TCONS_00054528 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054528
Unique NameTCONS_00054528
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2125

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054528 ID=TCONS_00054528|Name=TCONS_00054528|organism=Clytia hemisphaerica|type=transcript|length=2125bp
AGGAGATTTTGAAGCATGGCGGCTTTGCTTCATCAAATCAAGAGTTCTCT
CTTTAACAAAATCATCGTGTGATTTCTCTACACCTTTGGATCAGTTCTAC
ACGTCATCGTCGACATTTTATCAACTGTTTCAAGAATATTTGACCATATA
TCTTTATCTTTAGTAAGTCTGGGAAAATTACATCACAATGCCTCCAGTGA
CGAACGAAGGATCCAAATTGAGAAATGACACTCACACCAAGAAGAACTAT
GGATCCAATGAAGACATTGGAAGTTATCAAGAATCGAATGATGCCTACGT
TGTCAAGGAGGATCGATACAACCTTggttatttatcatttttcctGATCG
GTATTGGAATGTTACTACCATGGAATTTCTTCATCAACGCTGACCAGTAC
TTTAAAAGCAAACTGAAAAACAATGAAAGTGATTTGAAATTGTTCGAAAG
TGCTTTTTCAATTTGCTCACAAATTCCATGCGGTATTGCATTGATTATCA
ATTTATGTTTGACAAATCGAGTTTCGAGGAACGGTCGTGTCATTTCAACG
TTGATCCTCTCGACAATCTGTTTCATTGTCACCACAGTACTGGTCAATGT
GGATACTTCAGCNCATCAACCAGCAGTGGAGAAAACGATTGTACCGGTGA
ACAAAGCTTTTGTGCCGTCATTCGTAACATCTATCCGACAGCACTATCCG
TCATGTGTGTTTTCGCCGTCACCTTGACTATCCAACCCGCCATTTTATCC
GGTATTCGATCAGTCAATGAAAGCAATGGATCCGCATTCACTAATAAATA
TTTCACGGCTGTTGTTGGATTCTTGATTTTCAACGTTGGTGATTTTGTTG
GTCGAATCATCTCTGGTTTCGTTCGAATAGTTGATAAGAAAGGACCCTGG
TTACCAATCCTCTGTGTTGCTCGAATTGCATTCATCCCACTGTTCATGTT
CTGTAATTTCCAACCACGTCATCACTTAACAGTTGTCTTCAATAAAGATA
TCTATCCTGTCATCTTTAATATCCTTTTCTCCGTCAGTAATGGCTATCTC
GCTAGTCTTTGTATGATGTACGGTCCGGAGCGTGCACCTGAAGGGATGAT
GGAGACAGCAGGTGCAACCATGCAATTATTTTTGACAATCGGACTTGGTT
TAGGATCAGTTTTATCCTTAGCTATTGTAGATACAATCTAATGATAGGCG
TTATGATATTTGAGTCTttcagtacacgttttttataagagcatcaaaag
attttgaagattttgaatgCTCNGCAGTTGTCGGTATGAGCTGTGCTGGA
ACCTTCGCCTCTATCACCAATATCATCTCCTTAGCTGTTGGTGATGATAT
CAAATTAGATTCAACAATCTATTTCAGTATCGCTTCTCTGGTTTTGTTCG
CTTGCATCTTTGTCTACATTGGTATGTTTCGATTACCAGTGTTGAAAgat
aaatttgaaatcaaacttTATGATGATAAAATGTCCAGTACTCCATCAAC
CAGCAGTGGAGAAAACGATTGTACCGGTGAACAAAGCTTTTGTGCCGTCA
TTCGTAACATCTATCCGACAGCACTATCCGTCATGTGTGTTTTCGCCGTC
ACCTTGACTATCCAACCCGCCATTTTATCCGGTATTCGATCAGTCAATGA
AAGCAATGGATCCGCATTCACTAATAAATATTTCACGGCTGTTGTTGGAT
TCTTGATTTTCAACGTTGGTGATTTTGTTGGTCGAATCATCTCTGGTTTC
GTTCGAATAGTTGATAAGAAAGGACCCTGGTTACCAATCCTCTGTGTTGC
TCGAATTGCATTCATCCCACTGTTCATGTTCTGTAATTTCCAACCACGTC
ATCACTTAACAGTTGTCTTCAATAAAGATATCTATCCTGTCATCTTTAAT
ATCCTTTTCTCCGTCAGTAATGGCTATCTCGCTAGTCTTTGTATGATGTA
CGGTCCGGAGCGTGCACCTGAAGGGATGATGGAGACAGCAGGTGCAACCA
TGCAATTATTTTTGACAATCGGACTTGGTTTAGGATCAGTTTTATCCTTA
GCTATTGTAGATACAATCTAATGATAGGCGTTATGATATTTGAGTCTttc
agtacacgttttttataagagcatc
Run BLAST on NCBI

