TCONS_00054541 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054541
Unique NameTCONS_00054541
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1683

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054541 ID=TCONS_00054541|Name=TCONS_00054541|organism=Clytia hemisphaerica|type=transcript|length=1683bp
cggactgatttttttctcctcgcattgctatctaacttttatcatcaggt
aggtccattcagcatctagcttgttttctttcaaactgatattttcttca
aaattttagtcCCTGAATTGGCTTTTCAATTGCTGTCAAGTGCTCGTAAC
AGCTGTGGCTTGTTTACTGTGGTCAAGTTGTGGATCAAGTAATTATTTAG
CAAACATTGAAGATTATGTTCCTGGTTTAAGGGGCAATAGATGGTGGAAA
GCTTACCAAGAGGCCCAGCAATTCCGATTCAGTCATTATTTTTCATGTTA
CCTATCAGAAGCGAGCATTCTTCTTGTTGGTATCGGTACACTGACGCCTA
ATGTTAAAAGTTCgaaagaaaataagaagaaaaaagaacaaaccATTCAA
TGGAGGTCGCCAGTTACCAGTTTAATGATGGTAGAGTTTCCAAGATCTTT
AGTGGATGTGGTTACGAATTGGAATCTACCGGTGCACTATTGGCTAAAGC
AATACATATTCAAATCCACCAGAAAGTACGGGGTGTTTGCTGCAATCTTA
ATCACTTACGTTGCAAGCTCCATGTTACACgctttcaacTTTCAATTATC
AGCTGTTCTTCTCTCCATTGGCATTTTCGCATACGTTGAAGCAAGTTTTA
GACATTTGTTGGCAGTGTGGTTCAACGCTTGTATCGAAGCAAGAAAGTGT
CGCGGGAAATGTACGCACAAGTATAACAAGAATAATTTTTTCGTAATGGC
AGTCAATTTGATGTTTTCTATGGTTGCTGTATGGAATCTAGCATATCTTG
GATGTCTCTTTGATGCCTCCGAGGAAGAAGATAAGGGGTATTCGATGAAG
CACGCTTTAAAGAAATGGCAGGGTTATAACTACACAAACCATTTGGTAAT
GCTTGTAGTACTTGTCTTTCAAAAGCTATCTGGTTTATTCGTAAGGACTG
ACTAGCTGTACATGTTTTTCAAAAgccttttttaaattatttaattacta
acaattttctttttttttatatctaTTTTGATATATTTAGAAAGGATATT
GCTGGTAAATTGAAAAAGTTCTATAAGCCAGAAAACGGCACAGTTTTGAC
GTTCAGTACAAATAGAttgtcttttttcaaatttctttataaTACATCCT
AACGattcgacccccccccccccNNNCCAAcgctcccccccccccccccc
atccaAACTTTGTTAGTTGCTTTATTAAGCCCTTAGAGGCTTATTCCCAC
TTTCAGTAACTTAATTGGACTGAGTTTTCCTGTCCTCCACCAGGGTGGCA
AAAAATGATacatttgtttattattttaaattatttttgggcTACATAAT
CCATTGTTTTTATTAAGTCTCTGTAATGATTTTACAAGGTatttgaattt
tagattttaatttttaagctTTTAAACTTTAAGTTTAAGTTTACTTTTAA
GCTAGTATATACTATACAGCCGTTTCCTTATAAGATCACTAAGTAAGCTC
AGCTAACAATAAGACCCATAAACAAGTTAAGAACCATTTTAGCTTTAGAT
AGGCACGTGTAATGCTCCTTTTAGGCCCCGATATGTCAATAAAGTAAACA
CTTTAAGAAGACCATTTATTTAAGTCTTGAAAGATTAAGAACTTGTTCAA
AAAGCAGATAGAATAATATCAGTTACACGGTCC
Run BLAST on NCBI

protein sequence of TCONS_00054541-protein

>TCONS_00054541-protein ID=TCONS_00054541-protein|Name=TCONS_00054541-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MMVEFPRSLVDVVTNWNLPVHYWLKQYIFKSTRKYGVFAAILITYVASSM
