|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054538 ID=TCONS_00054538|Name=TCONS_00054538|organism=Clytia hemisphaerica|type=transcript|length=1208bp
AGGTTATCCAGTTCTTATACCATAAAAACTAAAAGCTATACAAATTgcat
aaaaaattataaactttGGGTTTTGATTCCCTTGAATAaccaaaataaat
atttccccGGGAGGGgaggggcactcaaggtaagtAACGTACCGTAGGTG
CGGCTCTTAAGGGTGCATTTTATATCAGGTTTCCCCTGTAAGGatcaaaa
tgagcaaaaatgagagaaagtgggtgtaaaaagtgagcaaaacaaagttt
ttttgccgtCATTGTACATTTTTCGCTCAGATTTACTCTAAtgggccttt
tcataaattacgtcacgaatatcacttgcctcgtattcaaacaattacca
ttaCCATTATGTcacttgagaaaaaaaatgatttttttaatgaatggaaa
gtagttttaataaaatctgctgggagttaatcatcacggcaataatttca
aaacgaggcaagtgatgttcgtgaggtaatttatgaaaaggtctattcgc
cTTAACTTTTCTGCAAGGGTCCGCTTTCGAAGGCTTAATTTTGGGCGACG
CTTTCGAACATACGATAATGAGTACTATATGTATCTCGCGACTTTATACC
CATTTCTCCATCGTGAAGGCCTTTTAAGGGTGGTTAAATTTCAGTGGTCA
ATGCAAGGTGTTTCGCTTTAGACACAAAATAGCAAATCAgcacaaaatct
tgaaattttggtgaattgtTCAGAGATTTAAGACGGAAAAGACTCTACTT
CGCTGAGAGGAAATCCATCAAGGgcggaagaacttttaacactgcGATTT
ATAGGGTGGCTCAATATAATAATATCAAGTAATATTCCGATGATATATCC
AGTATACCAATATTGATATACGTCACCAAATTAAGGATACCTCGCGCATC
CAATCAATAAATGAGCATTATCATAGCTCTTTAACCTCTCTCGCCAAAAC
TATTTCTCAGCCTGGATGGTTTCCGTTTCAAGTTATATCTGGGTTTCAAC
ATCATCGAACCTTTTGATACACACGTATCGTAGTCGTATGAAAAGTATGG
ATGCTTTCCTCGTGGATCCTGTGTGAAGTATGATTGAGATAGTTGAATAT
TCCCTTTCAACAGGACGTTGACTTGATCGAGAACATCGACAGGTTCAGGG
GTGATAATGTACAATCTTGTCGTCAGTGCGTCTATCTTCTCGATATTTCG
AATTATTG Run BLAST on NCBI transcript from alignment at scaffold_243:468097..470048+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054538 ID=TCONS_00054538|Name=TCONS_00054538|organism=Clytia hemisphaerica|type=transcript|length=1952bp|location=Sequence derived from alignment at scaffold_243:468097..470048+ (Clytia hemisphaerica)
AGGTTATCCAGTTCTTATACCATAAAAACTAAAAGCTATACAAATTgcat
aaaaaattataaactttGGGTTTTGATTCCCTTGAATAaccaaaataaat
atttccccGGGAGGGgaggggcactcaaggtaagtAACGTACCGTAGGTG
CGGCTCTTAAGGGTGCATTTTATATCAGGTTTCCCCTGTAAGGatcaaaa
tgagcaaaaatgagagaaagtgggtgtaaaaagtgagcaaaacaaagttt
ttttgccgtCATTGTACATTTTTCGCTCAGATTTACTCTAAtgggccttt
tcataaattacgtcacgaatatcacttgcctcgtattcaaacaattacca
ttaCCATTATGTcacttgagaaaaaaaatgatttttttaatgaatggaaa
gtagttttaataaaatctgctgggagttaatcatcacggcaataatttca
aaacgaggcaagtgatgttcgtgaggtaatttatgaaaaggtctattcgc
cTTAACTTTTCTGCAAGGGTCCGCTTTCGAAGGCTTAATTTTGGGCGACG
CTTTCGAACATACGATAATGAGTACTATATGTATCTCGCGACTTTATACC
CATTTCTCCATCGTGAAGGCCTTTTAAGGGTGGTTAAATTTCAGTGGTCA
ATGCAAGGTGTTTCGCTTTAGACACAAAATAGCAAATCAgcacaaaatct
tgaaattttggtgaattgtTCAGAGATTTAAGACGGAAAAGACTCTACTT
CGCTGAGAGGAAATCCATCAAGGgcggaagaacttttaacactgcGATTT
ATAGGGTGGCTCAATATAATAATATCAAGTAATATTCCGATGATATATCC
AGTATACCAATATTGATATACGTCACCAAATTAAGGATACCTCGCGCATC