protein sequence of TCONS_00054528-protein

>TCONS_00054528-protein ID=TCONS_00054528-protein|Name=TCONS_00054528-protein|organism=Clytia hemisphaerica|type=polypeptide|length=261bp
MSCAGTFASITNIISLAVGDDIKLDSTIYFSIASLVLFACIFVYIGMFRL
PVLKDKFEIKLYDDKMSSTPSTSSGENDCTGEQSFCAVIRNIYPTALSVM
CVFAVTLTIQPAILSGIRSVNESNGSAFTNKYFTAVVGFLIFNVGDFVGR
IISGFVRIVDKKGPWLPILCVARIAFIPLFMFCNFQPRHHLTVVFNKDIY
PVIFNILFSVSNGYLASLCMMYGPERAPEGMMETAGATMQLFLTIGLGLG
SVLSLAIVDTI
Run BLAST on NCBI

transcript from alignment at scaffold_243:306494..309079+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054528 ID=TCONS_00054528|Name=TCONS_00054528|organism=Clytia hemisphaerica|type=transcript|length=2586bp|location=Sequence derived from alignment at scaffold_243:306494..309079+ (Clytia hemisphaerica)
AGGAGATTTTGAAGCATGGCGGCTTTGCTTCATCAAATCAAGAGTTCTCT
CTTTAACAAAATCATCGTGTGATTTCTCTACACCTTTGGATCAGTTCTAC
ACGTCATCGTCGACATTTTATCAACTGTTTCAAGAATATTTGACCATATA
TCTTTATCTTTAGTAAGGTGAGTGCTACAAGTATCTACTTTATATACTCC
TGTCAATCATTTGCTTAAACatgtaaaaagttttttaatttgataatgGA
AAAATGGATACAAATGCTGCtatgccattcaaatttcctcAGTGAATTAG
GCaaatatttcttatttcttcacatatatactGTATCATAGCAAAGCCCA
CTCTTTCCAcccaatctttaaaaattaaccaatttgACGCCAGTTAGATT
TCAATTGCTACGCTTTTCCCACGAGGTCTAGATAATTACTTTAGTTGGGG
GAAATAACTGAGgaaattctacttttaattATTTAACAAACTAAATTAAA
TAAATCATGACTATGATTTCCAGGTGATTTTCGAGCAAGATTATTAGCCA
AATGAAGTTGCATGAGCTTTTAAAGACCCATACAtaaatcatacaaaaac
aaacaatacTTCTCATTCATTTTTATAGTCTGGGAAAATTACATCACAAT
GCCTCCAGTGACGAACGAAGGATCCAAATTGAGAAATGACACTCACACCA
AGAAGAACTATGGATCCAATGAAGACATTGGAAGTTATCAAGAATCGAAT
GATGCCTACGTTGTCAAGGAGGATCGATACAACCTTggttatttatcatt
tttcctGATCGGTATTGGAATGTTACTACCATGGAATTTCTTCATCAACG
CTGACCAGTACTTTAAAAGCAAACTGAAAAACAATGAAAGTGATTTGAAA
TTGTTCGAAAGTGCTTTTTCAATTTGCTCACAAATTCCATGCGGTATTGC
ATTGATTATCAATTTATGTTTGACAAATCGAGTTTCGAGGAACGGTCGTG
TCATTTCAACGTTGATCCTCTCGACAATCTGTTTCATTGTCACCACAGTA
CTGGTCAATGTGGATACTTCAGCNCATCAACCAGCAGTGGAGAAAACGAT
TGTACCGGTGAACAAAGCTTTTGTGCCGTCATTCGTAACATCTATCCGAC
AGCACTATCCGTCATGTGTGTTTTCGCCGTCACCTTGACTATCCAACCCG
CCATTTTATCCGGTATTCGATCAGTCAATGAAAGCAATGGATCCGCATTC
ACTAATAAATATTTCACGGCTGTTGTTGGATTCTTGATTTTCAACGTTGG
TGATTTTGTTGGTCGAATCATCTCTGGTTTCGTTCGAATAGTTGATAAGA
AAGGACCCTGGTTACCAATCCTCTGTGTTGCTCGAATTGCATTCATCCCA
CTGTTCATGTTCTGTAATTTCCAACCACGTCATCACTTAACAGTTGTCTT
CAATAAAGATATCTATCCTGTCATCTTTAATATCCTTTTCTCCGTCAGTA
ATGGCTATCTCGCTAGTCTTTGTATGATGTACGGTCCGGAGCGTGCACCT
GAAGGGATGATGGAGACAGCAGGTGCAACCATGCAATTATTTTTGACAAT
CGGACTTGGTTTAGGATCAGTTTTATCCTTAGCTATTGTAGATACAATCT
AATGATAGGCGTTATGATATTTGAGTCTttcagtacacgttttttataag
agcatcaaaagattttgaagattttgaatgCTCNGCAGTTGTCGGTATGA
GCTGTGCTGGAACCTTCGCCTCTATCACCAATATCATCTCCTTAGCTGTT
GGTGATGATATCAAATTAGATTCAACAATCTATTTCAGTATCGCTTCTCT
GGTTTTGTTCGCTTGCATCTTTGTCTACATTGGTATGTTTCGATTACCAG
TGTTGAAAgataaatttgaaatcaaacttTATGATGATAAAATGTCCAGT
ACTCCATCAACCAGCAGTGGAGAAAACGATTGTACCGGTGAACAAAGCTT
TTGTGCCGTCATTCGTAACATCTATCCGACAGCACTATCCGTCATGTGTG
TTTTCGCCGTCACCTTGACTATCCAACCCGCCATTTTATCCGGTATTCGA
TCAGTCAATGAAAGCAATGGATCCGCATTCACTAATAAATATTTCACGGC
TGTTGTTGGATTCTTGATTTTCAACGTTGGTGATTTTGTTGGTCGAATCA
TCTCTGGTTTCGTTCGAATAGTTGATAAGAAAGGACCCTGGTTACCAATC
CTCTGTGTTGCTCGAATTGCATTCATCCCACTGTTCATGTTCTGTAATTT
CCAACCACGTCATCACTTAACAGTTGTCTTCAATAAAGATATCTATCCTG
TCATCTTTAATATCCTTTTCTCCGTCAGTAATGGCTATCTCGCTAGTCTT
TGTATGATGTACGGTCCGGAGCGTGCACCTGAAGGGATGATGGAGACAGC
AGGTGCAACCATGCAATTATTTTTGACAATCGGACTTGGTTTAGGATCAG
TTTTATCCTTAGCTATTGTAGATACAATCTAATGATAGGCGTTATGATAT
TTGAGTCTttcagtacacgttttttataagagcatc

