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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054528 ID=TCONS_00054528|Name=TCONS_00054528|organism=Clytia hemisphaerica|type=transcript|length=2125bp
AGGAGATTTTGAAGCATGGCGGCTTTGCTTCATCAAATCAAGAGTTCTCT
CTTTAACAAAATCATCGTGTGATTTCTCTACACCTTTGGATCAGTTCTAC
ACGTCATCGTCGACATTTTATCAACTGTTTCAAGAATATTTGACCATATA
TCTTTATCTTTAGTAAGTCTGGGAAAATTACATCACAATGCCTCCAGTGA
CGAACGAAGGATCCAAATTGAGAAATGACACTCACACCAAGAAGAACTAT
GGATCCAATGAAGACATTGGAAGTTATCAAGAATCGAATGATGCCTACGT
TGTCAAGGAGGATCGATACAACCTTggttatttatcatttttcctGATCG
GTATTGGAATGTTACTACCATGGAATTTCTTCATCAACGCTGACCAGTAC
TTTAAAAGCAAACTGAAAAACAATGAAAGTGATTTGAAATTGTTCGAAAG
TGCTTTTTCAATTTGCTCACAAATTCCATGCGGTATTGCATTGATTATCA
ATTTATGTTTGACAAATCGAGTTTCGAGGAACGGTCGTGTCATTTCAACG
TTGATCCTCTCGACAATCTGTTTCATTGTCACCACAGTACTGGTCAATGT
GGATACTTCAGCNCATCAACCAGCAGTGGAGAAAACGATTGTACCGGTGA
ACAAAGCTTTTGTGCCGTCATTCGTAACATCTATCCGACAGCACTATCCG
TCATGTGTGTTTTCGCCGTCACCTTGACTATCCAACCCGCCATTTTATCC
GGTATTCGATCAGTCAATGAAAGCAATGGATCCGCATTCACTAATAAATA
TTTCACGGCTGTTGTTGGATTCTTGATTTTCAACGTTGGTGATTTTGTTG
GTCGAATCATCTCTGGTTTCGTTCGAATAGTTGATAAGAAAGGACCCTGG
TTACCAATCCTCTGTGTTGCTCGAATTGCATTCATCCCACTGTTCATGTT
CTGTAATTTCCAACCACGTCATCACTTAACAGTTGTCTTCAATAAAGATA
TCTATCCTGTCATCTTTAATATCCTTTTCTCCGTCAGTAATGGCTATCTC
GCTAGTCTTTGTATGATGTACGGTCCGGAGCGTGCACCTGAAGGGATGAT
GGAGACAGCAGGTGCAACCATGCAATTATTTTTGACAATCGGACTTGGTT
TAGGATCAGTTTTATCCTTAGCTATTGTAGATACAATCTAATGATAGGCG
TTATGATATTTGAGTCTttcagtacacgttttttataagagcatcaaaag
attttgaagattttgaatgCTCNGCAGTTGTCGGTATGAGCTGTGCTGGA
ACCTTCGCCTCTATCACCAATATCATCTCCTTAGCTGTTGGTGATGATAT
CAAATTAGATTCAACAATCTATTTCAGTATCGCTTCTCTGGTTTTGTTCG
CTTGCATCTTTGTCTACATTGGTATGTTTCGATTACCAGTGTTGAAAgat
aaatttgaaatcaaacttTATGATGATAAAATGTCCAGTACTCCATCAAC
CAGCAGTGGAGAAAACGATTGTACCGGTGAACAAAGCTTTTGTGCCGTCA
TTCGTAACATCTATCCGACAGCACTATCCGTCATGTGTGTTTTCGCCGTC
ACCTTGACTATCCAACCCGCCATTTTATCCGGTATTCGATCAGTCAATGA
AAGCAATGGATCCGCATTCACTAATAAATATTTCACGGCTGTTGTTGGAT
TCTTGATTTTCAACGTTGGTGATTTTGTTGGTCGAATCATCTCTGGTTTC
GTTCGAATAGTTGATAAGAAAGGACCCTGGTTACCAATCCTCTGTGTTGC
TCGAATTGCATTCATCCCACTGTTCATGTTCTGTAATTTCCAACCACGTC
ATCACTTAACAGTTGTCTTCAATAAAGATATCTATCCTGTCATCTTTAAT
ATCCTTTTCTCCGTCAGTAATGGCTATCTCGCTAGTCTTTGTATGATGTA
CGGTCCGGAGCGTGCACCTGAAGGGATGATGGAGACAGCAGGTGCAACCA
TGCAATTATTTTTGACAATCGGACTTGGTTTAGGATCAGTTTTATCCTTA
GCTATTGTAGATACAATCTAATGATAGGCGTTATGATATTTGAGTCTttc
agtacacgttttttataagagcatc Run BLAST on NCBI protein sequence of TCONS_00054528-protein >TCONS_00054528-protein ID=TCONS_00054528-protein|Name=TCONS_00054528-protein|organism=Clytia hemisphaerica|type=polypeptide|length=261bp
