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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054499 ID=TCONS_00054499|Name=TCONS_00054499|organism=Clytia hemisphaerica|type=transcript|length=1131bp
AAACGAGAGAAAATGATACAATCAGCACTTTTGGGGAAACTATAAAAAAG
GGGCCGGTTGAACGAGAACCAATCATTGCTTGCAAAGCTACGAATAAAAC
AACTTCTTCGATAACAGCATCTGCTTCAATTAACGTTCAAAGTCGCTGCT
AGACACTACCACGGATTTGATTACAAAATAGTCACAAATAATCGAAACAT
ATCCTGGGAAGACAACCACCGAAGCTGATCAGCATGGAACTATCTATCAT
CACCAATTCCATAATTGCGATTCTGATTGCTGTTCTAACCATGTTCATTA
TGCTTGTGTTCTACAAATGTCCAATTCTGTTGTTATACTTCCCGAACAAG
ATTCTGTGTAGCATGGTCGTTTGTGAATGGTTTCGATCTATTACAGTCGC
CTTACATATTATTATTGAAGTATCGGAGGAGTTGCACGATCCTGATTGCC
ATAGCTGTTTGGTGTTCAATATTCTGGTAGACATCATCACCTCTGGTTTA
ACCAAAGTTGCAACTTTACATTTATGCGCTTTCGTATTTGAGCGTTACAT
ATCAGTCATGTCAGCTTTGAAATATAACAGCATTATAACTAACAAACTTT
TTAAACAGATTTTACTGTCAGTCTGGCTCATCCCGTTGATTGCATCCATA
CTCCAAGTCATCTATTTGTATCCTTACATATTCTCAATACCTGAGCAAAT
GGGTGAAGATTGGATTCTCATCTTCGAAGTGTGTCTCACCTTCCTCTCTA
TGTTATTGTTCACCGCACTACCCATCCTGTTCATGTTTCCAGCCTACGTT
ATCATATTCCAAGAGATTCGCCGACTACTCAAAGGACAGTCCGATATCAA
ATTTTACGGGCAagtaaaaacggctaaaaaacagttACACGCCGCACTAT
GCCTACTTTTAATGTTTGTTGCGTTCGTATTGTTCACGTTGCCGTATTTC
GCGTTACGCATGTATGTTGACGTAATGATATGGcttgaagaagaaattga
acTGACTCATGAAGTTTTCAATATACTGTATACCATTAAAAATTTAACAG
CACTTTGTAACCCTTTAATTTATACACTTATGAATCGTGATTTTAAACGT
AGAGCACTATCTCTACTGAAActaaatttat Run BLAST on NCBI protein sequence of TCONS_00054499-protein >TCONS_00054499-protein ID=TCONS_00054499-protein|Name=TCONS_00054499-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
MELSIITNSIIAILIAVLTMFIMLVFYKCPILLLYFPNKILCSMVVCEWF
RSITVALHIIIEVSEELHDPDCHSCLVFNILVDIITSGLTKVATLHLCAF
VFERYISVMSALKYNSIITNKLFKQILLSVWLIPLIASILQVIYLYPYIF
SIPEQMGEDWILIFEVCLTFLSMLLFTALPILFMFPAYVIIFQEIRRLLK
GQSDIKFYGQVKTAKKQLHAALCLLLMFVAFVLFTLPYFALRMYVDVMIW
LEEEIELTHEVFNILYTIKNLTALCNPLIYTLMNRDFKRRALSLLKLNL Run BLAST on NCBI transcript from alignment at scaffold_242:1588941..1590071 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054499 ID=TCONS_00054499|Name=TCONS_00054499|organism=Clytia hemisphaerica|type=transcript|length=1131bp|location=Sequence derived from alignment at scaffold_242:1588941..1590071 (Clytia hemisphaerica)
ataaatttagTTTCAGTAGAGATAGTGCTCTACGTTTAAAATCACGATTC
ATAAGTGTATAAATTAAAGGGTTACAAAGTGCTGTTAAATTTTTAATGGT
ATACAGTATATTGAAAACTTCATGAGTCAgttcaatttcttcttcaagCC
ATATCATTACGTCAACATACATGCGTAACGCGAAATACGGCAACGTGAAC
AATACGAACGCAACAAACATTAAAAGTAGGCATAGTGCGGCGTGTaactg
ttttttagccgtttttactTGCCCGTAAAATTTGATATCGGACTGTCCTT
TGAGTAGTCGGCGAATCTCTTGGAATATGATAACGTAGGCTGGAAACATG
AACAGGATGGGTAGTGCGGTGAACAATAACATAGAGAGGAAGGTGAGACA
