATCTCACT
TAAGCATATATCAAGAATTACCGTTGCCTCCATTTaggctatgaaaaaaa
aatagcttTGAAAAAGATGCGTTCAGTGAGCGAAAAAAGATTCTGTATTA
ATTCGATTTATATCTCCTTTTCCTTTATTTTCATAGCGCTTACTAGACAA
CCTCAGTACTGAGCCTGGCCAACACAAAAAAATGCTGACG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034388	XLOC_034388	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_243	supercontig	scaffold_243:576862..580501 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.63187e-06	0.641957	0	0	0	0	0.39582	0.766364	0	1.22951	0.498447	0	0.415259	1.30029	1.04718	1.14914	0.865047	1.95214	0.759625	0.823571	0	0	1.18443	0.806066	0	0	0.398335	0.354969	1.80381	0.730975

Blast

[Close]

BLAST of TCONS_00054545 vs. Swiss-Prot (Human)
Match: CE290 (Centrosomal protein of 290 kDa OS=Homo sapiens GN=CEP290 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 2.260e-37
Identity = 83/204 (40.69%), Postives = 127/204 (62.25%), Query Frame = 3

Query:   15 PSLDKLVAMIEEKHATGQYDTTVHLKSQIQHLSGRNEELRLELRSAQLEINKTISELDARAQNIENLEKENGALREISQGIIKLNPLPLPEGIKPTSKDIIACLNEYIIQILQEISNKETLCSEMESALEDMRRKYSVALHQQSIVYKEHLAXXXXXXXXXXXYADEKEELLLKKSQTDVRLQEFDRLLDNLSTEPGQHKKMLT 626
            PSL++LV  IE K+A G +D ++HLK+Q+  L+GRNEELR ELR ++ E      +L      I++LEKE   LR+     +    + LP+GI P+S  II   NEY+I +LQE+ NKE     +E +LED  RK++V  HQQS++YKE+L+ K   + ESK   +EK +L  +  Q  ++++E++ LL+ L  +  + KK+L 
Sbjct:  677 PSLERLVNAIESKNAEGIFDASLHLKAQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKETSLLRQSEGSNVVFKGIDLPDGIAPSSASIINSQNEYLIHLLQELENKEKKLKNLEDSLEDYNRKFAVIRHQQSLLYKEYLSEKETWKTESKTIKEEKRKLEDQVQQDAIKVKEYNNLLNALQMDSDEMKKILA 880

The following BLAST results are available for this feature:

BLAST of TCONS_00054545 vs. Swiss-Prot (Human)

BLAST of TCONS_00054545 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CE290	2.260e-37	40.69	Centrosomal protein of 290 kDa OS=Homo sapiens GN=...	[more]

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TCONS_00054545 (transcript) - C. hemisphaerica