LHAFNFQLSAVLLSIGIFAYVEASFRHLLAVWFNACIEARKCRGKCTHKY
NKNNFFVMAVNLMFSMVAVWNLAYLGCLFDASEEEDKGYSMKHALKKWQG
YNYTNHLVMLVVLVFQKLSGLFVRTD
Run BLAST on NCBI

transcript from alignment at scaffold_243:539014..546009+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054541 ID=TCONS_00054541|Name=TCONS_00054541|organism=Clytia hemisphaerica|type=transcript|length=6996bp|location=Sequence derived from alignment at scaffold_243:539014..546009+ (Clytia hemisphaerica)
cggactgatttttttctcctcgcattgctatctaacttttatcatcaggt
aggtccattcagcatctagcttgttttctttcaaactgatattttcttca
aaattttagtcCCTGAATTGGCTTTTCAATTGCTGTCAAGTGCTCGTAAC
AGCTGTGGCTTGTTTACTGTGGTCAAGTTGTGGATCAAGTAATTATTTAG
CAAACATTGAAGATTATGTTCCTGGTTTAAGGGGCAATAGGTAATACTTG
TGCATTCAATAAAGACTCTAATTTtctgaatatattttttcatcaagatt
ttttttgaatttacgATATTGTTTTTGTCCTTCAGTCCTTCAATCTCTTT
CACTCATCCATGTCATCTGCCGAACCATCCTCTTAGCTGTCTTGAATTCG
TAAATTAATGTTGATACCAAGAGATCATTCGCCATGGCATTTTAGGTCCT
CCAAAGGGGTCAATCaataatttgacaaatttttgcGAGATTTAATTTTT
CGATATCGCGAATTTTTGTGTGTGATCGCTGCTGACTTGCggaattaaat
ccacgcgaaatttttgatattgtatttttatcGTAAAATAGTctggaaat
tttatattttaggtGTATTCAGGGCCATTTTCAACTAATTTTTAACTGAT
TTGCGTTGTTAAATCCCAATTGATTCTTGAAAATTTATCCGATTAAAGTA
ATAGATAATTTCAGCTCGTGAATATTAGCGAATTTTGAGTGGTTTCTACA
TGGTAGCAACAAAAGAGAGCTAACTAAAGCGAACGGACTTATAATTTACT
TATTCTATTTCATAGATGGTGGAAAGCTTACCAAGAGGCCCAGCAATTCC
GATTCAGTCATTATTTTTCATGTTACCTATCAGAAGCGAGCATTCTTCTT
GTTGGTATCGGTACACTGACGCCTAATGTTAAAAGTTCgaaagaaaataa
gaagaaaaaagaacaaaccATTCAATGGTAAGGAAAATTGTGTCCATTCC
CCCATGACATGCAACACTGCATTCTCTCTCAAAATTTGACTAAGAATACA
TCATTTGACCAACTCATGAAATCGACCGCTGAAATGTCTTCATAAAATAA
TGTAGCTTTTCTATCGTTTTTTTTCTACTCAATACAAAACATCAATTGTA
ACCACTCACTTCTTAAAAAATGCTTTAATGTCAGAAGAAATTGCAAGGGT
GCAtggaaattctgtaaaaagagaaaatttttccaggggATTCAGAGTTT
TTCCCAATAAAATGATCACAAGTTAGACATTCAATTATTCAGAGATTATT
ACTAAGCTCTGGTCCATTTTTTGTCAATGGACAGAATGTTACCTTCTTTC
AATGCATTgacttttttcaatctttttcgaGCATAGATTTCGACTGCCAA
ATTTCTGTCCATTTTTTGCCTACCCTAGAATAGGTTGGGCAGTTATTCGA
GTCTAAACTAAAGATAATTGTTCCTCTATAAACGTAATTGTATCATTTGT
TCTTTCACAGGAGGTCGCCAGTTACCAGTTTAATGATGGTAGAGTTTCCA
AGATCTTTAGTGGATGTGGTTACGAATTGGAATCTACCGGTGCACTATTG
GCTAAAGCAATGTATGTAAATATTGTATACCTTACATTCTataatttcaa
ggctttttgaAGAAGAAACGGCTTCAGACATTTGCTTTTATGTTATGAAA
GTCGATTTGTCATCTCTATCCATGAGTTTCACAAgcaaatttgaaacaaa
attctATAACTTTGTTCCCTTTaaactgaaaaaaacaaccCTGTATCAAT