CACTTCGAAGATGAGAATCCAATCTTCACCCATTTGCTCAGGTATTGAGA
ATATGTAAGGATACAAATAGATGACTTGGAGTATGGATGCAATCAACGGG
ATGAGCCAGACTGACAGTAAAATCTGTTTAAAAAGTTTGTTAGTTATAAT
GCTGTTATATTTCAAAGCTGACATGACTGATATGTAACGCTCAAATACGA
AAGCGCATAAATGTAAAGTTGCAACTTTGGTTAAACCAGAGGTGATGATG
TCTACCAGAATATTGAACACCAAACAGCTATGGCAATCAGGATCGTGCAA
CTCCTCCGATACTTCAATAATAATATGTAAGGCGACTGTAATAGATCGAA
ACCATTCACAAACGACCATGCTACACAGAATCTTGTTCGGGAAGTATAAC
AACAGAATTGGACATTTGTAGAACACAAGCATAATGAACATGGTTAGAAC
AGCAATCAGAATCGCAATTATGGAATTGGTGATGATAGATAGTTCCATGC
TGATCAGCTTCGGTGGTTGTCTTCCCAGGATATGTTTCGATTATTTGTGA
CTATTTTGTAATCAAATCCGTGGTAGTGTCTAGCAGCGACTTTGAACGTT
AATTGAAGCAGATGCTGTTATCGAAGAAGTTGTTTTATTCGTAGCTTTGC
AAGCAATGATTGGTTCTCGTTCAACCGGCCCCTTTTTTATAGTTTCCCCA
AAAGTGCTGATTGTATCATTTTCTCTCGTTT Coding sequence (CDS) from alignment at scaffold_242:1588941..1590071 >TCONS_00054499 ID=TCONS_00054499|Name=TCONS_00054499|organism=Clytia hemisphaerica|type=CDS|length=897bp|location=Sequence derived from alignment at scaffold_242:1588941..1590071 (Clytia hemisphaerica)
taaatttagTTTCAGTAGAGATAGTGCTCTACGTTTAAAATCACGATTCA
TAAGTGTATAAATTAAAGGGTTACAAAGTGCTGTTAAATTTTTAATGGTA
TACAGTATATTGAAAACTTCATGAGTCAgttcaatttcttcttcaagCCA
TATCATTACGTCAACATACATGCGTAACGCGAAATACGGCAACGTGAACA
ATACGAACGCAACAAACATTAAAAGTAGGCATAGTGCGGCGTGTaactgt
tttttagccgtttttactTGCCCGTAAAATTTGATATCGGACTGTCCTTT
GAGTAGTCGGCGAATCTCTTGGAATATGATAACGTAGGCTGGAAACATGA
ACAGGATGGGTAGTGCGGTGAACAATAACATAGAGAGGAAGGTGAGACAC
ACTTCGAAGATGAGAATCCAATCTTCACCCATTTGCTCAGGTATTGAGAA
TATGTAAGGATACAAATAGATGACTTGGAGTATGGATGCAATCAACGGGA
TGAGCCAGACTGACAGTAAAATCTGTTTAAAAAGTTTGTTAGTTATAATG
CTGTTATATTTCAAAGCTGACATGACTGATATGTAACGCTCAAATACGAA
AGCGCATAAATGTAAAGTTGCAACTTTGGTTAAACCAGAGGTGATGATGT
CTACCAGAATATTGAACACCAAACAGCTATGGCAATCAGGATCGTGCAAC
TCCTCCGATACTTCAATAATAATATGTAAGGCGACTGTAATAGATCGAAA
CCATTCACAAACGACCATGCTACACAGAATCTTGTTCGGGAAGTATAACA
ACAGAATTGGACATTTGTAGAACACAAGCATAATGAACATGGTTAGAACA
GCAATCAGAATCGCAATTATGGAATTGGTGATGATAGATAGTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054499-exon-scaffold_242-1491911889:1588941..1590071 | TCONS_00054499-exon-scaffold_242-1491911889:1588941..1590071 | Clytia hemisphaerica | exon |
| TCONS_00054499-exon-scaffold_242-1510915933:1588941..1590071 | TCONS_00054499-exon-scaffold_242-1510915933:1588941..1590071 | Clytia hemisphaerica | exon |
| TCONS_00054499-exon-scaffold_242-1575043694:1588941..1590071 | TCONS_00054499-exon-scaffold_242-1575043694:1588941..1590071 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1588941..1590071 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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