|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054472 ID=TCONS_00054472|Name=TCONS_00054472|organism=Clytia hemisphaerica|type=transcript|length=988bp
GACGACTTTTAAAAGCAGTGAAAGCATCGAGTAGTCTATTAATCTTACAA
AATTTTAAGATGAAAGGCATGGTCTCTTGTACAATTATTTGACCTAAATA
TAATTATATGTAGTGATAAAGCATAAGATTGTATAGAATACTAACAAATC
AGGTAGGTACCCAATAGTGTCCTTTCATATTTTTAAGATAATTGAAAATA
TCGTTCTTTCTTATGATCAAGAAAGTTGTATTTTAAAAGTGAGAAGAACA
AAACAGCTTTATCACTGAAATTTGATTCTACGTCGTACTTGTTGATCTTG
TTGAAGTTGACTTCTGTGCCGACATGTCGGTAACCCATTATCCGGAATGG
AAGGATCGGGATCTTGTCGTATCGAAAGGTGATTCGGTAGTTTACACCTT
TGATCAGATTATTAGCATAGTTTGCATATGCTTGATTTCCTGGTCTTGGA
GCACCAAACGTCATCAAGTTAGCTTGGATTCCTCTCTTGTACAAATCGAC
TGTTAGGAAGACGGCTTGAGCACCGCCTAGTGAGTGACCAGTAACGTAAA
CTTCAGCCGAAGGATgaactttacgaaaattttCGACTGTTTGAAGGACG
AAGCTCCGCGCTGATCTATATGTTGCCAGAAACCCTTTGTGAACCTTGCA
CCCGTTGCAATCTCCAGACGGAACGAGTGCCATTTTGAGGTTATTGACCC
AATTCATAAAAGTGTAACTTCCGCGAAAAGCGACTACGATAGCATTTCGT
GCGGGATCATACTCAACGTAACCATGTGATTTGAGGTTTGTATCAAACCA
TTTGATGTTGGCCGTGTTTGTATGTGGTCGGTCATAAATATCTTCCAAAT
AATGCTGTATAACGTGGAACTGGCCCCTGTTGAACGGCGCAATCGCTTCG
GTGAGCAAAACACATGCCACTAGGCACAATAGTTTCAACATCCTTGAATG
GAATTTGTTTTACTGACTCCAAGCCTTTTAGTTAAGTG Run BLAST on NCBI protein sequence of TCONS_00054472-protein >TCONS_00054472-protein ID=TCONS_00054472-protein|Name=TCONS_00054472-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
MLKLLCLVACVLLTEAIAPFNRGQFHVIQHYLEDIYDRPHTNTANIKWFD
TNLKSHGYVEYDPARNAIVVAFRGSYTFMNWVNNLKMALVPSGDCNGCKV
HKGFLATYRSARSFVLQTVENFRKVHPSAEVYVTGHSLGGAQAVFLTVDL
YKRGIQANLMTFGAPRPGNQAYANYANNLIKGVNYRITFRYDKIPILPFR
IMGYRHVGTEVNFNKINKYDVESNFSDKAVLFFSLLKYNFLDHKKERYFQ
LS Run BLAST on NCBI transcript from alignment at scaffold_242:1026342..1027329 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054472 ID=TCONS_00054472|Name=TCONS_00054472|organism=Clytia hemisphaerica|type=transcript|length=988bp|location=Sequence derived from alignment at scaffold_242:1026342..1027329 (Clytia hemisphaerica)
CACTTAACTAAAAGGCTTGGAGTCAGTAAAACAAATTCCATTCAAGGATG
TTGAAACTATTGTGCCTAGTGGCATGTGTTTTGCTCACCGAAGCGATTGC
GCCGTTCAACAGGGGCCAGTTCCACGTTATACAGCATTATTTGGAAGATA
TTTATGACCGACCACATACAAACACGGCCAACATCAAATGGTTTGATACA
AACCTCAAATCACATGGTTACGTTGAGTATGATCCCGCACGAAATGCTAT
CGTAGTCGCTTTTCGCGGAAGTTACACTTTTATGAATTGGGTCAATAACC
TCAAAATGGCACTCGTTCCGTCTGGAGATTGCAACGGGTGCAAGGTTCAC
AAAGGGTTTCTGGCAACATATAGATCAGCGCGGAGCTTCGTCCTTCAAAC
AGTCGaaaattttcgtaaagttcATCCTTCGGCTGAAGTTTACGTTACTG