ATTTTAGCCGGTTGAGATAAAATTAGTATATGTGATGTGAtatgatatca
tgtgattacgaATTAATTGTACATTTTCGTTCatagtttttctttcttat
aaaaggaatttcgaatgaaattaaaactttcgataaaaaaacgaaagaaa
aacattaaacTCTATCTTGTAAACATTTGCCTCTTTGAAGGTTTaccaaa
tgagaaaaaataaccaatcatgCGATTAAAGagcaaatggggatgaaata
ataataatttataaTTGGATGGGGccttttatattttattgttttactGT
ACtgctcaaaaatatatttagaaCTTTCAAAGCTTAAGTACCTTTTCCCA
AGTGGAGATGAAACTAAATCAGGATAATATGtaatactagccggtacccg
gcgttgcacgccggttaagctgtataGCTGACGCAATAAAAGTCCtctgg
atgttgaagctggcttaaaaaacgatcaaatgaaaaaaaatctcttcaaa
gtttgactctagccttcccccggagatctttttctcgcttcgctcgcatt
aaatacgccATCCAGTTCtcgataatttgaaaaaattgtatgtcatagta
aagaggagtgaaatgtagaaatgacaattcttcaggTGAAAGTGGGgaag
ccacaaagaatagtgcaactctttgtttttatcagatttgaaaaaataaa
taagtcaattctaaattcctttttttaaacccttgtcataacttttcgaa
tttaaacatttaaaatgacgtacacagtttttaacagtatcgaacacttg
aatgtttttatatgaagaaagaggtgGACTAATtttttctcttgcttttt
atcgccctttgaatgctgttgttgttcgacaaacttttttaatttttatg
ttttgatttacatttgaaatgttcttttctataaaataaaatgaaacttg
ttttgttttgaaaagaattcgaatgtcattaataaatacgatcgttaaat
acatgcgaaaacatttcaaacaaaagaaaagagaaaaaacaaaGGGACGG
GCAACCCtagcagaaattaaaatttctaaatgtagatgggcctcaAATTT
Cagaacaaaggctgaataaaatctaaaccaggctctatccgatctatcaa
tcaaaacaaaaaacttatcgagaacaaaaacattgcttgcgaaaacgaaa
gtgacacacaggaAACAGACATTAATATATAGATGACATTATTTTTCCAC
TCGGTTGGTGGTTTCGACGCGTGTTTGAGACACAAATTGTTCTCAGTGTT
TGACTATTTTGTATTATTTAATTTTCCTATTTTGATTCCCAGACATATTC
AAATCCACCAGAAAGTACGGGGTGTTTGCTGCAATCTTAATCACTTACGT
TGCAAGCTCCATGTTACACGTAAGTAGTTTTCTTACGAAAATTAAATCAC
TCTTCGAGACTTCTTATGTAAGCAATATTTCCCAATCGAAATGAATCAGG
ACCACCGTGCTCTGGTAACGACTTTCGGAATTCACAATTCTTAAAGCTTG
AAGATATAGATAaatgaaaagtgatttttttaaagggCTGTAAGATTTTT
GGGCCGGCAGGTTTCAAGGTTAAAAGTTTTGAGACGTATAAATAAGAAAA
CAACCTATGGGGCCCTTATGATTAATTTTGACCTTGAAATTGACTATGGA
CCCACCTCCATAgtcaatttcaattttgctCGACTAGGGCATATGATTGA
CACTGCTTTTAGTTTCACGAGTGAAACAACTACACATAAATGTCACTTAT
AACAGAAATAAATGCGACCAATTCGCTTTCCAAGCTACGTGAATTACAAT
TGATGCACCCTTATTCGAATTTTCTTGCTTAGGATTCAgcgttttaaata
ttttatgcATATATTCAATTTTGTAATGAATCTGACTTTGAATTTATGTT
TACAATCACTGATCATTATATCAAGCGATACtgcttttttaggctttcaa
cTTTCAATTATCAGCTGTTCTTCTCTCCATTGGCATTTTCGCATACGTTG
AAGCAAGTAAGTTGTCCTTTTCTTCCACAAAAAATCGTTTGTCCATTCTT
AAACCATGCGATAGTATCCCATTTAATGCCAATTCAAGTCAATGTTTACC
ATTTTGAAGCCTGTTAATGGTCAAGTTTGCAGTATGTGACGTTATTTACG
ACCCTTTTTGGCGTAAGCTCGTAATTTGGTAGTGACAAATTAAGGGCTGA