Coding sequence (CDS) from alignment at scaffold_243:306494..309079+

>TCONS_00054528 ID=TCONS_00054528|Name=TCONS_00054528|organism=Clytia hemisphaerica|type=CDS|length=786bp|location=Sequence derived from alignment at scaffold_243:306494..309079+ (Clytia hemisphaerica)
ATGAGCTGTGCTGGAACCTTCGCCTCTATCACCAATATCATCTCCTTAGC
TGTTGGTGATGATATCAAATTAGATTCAACAATCTATTTCAGTATCGCTT
CTCTGGTTTTGTTCGCTTGCATCTTTGTCTACATTGGTATGTTTCGATTA
CCAGTGTTGAAAgataaatttgaaatcaaacttTATGATGATAAAATGTC
CAGTACTCCATCAACCAGCAGTGGAGAAAACGATTGTACCGGTGAACAAA
GCTTTTGTGCCGTCATTCGTAACATCTATCCGACAGCACTATCCGTCATG
TGTGTTTTCGCCGTCACCTTGACTATCCAACCCGCCATTTTATCCGGTAT
TCGATCAGTCAATGAAAGCAATGGATCCGCATTCACTAATAAATATTTCA
CGGCTGTTGTTGGATTCTTGATTTTCAACGTTGGTGATTTTGTTGGTCGA
ATCATCTCTGGTTTCGTTCGAATAGTTGATAAGAAAGGACCCTGGTTACC
AATCCTCTGTGTTGCTCGAATTGCATTCATCCCACTGTTCATGTTCTGTA
ATTTCCAACCACGTCATCACTTAACAGTTGTCTTCAATAAAGATATCTAT
CCTGTCATCTTTAATATCCTTTTCTCCGTCAGTAATGGCTATCTCGCTAG
TCTTTGTATGATGTACGGTCCGGAGCGTGCACCTGAAGGGATGATGGAGA
CAGCAGGTGCAACCATGCAATTATTTTTGACAATCGGACTTGGTTTAGGA
TCAGTTTTATCCTTAGCTATTGTAGATACAATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034381XLOC_034381Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054528-proteinTCONS_00054528-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054528-exon-scaffold_243-1491911889:306494..306660TCONS_00054528-exon-scaffold_243-1491911889:306494..306660Clytia hemisphaericaexon
TCONS_00054528-exon-scaffold_243-1510915933:306494..306660TCONS_00054528-exon-scaffold_243-1510915933:306494..306660Clytia hemisphaericaexon
TCONS_00054528-exon-scaffold_243-1575043694:306494..306660TCONS_00054528-exon-scaffold_243-1575043694:306494..306660Clytia hemisphaericaexon
TCONS_00054528-exon-scaffold_243-1491911889:307122..309079TCONS_00054528-exon-scaffold_243-1491911889:307122..309079Clytia hemisphaericaexon
TCONS_00054528-exon-scaffold_243-1510915933:307122..309079TCONS_00054528-exon-scaffold_243-1510915933:307122..309079Clytia hemisphaericaexon
TCONS_00054528-exon-scaffold_243-1575043694:307122..309079TCONS_00054528-exon-scaffold_243-1575043694:307122..309079Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:306494..309079 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.249654	0	0.0159373	0.160532	0.438308	0.433918	0.465596	0.852651	0.223781	0.209116	0.528427	0.651262	4.46385	3.84131	3.68533	9.53887	7.95279	8.14417	0.432209	0.0657726	1.13462	1.50802	1.70642	1.2324	0.591021	0.00251545	0.470424	0.320418	7.85657	3.30208