MSCAGTFASITNIISLAVGDDIKLDSTIYFSIASLVLFACIFVYIGMFRL
PVLKDKFEIKLYDDKMSSTPSTSSGENDCTGEQSFCAVIRNIYPTALSVM
CVFAVTLTIQPAILSGIRSVNESNGSAFTNKYFTAVVGFLIFNVGDFVGR
IISGFVRIVDKKGPWLPILCVARIAFIPLFMFCNFQPRHHLTVVFNKDIY
PVIFNILFSVSNGYLASLCMMYGPERAPEGMMETAGATMQLFLTIGLGLG
SVLSLAIVDTI Run BLAST on NCBI transcript from alignment at scaffold_243:306494..309079+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054528 ID=TCONS_00054528|Name=TCONS_00054528|organism=Clytia hemisphaerica|type=transcript|length=2586bp|location=Sequence derived from alignment at scaffold_243:306494..309079+ (Clytia hemisphaerica)
AGGAGATTTTGAAGCATGGCGGCTTTGCTTCATCAAATCAAGAGTTCTCT
CTTTAACAAAATCATCGTGTGATTTCTCTACACCTTTGGATCAGTTCTAC
ACGTCATCGTCGACATTTTATCAACTGTTTCAAGAATATTTGACCATATA
TCTTTATCTTTAGTAAGGTGAGTGCTACAAGTATCTACTTTATATACTCC
TGTCAATCATTTGCTTAAACatgtaaaaagttttttaatttgataatgGA
AAAATGGATACAAATGCTGCtatgccattcaaatttcctcAGTGAATTAG
GCaaatatttcttatttcttcacatatatactGTATCATAGCAAAGCCCA
CTCTTTCCAcccaatctttaaaaattaaccaatttgACGCCAGTTAGATT
TCAATTGCTACGCTTTTCCCACGAGGTCTAGATAATTACTTTAGTTGGGG
GAAATAACTGAGgaaattctacttttaattATTTAACAAACTAAATTAAA
TAAATCATGACTATGATTTCCAGGTGATTTTCGAGCAAGATTATTAGCCA
AATGAAGTTGCATGAGCTTTTAAAGACCCATACAtaaatcatacaaaaac
aaacaatacTTCTCATTCATTTTTATAGTCTGGGAAAATTACATCACAAT
GCCTCCAGTGACGAACGAAGGATCCAAATTGAGAAATGACACTCACACCA
AGAAGAACTATGGATCCAATGAAGACATTGGAAGTTATCAAGAATCGAAT
GATGCCTACGTTGTCAAGGAGGATCGATACAACCTTggttatttatcatt
tttcctGATCGGTATTGGAATGTTACTACCATGGAATTTCTTCATCAACG
CTGACCAGTACTTTAAAAGCAAACTGAAAAACAATGAAAGTGATTTGAAA
TTGTTCGAAAGTGCTTTTTCAATTTGCTCACAAATTCCATGCGGTATTGC
ATTGATTATCAATTTATGTTTGACAAATCGAGTTTCGAGGAACGGTCGTG
TCATTTCAACGTTGATCCTCTCGACAATCTGTTTCATTGTCACCACAGTA
CTGGTCAATGTGGATACTTCAGCNCATCAACCAGCAGTGGAGAAAACGAT
TGTACCGGTGAACAAAGCTTTTGTGCCGTCATTCGTAACATCTATCCGAC
AGCACTATCCGTCATGTGTGTTTTCGCCGTCACCTTGACTATCCAACCCG
CCATTTTATCCGGTATTCGATCAGTCAATGAAAGCAATGGATCCGCATTC
ACTAATAAATATTTCACGGCTGTTGTTGGATTCTTGATTTTCAACGTTGG
TGATTTTGTTGGTCGAATCATCTCTGGTTTCGTTCGAATAGTTGATAAGA
AAGGACCCTGGTTACCAATCCTCTGTGTTGCTCGAATTGCATTCATCCCA
CTGTTCATGTTCTGTAATTTCCAACCACGTCATCACTTAACAGTTGTCTT
CAATAAAGATATCTATCCTGTCATCTTTAATATCCTTTTCTCCGTCAGTA
ATGGCTATCTCGCTAGTCTTTGTATGATGTACGGTCCGGAGCGTGCACCT
GAAGGGATGATGGAGACAGCAGGTGCAACCATGCAATTATTTTTGACAAT
CGGACTTGGTTTAGGATCAGTTTTATCCTTAGCTATTGTAGATACAATCT
AATGATAGGCGTTATGATATTTGAGTCTttcagtacacgttttttataag
agcatcaaaagattttgaagattttgaatgCTCNGCAGTTGTCGGTATGA
GCTGTGCTGGAACCTTCGCCTCTATCACCAATATCATCTCCTTAGCTGTT
GGTGATGATATCAAATTAGATTCAACAATCTATTTCAGTATCGCTTCTCT