CGTAAAAAGGGTCAGCGTTAACTTAGGgttggcgtaaaaagggccgaaaA
GGTATTACAAAATAGGCTCATTTAAAGCTTTTCGTAATGAAACTCCTGTA
ATATACCAACTTCAGTTTACCAtttaataaacattgaaactttttaaaca
tAGTTTCCTTTTTCTCTCCGCGATGTTTTATCGGGTAAATTTTTCTAAAG
AGTTTTCTGCAAACTAGCAACTTCGTATTTTAAATTGCTAAATATTGTCA
TTAGAAAAATTCAACTCTCATCGATAACTTCTCTAGGTTTTAGACATTTG
TTGGCAGTGTGGTTCAACGCTTGTATCGAAGCAAGAAAGTGTCGCGGGAA
ATGTACGCACAAGTATAACAAGGTTGATAATATTATTCAAGCATAAGTTG
TCACTATTTCGAAAACGAAATCTACTCAATTTGAAAGTACTACTTGACAg
gatttccaatttttaatgaGCCCGAAAAATTTAAGATCAAGTTGTTCCAA
TATTCTTAGAAGTATTCTGGTATCTTAAAGCGAAGGCTTCTCTGCTTTTC
TGAGGTTCCGATGGTGGATTGGTGGCCGCACACGCTAAATATCTATATGG
AACGGGCAGATCTTTCATCGAAAAGCATTGGTAGTCGCCTTCTGTTGTAT
CACTATCCGCAGCTCATACccataaagtgaaaaaaactgtACAGTGATAC
CCCCTAAACGAAGGCTGGGTAACCAAACCCCCTCCCTCGTTTTTGTTTCG
TGATCAGGCCAAATTGTGTAGTACAAACCTTCcaaaagttaaagattttt
ccgtCGAAAGATGATTTTTTTGCCCGTTTTATGAGTTTAAAGAATGATTT
AGTTAATCAAGAAGTTTTGGATAATTTAGATCAAAGAGACCTTCGATATC
ATAGATTATAGCCCTGCaatacaactgtcaatcatttttaagaaaactga
ttGGATGATTAATGTCACGTGGCCGGTCAATATTTCTCCATAGTGACCAG
TTATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNgggggggggggggcggcgTTTAGTGACATAGGTTAA
ATAAtgacgccccctcgaataaacactcctcctaaaattcaataaacgtc
aggggcgtttattcgaagcaATACGGTATTTCTTTCAAAGGGTATTATTT
GAAACGCATGTACATTAAGAGTAATTTTCTTTCAACCTTAGAATAATTTT
TTCGTAATGGCAGTCAATTTGATGTTTTCTATGGTTGCTGTATGGAATCT
AGCATATCTTGGATGTCTCTTTGATGCCTCCGAGGAAGAAGATAAGGTAA
ATCTTTTCCTTTGAGTGAAAAAGTCCGGGGCCTGTTTGCTGACAAAAATT
AGGGTCTTAAAATTCGACCAACTTAAGTCGAATTTGGGTAAATTGAAGCN
AAAAAGTCCGGGGCCTGTTTGCTGACAAAAATTAGGGTCTTAAAATTCGA
CCAACTTAAGTCGAATTTGAGCAAATTGAAGCAAAAAATCTACCTTCGAA
ATgcatttttgaccattttgaccATATAAGGCCAAAAATTCATAATCTCT
ATTGACCCTGACAGTGTATTTTGTTAATTTCTACTACCGCTGGTTAATAG
TTACTTTCATTGTAGTAATTGGTCGACGTTCTTTTCCTTTCATTTCAGGG
GTATTCGATGAAGCACGCTTTAAAGAAATGGCAGGGTTATAACTACACAA
ACCATTTGGTAATGCTTGTAGTACTTGTCTTTCAAAAGCTATCTGGTTTA
TTCGTAAGGACTGACTAGCTGTACATGTTTTTCAAAAgccttttttaaat
tatttaattactaacaattttctttttttttatatctaTTTTGATATATT
TAGAAAGGATATTGCTGGTAAATTGAAAAAGTTCTATAAGCCAGAAAACG
GCACAGTTTTGACGTTCAGTACAAATAGAttgtcttttttcaaatttctt
tataaTACATCCTAACGattcgacccccccccccccNNNCCAAcgctccc
cccccccccccccatccaAACTTTGTTAGTTGCTTTATTAAGCCCTTAGA
GGCTTATTCCCACTTTCAGTAACTTAATTGGACTGAGTTTTCCTGTCCTC
CACCAGGGTGGCAAAAAATGATacatttgtttattattttaaattatttt
tgggcTACATAATCCATTGTTTTTATTAAGTCTCTGTAATGATTTTACAA
