TCONS_00054481 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054481
Unique NameTCONS_00054481
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length633

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054481 ID=TCONS_00054481|Name=TCONS_00054481|organism=Clytia hemisphaerica|type=transcript|length=633bp
CCTTTCGGTAGAACATTTCCACTCAACTACACACACACAAAACAAGTGCT
TATGAGCCAGCTACAGTACTCGCGTGAATGTTATGAGGCCCGTGAAAGAA
TCTCTTAAACGTTTGTACCCATGGTTGGCTCACTATTTTACCAGCAGGAA
AGGTAGCTGGTATGACCGAAAAGTTCGATAAACTTCAAAGAACTTTCTCG
TGTTTTACCACGAAAAAACGATCAAGTTACCCCAATCTCCAAAACCGACG
AAAAGAAACTACGAGTCTGGGCAAACAGATATACTCGTGCCGTACGTCAA
CGCACAGTCCGCCAAGAGACAGCTATGGCTAAGACGGGTACACTTCCCCA
TATTTGTATTCGACCAAAATTAGTGAAATTGCAGATACCACTGAACTCAA
ATCTAGATGATATTAGTGACAAAGATAAAATGAACCTGAGAAGGAACCta
caaattttgacaaagacAAAGATGAGAAGGAACACGAAGATACTTACGAT
CTTGAGAAGTGATCAGTGAAGCTGAGGACGGTCAcaacccggggggggta
ctacccttgtcgaccgacgggggtgctccgctgaggttcgaaaaatggac
cctacgtgggactcgaaatttgcgaaaaaagtg
Run BLAST on NCBI

transcript from alignment at scaffold_242:1154563..1155195

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054481 ID=TCONS_00054481|Name=TCONS_00054481|organism=Clytia hemisphaerica|type=transcript|length=633bp|location=Sequence derived from alignment at scaffold_242:1154563..1155195 (Clytia hemisphaerica)
cacttttttcgcaaatttcgagtcccacgtagggtccatttttcgaacct
cagcggagcacccccgtcggtcgacaagggtagtaccccccccgggttgT
GACCGTCCTCAGCTTCACTGATCACTTCTCAAGATCGTAAGTATCTTCGT
GTTCCTTCTCATCTTTgtctttgtcaaaatttgtaGGTTCCTTCTCAGGT
TCATTTTATCTTTGTCACTAATATCATCTAGATTTGAGTTCAGTGGTATC
TGCAATTTCACTAATTTTGGTCGAATACAAATATGGGGAAGTGTACCCGT
CTTAGCCATAGCTGTCTCTTGGCGGACTGTGCGTTGACGTACGGCACGAG
TATATCTGTTTGCCCAGACTCGTAGTTTCTTTTCGTCGGTTTTGGAGATT
GGGGTAACTTGATCGTTTTTTCGTGGTAAAACACGAGAAAGTTCTTTGAA
GTTTATCGAACTTTTCGGTCATACCAGCTACCTTTCCTGCTGGTAAAATA
GTGAGCCAACCATGGGTACAAACGTTTAAGAGATTCTTTCACGGGCCTCA
TAACATTCACGCGAGTACTGTAGCTGGCTCATAAGCACTTGTTTTGTGTG
TGTGTAGTTGAGTGGAAATGTTCTACCGAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034344XLOC_034344Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054481-exon-scaffold_242-1491911889:1154563..1155195TCONS_00054481-exon-scaffold_242-1491911889:1154563..1155195Clytia hemisphaericaexon
TCONS_00054481-exon-scaffold_242-1510915933:1154563..1155195TCONS_00054481-exon-scaffold_242-1510915933:1154563..1155195Clytia hemisphaericaexon
TCONS_00054481-exon-scaffold_242-1575043694:1154563..1155195TCONS_00054481-exon-scaffold_242-1575043694:1154563..1155195Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1154563..1155195 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.114056	0.120264	0.429532	0.301739	0.504895	0.695241	0.488749	0.704884	0.292554	0.602154	0.127153	0.44568	1.16351	0.523628	0.367093	0.13836	0.218888	0.978011	1.3048	0.585509	0.261257	0.195095	0	0.157978	0	0.503535	0.614016	0.464315	0.207793	0.160757
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054481 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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