GGTTTTGTTCGCTTGCATCTTTGTCTACATTGGTATGTTTCGATTACCAG
TGTTGAAAgataaatttgaaatcaaacttTATGATGATAAAATGTCCAGT
ACTCCATCAACCAGCAGTGGAGAAAACGATTGTACCGGTGAACAAAGCTT
TTGTGCCGTCATTCGTAACATCTATCCGACAGCACTATCCGTCATGTGTG
TTTTCGCCGTCACCTTGACTATCCAACCCGCCATTTTATCCGGTATTCGA
TCAGTCAATGAAAGCAATGGATCCGCATTCACTAATAAATATTTCACGGC
TGTTGTTGGATTCTTGATTTTCAACGTTGGTGATTTTGTTGGTCGAATCA
TCTCTGGTTTCGTTCGAATAGTTGATAAGAAAGGACCCTGGTTACCAATC
CTCTGTGTTGCTCGAATTGCATTCATCCCACTGTTCATGTTCTGTAATTT
CCAACCACGTCATCACTTAACAGTTGTCTTCAATAAAGATATCTATCCTG
TCATCTTTAATATCCTTTTCTCCGTCAGTAATGGCTATCTCGCTAGTCTT
TGTATGATGTACGGTCCGGAGCGTGCACCTGAAGGGATGATGGAGACAGC
AGGTGCAACCATGCAATTATTTTTGACAATCGGACTTGGTTTAGGATCAG
TTTTATCCTTAGCTATTGTAGATACAATCTAATGATAGGCGTTATGATAT
TTGAGTCTttcagtacacgttttttataagagcatc Coding sequence (CDS) from alignment at scaffold_243:306494..309079+ >TCONS_00054528 ID=TCONS_00054528|Name=TCONS_00054528|organism=Clytia hemisphaerica|type=CDS|length=786bp|location=Sequence derived from alignment at scaffold_243:306494..309079+ (Clytia hemisphaerica)
ATGAGCTGTGCTGGAACCTTCGCCTCTATCACCAATATCATCTCCTTAGC
TGTTGGTGATGATATCAAATTAGATTCAACAATCTATTTCAGTATCGCTT
CTCTGGTTTTGTTCGCTTGCATCTTTGTCTACATTGGTATGTTTCGATTA
CCAGTGTTGAAAgataaatttgaaatcaaacttTATGATGATAAAATGTC
CAGTACTCCATCAACCAGCAGTGGAGAAAACGATTGTACCGGTGAACAAA
GCTTTTGTGCCGTCATTCGTAACATCTATCCGACAGCACTATCCGTCATG
TGTGTTTTCGCCGTCACCTTGACTATCCAACCCGCCATTTTATCCGGTAT
TCGATCAGTCAATGAAAGCAATGGATCCGCATTCACTAATAAATATTTCA
CGGCTGTTGTTGGATTCTTGATTTTCAACGTTGGTGATTTTGTTGGTCGA
ATCATCTCTGGTTTCGTTCGAATAGTTGATAAGAAAGGACCCTGGTTACC
AATCCTCTGTGTTGCTCGAATTGCATTCATCCCACTGTTCATGTTCTGTA
ATTTCCAACCACGTCATCACTTAACAGTTGTCTTCAATAAAGATATCTAT
CCTGTCATCTTTAATATCCTTTTCTCCGTCAGTAATGGCTATCTCGCTAG
TCTTTGTATGATGTACGGTCCGGAGCGTGCACCTGAAGGGATGATGGAGA
CAGCAGGTGCAACCATGCAATTATTTTTGACAATCGGACTTGGTTTAGGA
TCAGTTTTATCCTTAGCTATTGTAGATACAATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054528-exon-scaffold_243-1491911889:306494..306660 | TCONS_00054528-exon-scaffold_243-1491911889:306494..306660 | Clytia hemisphaerica | exon |
| TCONS_00054528-exon-scaffold_243-1510915933:306494..306660 | TCONS_00054528-exon-scaffold_243-1510915933:306494..306660 | Clytia hemisphaerica | exon |
| TCONS_00054528-exon-scaffold_243-1575043694:306494..306660 | TCONS_00054528-exon-scaffold_243-1575043694:306494..306660 | Clytia hemisphaerica | exon |
| TCONS_00054528-exon-scaffold_243-1491911889:307122..309079 | TCONS_00054528-exon-scaffold_243-1491911889:307122..309079 | Clytia hemisphaerica | exon |