GGTatttgaattttagattttaatttttaagctTTTAAACTTTAAGTTTA
AGTTTACTTTTAAGCTAGTATATACTATACAGCCGTTTCCTTATAAGATC
ACTAAGTAAGCTCAGCTAACAATAAGACCCATAAACAAGTTAAGAACCAT
TTTAGCTTTAGATAGGCACGTGTAATGCTCCTTTTAGGCCCCGATATGTC
AATAAAGTAAACACTTTAAGAAGACCATTTATTTAAGTCTTGAAAGATTA
AGAACTTGTTCAAAAAGCAGATAGAATAATATCAGTTACACGGTCC

Coding sequence (CDS) from alignment at scaffold_243:539014..546009+

>TCONS_00054541 ID=TCONS_00054541|Name=TCONS_00054541|organism=Clytia hemisphaerica|type=CDS|length=3186bp|location=Sequence derived from alignment at scaffold_243:539014..546009+ (Clytia hemisphaerica)
ATGATGGTAGAGTTTCCAAGATCTTTAGTGGATGTGGTTACGAATTGGAA
TCTACCGGTGCACTATTGGCTAAAGCAATACATATTCAAATCCACCAGAA
AGTACGGGGTGTTTGCTGCAATCTTAATCACTTACGTTGCAAGCTCCATG
TTACACgctttcaacTTTCAATTATCAGCTGTTCTTCTCTCCATTGGCAT
TTTCGCATACGTTGAAGCAAGTTTTAGACATTTGTTGGCAGTGTGGTTCA
ACGCTTGTATCGAAGCAAGAAAGTGTCGCGGGAAATGTACGCACAAGTAT
AACAAGAATAATTTTTTCGTAATGGCAGTCAATTTGATGTTTTCTATGGT
TGCTGTATGGAATCTAGCATATCTTGGATGTCTCTTTGATGCCTCCGAGG
AAGAAGATAAGGGGTATTCGATGAAGCACGCTTTAAAGAAATGGCAGGGT
TATAACTACACAAACCATTTGGTAATGCTTGTAGTACTTGTCTTTCAAAA
GCTATCTGGTTTATTCGTAAGGACTGACTAGATGATGGTAGAGTTTCCAA
GATCTTTAGTGGATGTGGTTACGAATTGGAATCTACCGGTGCACTATTGG
CTAAAGCAATACATATTCAAATCCACCAGAAAGTACGGGGTGTTTGCTGC
AATCTTAATCACTTACGTTGCAAGCTCCATGTTACACgctttcaacTTTC
AATTATCAGCTGTTCTTCTCTCCATTGGCATTTTCGCATACGTTGAAGCA
AGTTTTAGACATTTGTTGGCAGTGTGGTTCAACGCTTGTATCGAAGCAAG
AAAGTGTCGCGGGAAATGTACGCACAAGTATAACAAGAATAATTTTTTCG
TAATGGCAGTCAATTTGATGTTTTCTATGGTTGCTGTATGGAATCTAGCA
TATCTTGGATGTCTCTTTGATGCCTCCGAGGAAGAAGATAAGGGGTATTC
GATGAAGCACGCTTTAAAGAAATGGCAGGGTTATAACTACACAAACCATT
TGGTAATGCTTGTAGTACTTGTCTTTCAAAAGCTATCTGGTTTATTCGTA
AGGACTGACTAGATGATGGTAGAGTTTCCAAGATCTTTAGTGGATGTGGT
TACGAATTGGAATCTACCGGTGCACTATTGGCTAAAGCAATACATATTCA
AATCCACCAGAAAGTACGGGGTGTTTGCTGCAATCTTAATCACTTACGTT
GCAAGCTCCATGTTACACgctttcaacTTTCAATTATCAGCTGTTCTTCT
CTCCATTGGCATTTTCGCATACGTTGAAGCAAGTTTTAGACATTTGTTGG
CAGTGTGGTTCAACGCTTGTATCGAAGCAAGAAAGTGTCGCGGGAAATGT
ACGCACAAGTATAACAAGAATAATTTTTTCGTAATGGCAGTCAATTTGAT
GTTTTCTATGGTTGCTGTATGGAATCTAGCATATCTTGGATGTCTCTTTG
ATGCCTCCGAGGAAGAAGATAAGGGGTATTCGATGAAGCACGCTTTAAAG
AAATGGCAGGGTTATAACTACACAAACCATTTGGTAATGCTTGTAGTACT
TGTCTTTCAAAAGCTATCTGGTTTATTCGTAAGGACTGACTAGATGATGG
TAGAGTTTCCAAGATCTTTAGTGGATGTGGTTACGAATTGGAATCTACCG
GTGCACTATTGGCTAAAGCAATACATATTCAAATCCACCAGAAAGTACGG