GTCACTCACTAGGCGGTGCTCAAGCCGTCTTCCTAACAGTCGATTTGTAC
AAGAGAGGAATCCAAGCTAACTTGATGACGTTTGGTGCTCCAAGACCAGG
AAATCAAGCATATGCAAACTATGCTAATAATCTGATCAAAGGTGTAAACT
ACCGAATCACCTTTCGATACGACAAGATCCCGATCCTTCCATTCCGGATA
ATGGGTTACCGACATGTCGGCACAGAAGTCAACTTCAACAAGATCAACAA
GTACGACGTAGAATCAAATTTCAGTGATAAAGCTGTTTTGTTCTTCTCAC
TTTTAAAATACAACTTTCTTGATCATAAGAAAGAACGATATTTTCAATTA
TCTTAAAAATATGAAAGGACACTATTGGGTACCTACCTGATTTGTTAGTA
TTCTATACAATCTTATGCTTTATCACTACATATAATTATATTTAGGTCAA
ATAATTGTACAAGAGACCATGCCTTTCATCTTAAAATTTTGTAAGATTAA
TAGACTACTCGATGCTTTCACTGCTTTTAAAAGTCGTC Coding sequence (CDS) from alignment at scaffold_242:1026342..1027329 >TCONS_00054472 ID=TCONS_00054472|Name=TCONS_00054472|organism=Clytia hemisphaerica|type=CDS|length=759bp|location=Sequence derived from alignment at scaffold_242:1026342..1027329 (Clytia hemisphaerica)
ATGTTGAAACTATTGTGCCTAGTGGCATGTGTTTTGCTCACCGAAGCGAT
TGCGCCGTTCAACAGGGGCCAGTTCCACGTTATACAGCATTATTTGGAAG
ATATTTATGACCGACCACATACAAACACGGCCAACATCAAATGGTTTGAT
ACAAACCTCAAATCACATGGTTACGTTGAGTATGATCCCGCACGAAATGC
TATCGTAGTCGCTTTTCGCGGAAGTTACACTTTTATGAATTGGGTCAATA
ACCTCAAAATGGCACTCGTTCCGTCTGGAGATTGCAACGGGTGCAAGGTT
CACAAAGGGTTTCTGGCAACATATAGATCAGCGCGGAGCTTCGTCCTTCA
AACAGTCGaaaattttcgtaaagttcATCCTTCGGCTGAAGTTTACGTTA
CTGGTCACTCACTAGGCGGTGCTCAAGCCGTCTTCCTAACAGTCGATTTG
TACAAGAGAGGAATCCAAGCTAACTTGATGACGTTTGGTGCTCCAAGACC
AGGAAATCAAGCATATGCAAACTATGCTAATAATCTGATCAAAGGTGTAA
ACTACCGAATCACCTTTCGATACGACAAGATCCCGATCCTTCCATTCCGG
ATAATGGGTTACCGACATGTCGGCACAGAAGTCAACTTCAACAAGATCAA
CAAGTACGACGTAGAATCAAATTTCAGTGATAAAGCTGTTTTGTTCTTCT
CACTTTTAAAATACAACTTTCTTGATCATAAGAAAGAACGATATTTTCAA
TTATCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054472-exon-scaffold_242-1491911889:1026342..1027329 | TCONS_00054472-exon-scaffold_242-1491911889:1026342..1027329 | Clytia hemisphaerica | exon |
| TCONS_00054472-exon-scaffold_242-1510915933:1026342..1027329 | TCONS_00054472-exon-scaffold_242-1510915933:1026342..1027329 | Clytia hemisphaerica | exon |
| TCONS_00054472-exon-scaffold_242-1575043694:1026342..1027329 | TCONS_00054472-exon-scaffold_242-1575043694:1026342..1027329 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1026342..1027329 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006629 | lipid metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006629 |
lipid metabolic process |
Blast
The following BLAST results are available for this feature:
|