CAATCAATAAATGAGCATTATCATAGCTCTTTAACCTCTCTCGCCAAAAC
TATTTCTCAGCCTGGATGGTTTCCGTTTCAAGTTATATCTGGGTTTCAAC
ATCATCGAACCTTTTGATACACACGTATCGTAGTCGTATGAAAAGTATGG
ATGCTTTCCTCGTGGATCCTtataattgaaaaaagaaaaaaacataattc
ATTGGCGTTAACAAAAATCGTAGTCGTATGAAAAGTATGGATGCTTTCCT
CGTGGATCCTtataattgaaaaaagaaaaaaacaattcattGGCGTTAAC
AAAAATCGTAGTCGTATGAAAAGTATGGATGCTTTCCTCGTGGAtcctta
tatttgaaaaaagaaaataaacataATTTACCGGCGTTAACAAAAAGATG
ATTATAGTTTTCTTTGACTATACATAAGACAGAGGATATTAAAAAATACT
GAGCTATCGAGTCGGCTTAAGTCAACCAACCCATGATGATCTTTTTGCAT
TCGTGGTAGAAACCATGCCAGCGTATTCACATGGTAGGTAAAATAAGACA
CACCTAAAGCGAATAGACCAAGGCTTTTACATCTGGCTTCGTTACAATac
cttattcatgatatgcaccacttcaatgtcttctgacattacatcatgga
cccaatagctgattggttgtaagtgacgtaaagtcAGTCAATGCataact
ttcaaccaatcagctgttgggttccTGGAGgtcattgcaatggtgcatat
catgaataaggaaCAAATCACTTTAcctgaaaaaattttaaaattacgAT
TACGGAAACGAAAATACTTTACTCCAAACACAAAACTACATAGCCGTACC
TGTGTGAAGTATGATTGAGGTAGTTGAATATNTACTCCAAACACAAAACT
ACAAAGCCATACCTGTGTGAAGTATGATTGAGATAGTTGAATATTCCCTT
TCAACAGGACGTTGACTTGATCGAGAACATCGACAGGTTCAGGGGTGATA
ATGTACAATCTTGTCGTCAGTGCGTCTATCTTCTCGATATTTCGAATTAT
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054538-exon-scaffold_243-1491911889:468097..469164 | TCONS_00054538-exon-scaffold_243-1491911889:468097..469164 | Clytia hemisphaerica | exon |
| TCONS_00054538-exon-scaffold_243-1510915933:468097..469164 | TCONS_00054538-exon-scaffold_243-1510915933:468097..469164 | Clytia hemisphaerica | exon |
| TCONS_00054538-exon-scaffold_243-1575043694:468097..469164 | TCONS_00054538-exon-scaffold_243-1575043694:468097..469164 | Clytia hemisphaerica | exon |
| TCONS_00054538-exon-scaffold_243-1491911889:469846..469865 | TCONS_00054538-exon-scaffold_243-1491911889:469846..469865 | Clytia hemisphaerica | exon |
| TCONS_00054538-exon-scaffold_243-1510915933:469846..469865 | TCONS_00054538-exon-scaffold_243-1510915933:469846..469865 | Clytia hemisphaerica | exon |
| TCONS_00054538-exon-scaffold_243-1575043694:469846..469865 | TCONS_00054538-exon-scaffold_243-1575043694:469846..469865 | Clytia hemisphaerica | exon |
| TCONS_00054538-exon-scaffold_243-1491911889:469929..470048 | TCONS_00054538-exon-scaffold_243-1491911889:469929..470048 | Clytia hemisphaerica | exon |
| TCONS_00054538-exon-scaffold_243-1510915933:469929..470048 | TCONS_00054538-exon-scaffold_243-1510915933:469929..470048 | Clytia hemisphaerica | exon |
| TCONS_00054538-exon-scaffold_243-1575043694:469929..470048 | TCONS_00054538-exon-scaffold_243-1575043694:469929..470048 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:468097..470048 + |
Blast
The following BLAST results are available for this feature:
|