GGTGTTTGCTGCAATCTTAATCACTTACGTTGCAAGCTCCATGTTACACg
ctttcaacTTTCAATTATCAGCTGTTCTTCTCTCCATTGGCATTTTCGCA
TACGTTGAAGCAAGTTTTAGACATTTGTTGGCAGTGTGGTTCAACGCTTG
TATCGAAGCAAGAAAGTGTCGCGGGAAATGTACGCACAAGTATAACAAGA
ATAATTTTTTCGTAATGGCAGTCAATTTGATGTTTTCTATGGTTGCTGTA
TGGAATCTAGCATATCTTGGATGTCTCTTTGATGCCTCCGAGGAAGAAGA
TAAGGGGTATTCGATGAAGCACGCTTTAAAGAAATGGCAGGGTTATAACT
ACACAAACCATTTGGTAATGCTTGTAGTACTTGTCTTTCAAAAGCTATCT
GGTTTATTCGTAAGGACTGACTAGATGATGGTAGAGTTTCCAAGATCTTT
AGTGGATGTGGTTACGAATTGGAATCTACCGGTGCACTATTGGCTAAAGC
AATACATATTCAAATCCACCAGAAAGTACGGGGTGTTTGCTGCAATCTTA
ATCACTTACGTTGCAAGCTCCATGTTACACgctttcaacTTTCAATTATC
AGCTGTTCTTCTCTCCATTGGCATTTTCGCATACGTTGAAGCAAGTTTTA
GACATTTGTTGGCAGTGTGGTTCAACGCTTGTATCGAAGCAAGAAAGTGT
CGCGGGAAATGTACGCACAAGTATAACAAGAATAATTTTTTCGTAATGGC
AGTCAATTTGATGTTTTCTATGGTTGCTGTATGGAATCTAGCATATCTTG
GATGTCTCTTTGATGCCTCCGAGGAAGAAGATAAGGGGTATTCGATGAAG
CACGCTTTAAAGAAATGGCAGGGTTATAACTACACAAACCATTTGGTAAT
GCTTGTAGTACTTGTCTTTCAAAAGCTATCTGGTTTATTCGTAAGGACTG
ACTAGATGATGGTAGAGTTTCCAAGATCTTTAGTGGATGTGGTTACGAAT
TGGAATCTACCGGTGCACTATTGGCTAAAGCAATACATATTCAAATCCAC
CAGAAAGTACGGGGTGTTTGCTGCAATCTTAATCACTTACGTTGCAAGCT
CCATGTTACACgctttcaacTTTCAATTATCAGCTGTTCTTCTCTCCATT
GGCATTTTCGCATACGTTGAAGCAAGTTTTAGACATTTGTTGGCAGTGTG
GTTCAACGCTTGTATCGAAGCAAGAAAGTGTCGCGGGAAATGTACGCACA
AGTATAACAAGAATAATTTTTTCGTAATGGCAGTCAATTTGATGTTTTCT
ATGGTTGCTGTATGGAATCTAGCATATCTTGGATGTCTCTTTGATGCCTC
CGAGGAAGAAGATAAGGGGTATTCGATGAAGCACGCTTTAAAGAAATGGC
AGGGTTATAACTACACAAACCATTTGGTAATGCTTGTAGTACTTGTCTTT
CAAAAGCTATCTGGTTTATTCGTAAGGACTGACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034387XLOC_034387Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054541-proteinTCONS_00054541-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054541-exon-scaffold_243-1491911889:539014..539253TCONS_00054541-exon-scaffold_243-1491911889:539014..539253Clytia hemisphaericaexon
TCONS_00054541-exon-scaffold_243-1510915933:539014..539253TCONS_00054541-exon-scaffold_243-1510915933:539014..539253Clytia hemisphaericaexon
TCONS_00054541-exon-scaffold_243-1575043694:539014..539253TCONS_00054541-exon-scaffold_243-1575043694:539014..539253Clytia hemisphaericaexon
TCONS_00054541-exon-scaffold_243-1491911889:539829..539990TCONS_00054541-exon-scaffold_243-1491911889:539829..539990Clytia hemisphaericaexon
