TCONS_00054492 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054492
Unique NameTCONS_00054492
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length599

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054492 ID=TCONS_00054492|Name=TCONS_00054492|organism=Clytia hemisphaerica|type=transcript|length=599bp
CAataaaataatccttattccaTTCTTCATCCAACAAAATCCTTATTCCT
TGAAGAAAATCTGGACGGAAATGCGGAATCTAGGTCCGCTGGCGGAGATG
GAAAATTTGGTCAGAATTGCGGAATTTGCCTATAGTCAAAATTTCCGGAA
TTTATGACAAAAACATTGCATTTACCAttaaaggagaaaaaaacatataa
atatCTGGTGAGTGTTGAatagtttgtttttgttggcaTCCGTCCCAACA
AATCATGGGTTGTTGTACTAACCATGAGGCGAAAGAACAGAAAagaatca
atgatgaaattgaaCGTCAATTGAGAAAAGACAAACGTGATCAACGAAGA
GAATTGAAACTTCTTCTCCTCGGTAAGAAACTGCATTACTTTTTAATTct
ttgattcgattgatattacATTCAAGTTCGCTCTTTCAAGTGTAAGcaaa
tcggattaaatttcacgTGTCAgagttttggaaaattttgcgtggtttta
atttcgcgaataagccttAAAACAGCTGAGAAGATGGCCATTTTTTGCCA
CGAATGGACAGTTTTGACTGGAaatgcaattttaaaatttttgtggtGG
Run BLAST on NCBI

transcript from alignment at scaffold_242:1348343..1348941

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054492 ID=TCONS_00054492|Name=TCONS_00054492|organism=Clytia hemisphaerica|type=transcript|length=599bp|location=Sequence derived from alignment at scaffold_242:1348343..1348941 (Clytia hemisphaerica)
CCaccacaaaaattttaaaattgcattTCCAGTCAAAACTGTCCATTCGT
GGCAAAAAATGGCCATCTTCTCAGCTGTTTTaaggcttattcgcgaaatt
aaaaccacgcaaaattttccaaaactcTGACAcgtgaaatttaatccgat
ttgCTTACACTTGAAAGAGCGAACTTGAATgtaatatcaatcgaatcaaa
gAATTAAAAAGTAATGCAGTTTCTTACCGAGGAGAAGAAGTTTCAATTCT
CTTCGTTGATCACGTTTGTCTTTTCTCAATTGACGttcaatttcatcatt
gattctTTTCTGTTCTTTCGCCTCATGGTTAGTACAACAACCCATGATTT
GTTGGGACGGAtgccaacaaaaacaaactatTCAACACTCACCAGatatt
tatatgtttttttctcctttaaTGGTAAATGCAATGTTTTTGTCATAAAT
TCCGGAAATTTTGACTATAGGCAAATTCCGCAATTCTGACCAAATTTTCC
ATCTCCGCCAGCGGACCTAGATTCCGCATTTCCGTCCAGATTTTCTTCAA
GGAATAAGGATTTTGTTGGATGAAGAAtggaataaggattattttatTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034355XLOC_034355Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054492-exon-scaffold_242-1491911889:1348343..1348941TCONS_00054492-exon-scaffold_242-1491911889:1348343..1348941Clytia hemisphaericaexon
TCONS_00054492-exon-scaffold_242-1510915933:1348343..1348941TCONS_00054492-exon-scaffold_242-1510915933:1348343..1348941Clytia hemisphaericaexon
TCONS_00054492-exon-scaffold_242-1575043694:1348343..1348941TCONS_00054492-exon-scaffold_242-1575043694:1348343..1348941Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1348343..1348941 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	5.02904	4.27016	4.52279	3.98801	1.10596	3.69566	3.99302	4.20962	0.723169	0.443469	5.80463	3.28976	6.67241	8.39887	5.01335	6.1777	1.66884	3.31892	2.63706	3.39952	0.249472	0.266243	0	0.10287
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054492 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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