TCONS_00054493 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054493
Unique NameTCONS_00054493
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length978

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054493 ID=TCONS_00054493|Name=TCONS_00054493|organism=Clytia hemisphaerica|type=transcript|length=978bp
ATTCTCCATCCAACAAACTCCTTACTCCATTCTCCATGTAAAAAAATCCT
TACTCCATTCTCCATCTAACAAAATCCTTACTCCGTTTTTTATCCAATAA
ATTTCTTATTCcattttcatccaacaaaaTTATCACTCCATTCTCCATCC
AACAAACTCCTTACTCCATTCTCCATCTAACAAAATCCTTACTCCGTTTT
TTATCCAATAAATTTCTTATTCcattttcatccaacaaaaTCCTCACACA
ATTTTCCATTCAACAAAATCCTCACTCCCTTTTTCATCCAACAAAATTAT
CACTCCATTCTCCATCCAACAAAATCTTTACTCCATTCTTCATTTAACAA
AATCCTTACTCCATTCTTCATCCAACATAATCACCAATCCATTTTCCATC
CAACAAAATCTTTACTCCATTCTTCATTTAACAAAATCCTTACTCCATTC
TTCATCCAACATAATCACCAATCCATTTTCCATCCAACAAAATCTTTACT
CCATTCTCCATCCAACAAACTCCTTACTCCATTCTCCATGCAACAAAAGC
ATCACTTCATTCTCCATCCAACAAACTCCTTACTCCATTCTCCATCCAAC
AAACTCCTTACTCCATTCTCCATCCAACAAAAGCCTTACTCCATTCTCCA
TGCAAAAAAATCCTTACTTCATTCTCCATCCAACAAACTCCTTACTCCAT
TCTCCATCCAACAAAATCCTTACTCCATTCTCCATCCAACAAACTCCTTA
CTCCATTCTCCATCCAACAAACTCCTTACTCCATTCTCCATGCAAAAAAA
TCCTTACTCCATTCTCCATCCAACAAACTCCTTACTCCATTCTCCATGCA
ACAAAATCCTTACTCCATTCTCCATCCAACAAAATCTTTACTCCATTCTC
CATCCAACAAAATCCTTACTCTATTCTTCATCAAACAAAATCCTTACTCT
ATTCTTCATCCAACAAAATCCTTTCTCC
Run BLAST on NCBI

protein sequence of TCONS_00054493-protein

>TCONS_00054493-protein ID=TCONS_00054493-protein|Name=TCONS_00054493-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MQQKHHFILHPTNSLLHSPSNKLLTPFSIQQKPYSILHAKKSLLHSPSNK
LLTPFSIQQNPYSILHPTNSLLHSPSNKLLTPFSMQKNPYSILHPTNSLL
HSPCNKILTPFSIQQNLYSILHPTKSLLYSSSNKILTLFFIQQNPFS
Run BLAST on NCBI

transcript from alignment at scaffold_242:1349104..1350081

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054493 ID=TCONS_00054493|Name=TCONS_00054493|organism=Clytia hemisphaerica|type=transcript|length=978bp|location=Sequence derived from alignment at scaffold_242:1349104..1350081 (Clytia hemisphaerica)
GGAGAAAGGATTTTGTTGGATGAAGAATAGAGTAAGGATTTTGTTTGATG
AAGAATAGAGTAAGGATTTTGTTGGATGGAGAATGGAGTAAAGATTTTGT
TGGATGGAGAATGGAGTAAGGATTTTGTTGCATGGAGAATGGAGTAAGGA
GTTTGTTGGATGGAGAATGGAGTAAGGATTTTTTTGCATGGAGAATGGAG
TAAGGAGTTTGTTGGATGGAGAATGGAGTAAGGAGTTTGTTGGATGGAGA
ATGGAGTAAGGATTTTGTTGGATGGAGAATGGAGTAAGGAGTTTGTTGGA
TGGAGAATGAAGTAAGGATTTTTTTGCATGGAGAATGGAGTAAGGCTTTT
GTTGGATGGAGAATGGAGTAAGGAGTTTGTTGGATGGAGAATGGAGTAAG
GAGTTTGTTGGATGGAGAATGAAGTGATGCTTTTGTTGCATGGAGAATGG
AGTAAGGAGTTTGTTGGATGGAGAATGGAGTAAAGATTTTGTTGGATGGA
AAATGGATTGGTGATTATGTTGGATGAAGAATGGAGTAAGGATTTTGTTA
AATGAAGAATGGAGTAAAGATTTTGTTGGATGGAAAATGGATTGGTGATT
ATGTTGGATGAAGAATGGAGTAAGGATTTTGTTAAATGAAGAATGGAGTA
AAGATTTTGTTGGATGGAGAATGGAGTGATAATTTTGTTGGATGAAAAAG
GGAGTGAGGATTTTGTTGAATGGAAAATTGTGTGAGGAttttgttggatg
aaaatgGAATAAGAAATTTATTGGATAAAAAACGGAGTAAGGATTTTGTT
AGATGGAGAATGGAGTAAGGAGTTTGTTGGATGGAGAATGGAGTGATAAt
tttgttggatgaaaatgGAATAAGAAATTTATTGGATAAAAAACGGAGTA
AGGATTTTGTTAGATGGAGAATGGAGTAAGGATTTTTTTACATGGAGAAT
GGAGTAAGGAGTTTGTTGGATGGAGAAT

Coding sequence (CDS) from alignment at scaffold_242:1349104..1350081

>TCONS_00054493 ID=TCONS_00054493|Name=TCONS_00054493|organism=Clytia hemisphaerica|type=CDS|length=441bp|location=Sequence derived from alignment at scaffold_242:1349104..1350081 (Clytia hemisphaerica)
GGAGAAAGGATTTTGTTGGATGAAGAATAGAGTAAGGATTTTGTTTGATG
AAGAATAGAGTAAGGATTTTGTTGGATGGAGAATGGAGTAAAGATTTTGT
TGGATGGAGAATGGAGTAAGGATTTTGTTGCATGGAGAATGGAGTAAGGA
GTTTGTTGGATGGAGAATGGAGTAAGGATTTTTTTGCATGGAGAATGGAG
TAAGGAGTTTGTTGGATGGAGAATGGAGTAAGGAGTTTGTTGGATGGAGA
ATGGAGTAAGGATTTTGTTGGATGGAGAATGGAGTAAGGAGTTTGTTGGA
TGGAGAATGAAGTAAGGATTTTTTTGCATGGAGAATGGAGTAAGGCTTTT
GTTGGATGGAGAATGGAGTAAGGAGTTTGTTGGATGGAGAATGGAGTAAG
GAGTTTGTTGGATGGAGAATGAAGTGATGCTTTTGTTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034356XLOC_034356Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054493-exon-scaffold_242-1491911889:1349104..1350081TCONS_00054493-exon-scaffold_242-1491911889:1349104..1350081Clytia hemisphaericaexon
TCONS_00054493-exon-scaffold_242-1510915933:1349104..1350081TCONS_00054493-exon-scaffold_242-1510915933:1349104..1350081Clytia hemisphaericaexon
TCONS_00054493-exon-scaffold_242-1575043694:1349104..1350081TCONS_00054493-exon-scaffold_242-1575043694:1349104..1350081Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054493-proteinTCONS_00054493-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1349104..1350081 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.177941	0.277644	0.194385	0.288933	0.0467408	0.460884	0.0920486	0.57356	0	0	0	0.070996	0.539467	0.256597	0.401453	0.587444	0	0	0.099066	0.44207	0.0632601	0.0675129	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054493 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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