TCONS_00054541-exon-scaffold_243-1510915933:539829..539990TCONS_00054541-exon-scaffold_243-1510915933:539829..539990Clytia hemisphaericaexon
TCONS_00054541-exon-scaffold_243-1575043694:539829..539990TCONS_00054541-exon-scaffold_243-1575043694:539829..539990Clytia hemisphaericaexon
TCONS_00054541-exon-scaffold_243-1491911889:540524..540624TCONS_00054541-exon-scaffold_243-1491911889:540524..540624Clytia hemisphaericaexon
TCONS_00054541-exon-scaffold_243-1510915933:540524..540624TCONS_00054541-exon-scaffold_243-1510915933:540524..540624Clytia hemisphaericaexon
TCONS_00054541-exon-scaffold_243-1575043694:540524..540624TCONS_00054541-exon-scaffold_243-1575043694:540524..540624Clytia hemisphaericaexon
TCONS_00054541-exon-scaffold_243-1491911889:542156..542232TCONS_00054541-exon-scaffold_243-1491911889:542156..542232Clytia hemisphaericaexon
TCONS_00054541-exon-scaffold_243-1510915933:542156..542232TCONS_00054541-exon-scaffold_243-1510915933:542156..542232Clytia hemisphaericaexon
TCONS_00054541-exon-scaffold_243-1575043694:542156..542232TCONS_00054541-exon-scaffold_243-1575043694:542156..542232Clytia hemisphaericaexon
TCONS_00054541-exon-scaffold_243-1491911889:542806..542869TCONS_00054541-exon-scaffold_243-1491911889:542806..542869Clytia hemisphaericaexon
TCONS_00054541-exon-scaffold_243-1510915933:542806..542869TCONS_00054541-exon-scaffold_243-1510915933:542806..542869Clytia hemisphaericaexon
TCONS_00054541-exon-scaffold_243-1575043694:542806..542869TCONS_00054541-exon-scaffold_243-1575043694:542806..542869Clytia hemisphaericaexon
TCONS_00054541-exon-scaffold_243-1491911889:543350..543435TCONS_00054541-exon-scaffold_243-1491911889:543350..543435Clytia hemisphaericaexon
TCONS_00054541-exon-scaffold_243-1510915933:543350..543435TCONS_00054541-exon-scaffold_243-1510915933:543350..543435Clytia hemisphaericaexon
TCONS_00054541-exon-scaffold_243-1575043694:543350..543435TCONS_00054541-exon-scaffold_243-1575043694:543350..543435Clytia hemisphaericaexon
TCONS_00054541-exon-scaffold_243-1491911889:544705..544809TCONS_00054541-exon-scaffold_243-1491911889:544705..544809Clytia hemisphaericaexon
TCONS_00054541-exon-scaffold_243-1510915933:544705..544809TCONS_00054541-exon-scaffold_243-1510915933:544705..544809Clytia hemisphaericaexon