| TCONS_00054528-exon-scaffold_243-1510915933:307122..309079 | TCONS_00054528-exon-scaffold_243-1510915933:307122..309079 | Clytia hemisphaerica | exon |
| TCONS_00054528-exon-scaffold_243-1575043694:307122..309079 | TCONS_00054528-exon-scaffold_243-1575043694:307122..309079 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:306494..309079 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005337 | nucleoside transmembrane transporter activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006810 | transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006810 |
transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0005337 |
nucleoside transmembrane transporter activity |
Blast
BLAST of TCONS_00054528 vs. Swiss-Prot (Human)
Match: S29A1 (Equilibrative nucleoside transporter 1 OS=Homo sapiens GN=SLC29A1 PE=1 SV=3) HSP 1 Score: 152.14 bits (383), Expect = 1.461e-39 Identity = 96/273 (35.16%), Postives = 144/273 (52.75%), Query Frame = 2
Query: 1283 GMSCAGTFASITNIISLAVGDDIKLDSTIYFSIASLVLFACIFVYIGMFRLPVLKDKFEIKLYD--DKMSSTPSTSSGENDCTGEQ----------------SFCAVIRNIYPTALSVMCVFAVTLTIQPAILSGIRSVNESNGSAFTNKYFTAVVGFLIFNVGDFVGRIISGFVRIVDKKGPWLPILCVARIAFIPLFMFCNFQPRHHLTVVFNKDIYPVIFNILFSVSNGYLASLCMMYGPERAPEGMMETAGATMQLFLTIGLGLGSVLS 2047
G AG FAS+ I ++A G ++ + YF A V+ I Y+G+ RL + ++KL ++ + S GE G++ S A+++NI A SV +F +T+ + PA+ ++S GS+ +YF V FL FN+ D++GR ++ K WLP L +AR+ F+PL + CN +PR +LTVVF D + + F F+ SNGYLASLCM +GP++ ETAGA M FL +GL LG+V S
Sbjct: 179 GQGLAGFFASVAMICAIASGSELSESAFGYFITACAVIILTIICYLGLPRLEFYRYYQQLKLEGPGEQETKLDLISKGEEPRAGKEESGVSVSNSQPTNESHSIKAILKNISVLAFSVCFIFTITIGMFPAVTVEVKS--SIAGSSTWERYFIPVSCFLTFNIFDWLGRSLTAVFMWPGKDSRWLPSLVLARLVFVPLLLLCNIKPRRYLTVVFEHDAWFIFFMAAFAFSNGYLASLCMCFGPKKVKPAEAETAGAIMAFFLCLGLALGAVFS 449 HSP 2 Score: 132.494 bits (332), Expect = 7.661e-33 Identity = 76/186 (40.86%), Postives = 108/186 (58.06%), Query Frame = 1
Query: 610 SXSTSSGENDCTGEQSFCAVIRNIYPTALSVMCVFAVTLTIQPAILSGIRSVNESNGSAFTNKYFTAVVGFLIFNVGDFVGRIISGFVRIVDKKGPWLPILCVARIAFIPLFMFCNFQPRHHLTVVFNKDIYPVIFNILFSVSNGYLASLCMMYGPERAPEGMMETAGATMQLFLTIGLGLGSVLS 1167
S S S N+ S A+++NI A SV +F +T+ + PA+ ++S GS+ +YF V FL FN+ D++GR ++ K WLP L +AR+ F+PL + CN +PR +LTVVF D + + F F+ SNGYLASLCM +GP++ ETAGA M FL +GL LG+V S
Sbjct: 269 SVSNSQPTNE---SHSIKAILKNISVLAFSVCFIFTITIGMFPAVTVEVKS--SIAGSSTWERYFIPVSCFLTFNIFDWLGRSLTAVFMWPGKDSRWLPSLVLARLVFVPLLLLCNIKPRRYLTVVFEHDAWFIFFMAAFAFSNGYLASLCMCFGPKKVKPAEAETAGAIMAFFLCLGLALGAVFS 449
The following BLAST results are available for this feature:
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