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002259Eqnu_transpt
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005337nucleoside transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005337 nucleoside transmembrane transporter activity
Blast
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BLAST of TCONS_00054528 vs. Swiss-Prot (Human)
Match: S29A1 (Equilibrative nucleoside transporter 1 OS=Homo sapiens GN=SLC29A1 PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 1.461e-39
Identity = 96/273 (35.16%), Postives = 144/273 (52.75%), Query Frame = 2 
Query: 1283 GMSCAGTFASITNIISLAVGDDIKLDSTIYFSIASLVLFACIFVYIGMFRLPVLKDKFEIKLYD--DKMSSTPSTSSGENDCTGEQ----------------SFCAVIRNIYPTALSVMCVFAVTLTIQPAILSGIRSVNESNGSAFTNKYFTAVVGFLIFNVGDFVGRIISGFVRIVDKKGPWLPILCVARIAFIPLFMFCNFQPRHHLTVVFNKDIYPVIFNILFSVSNGYLASLCMMYGPERAPEGMMETAGATMQLFLTIGLGLGSVLS 2047
            G   AG FAS+  I ++A G ++   +  YF  A  V+   I  Y+G+ RL   +   ++KL    ++ +     S GE    G++                S  A+++NI   A SV  +F +T+ + PA+   ++S     GS+   +YF  V  FL FN+ D++GR ++       K   WLP L +AR+ F+PL + CN +PR +LTVVF  D + + F   F+ SNGYLASLCM +GP++      ETAGA M  FL +GL LG+V S
Sbjct:  179 GQGLAGFFASVAMICAIASGSELSESAFGYFITACAVIILTIICYLGLPRLEFYRYYQQLKLEGPGEQETKLDLISKGEEPRAGKEESGVSVSNSQPTNESHSIKAILKNISVLAFSVCFIFTITIGMFPAVTVEVKS--SIAGSSTWERYFIPVSCFLTFNIFDWLGRSLTAVFMWPGKDSRWLPSLVLARLVFVPLLLLCNIKPRRYLTVVFEHDAWFIFFMAAFAFSNGYLASLCMCFGPKKVKPAEAETAGAIMAFFLCLGLALGAVFS 449

HSP 2 Score: 132.494 bits (332), Expect = 7.661e-33
Identity = 76/186 (40.86%), Postives = 108/186 (58.06%), Query Frame = 1 
Query:  610 SXSTSSGENDCTGEQSFCAVIRNIYPTALSVMCVFAVTLTIQPAILSGIRSVNESNGSAFTNKYFTAVVGFLIFNVGDFVGRIISGFVRIVDKKGPWLPILCVARIAFIPLFMFCNFQPRHHLTVVFNKDIYPVIFNILFSVSNGYLASLCMMYGPERAPEGMMETAGATMQLFLTIGLGLGSVLS 1167
            S S S   N+     S  A+++NI   A SV  +F +T+ + PA+   ++S     GS+   +YF  V  FL FN+ D++GR ++       K   WLP L +AR+ F+PL + CN +PR +LTVVF  D + + F   F+ SNGYLASLCM +GP++      ETAGA M  FL +GL LG+V S
Sbjct:  269 SVSNSQPTNE---SHSIKAILKNISVLAFSVCFIFTITIGMFPAVTVEVKS--SIAGSSTWERYFIPVSCFLTFNIFDWLGRSLTAVFMWPGKDSRWLPSLVLARLVFVPLLLLCNIKPRRYLTVVFEHDAWFIFFMAAFAFSNGYLASLCMCFGPKKVKPAEAETAGAIMAFFLCLGLALGAVFS 449
The following BLAST results are available for this feature:
BLAST of TCONS_00054528 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S29A11.461e-3935.16Equilibrative nucleoside transporter 1 OS=Homo sap... [more]
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