TCONS_00054541-exon-scaffold_243-1575043694:544705..544809TCONS_00054541-exon-scaffold_243-1575043694:544705..544809Clytia hemisphaericaexon
TCONS_00054541-exon-scaffold_243-1491911889:545162..546009TCONS_00054541-exon-scaffold_243-1491911889:545162..546009Clytia hemisphaericaexon
TCONS_00054541-exon-scaffold_243-1510915933:545162..546009TCONS_00054541-exon-scaffold_243-1510915933:545162..546009Clytia hemisphaericaexon
TCONS_00054541-exon-scaffold_243-1575043694:545162..546009TCONS_00054541-exon-scaffold_243-1575043694:545162..546009Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:539014..546009 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.7278	2.48036	1.98941	1.55621	22.2989	17.3644	13.8941	14.9195	12.4747	14.9604	11.6297	13.9586	6.98074	6.53625	5.05718	5.02016	5.15141	5.83915	3.83915	3.85543	3.74704	3.50879	3.44626	3.16131	6.30541	6.54996	5.05026	4.05054	4.70021	4.27553
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004299MBOAT_fam
Blast
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BLAST of TCONS_00054541 vs. Swiss-Prot (Human)
Match: PORCN (Protein-serine O-palmitoleoyltransferase porcupine OS=Homo sapiens GN=PORCN PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 3.550e-49
Identity = 94/240 (39.17%), Postives = 146/240 (60.83%), Query Frame = 2 
Query:  230 RGN--RWWKAYQEAQQFRFSHYFSCYLSEASILLVGIGTLTPNVXXXXXXXXXXXQTIQWRSPVTSLMMVEFPRSLVDVVTNWNLPVHYWLKQYIFKSTRKYGVFAAILITYVASSMLHAFNFQLSAVLLSIGIFAYVEASFRHLLAVWFNACIEARKCRGKCTHKYNKNNFFVMAVNLMFSMVAVWNLAYLGCLFDASEE---EDKGYSMKHALKKWQGYNYTNHLVMLVVLVFQKLSG 934
            RG   RW +AY+ A  F FS+YF  +LSEA+  L G G              +++  ++W   V+  + VE PRS+V+VVT+WNLP+ YWL  Y+FK+  + G F+A+L+TY AS++LH F+F L+AVLLS+    YVE   R  LA   +AC+ +++C   C+H++ +    V A+NL+F  +A+++LAYLG LFD   +   E++GY M + + KW   ++ +H V     +F +L G
Sbjct:  235 RGTMVRWLRAYESAVSFHFSNYFVGFLSEATATLAGAG------------FTEEKDHLEWDLTVSKPLNVELPRSMVEVVTSWNLPMSYWLNNYVFKNALRLGTFSAVLVTYAASALLHGFSFHLAAVLLSLAFITYVEHVLRKRLARILSACVLSKRCPPDCSHQH-RLGLGVRALNLLFGALAIFHLAYLGSLFDVDVDDTTEEQGYGMAYTVHKWSELSWASHWVTFGCWIFYRLIG 461
The following BLAST results are available for this feature:
BLAST of TCONS_00054541 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PORCN3.550e-4939.17Protein-serine O-palmitoleoyltransferase porcupine... [more]
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