TCONS_00054466 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054466
Unique NameTCONS_00054466
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054466 ID=TCONS_00054466|Name=TCONS_00054466|organism=Clytia hemisphaerica|type=transcript|length=407bp
ACTAGGGAAATTAGCATTCTTCAGTGATTATAATGGAAGTCAAATATGAA
AAGTACCAAAGCCTGCAAAAATTGCAATATAGCAaacgcaaaaaaattga
aaaaaaaaaagaaaaatgaaaaaggccTCTATAATTTTGTCTATTTCATT
AAATTACtttgagtgcaacgactgcctcgttttgaaactatAACCAAGAG
GATTATACCCTTTGAGACTTCCGGCTATTACATTTTAAATAGATGGAACT
TCTAATGGACTCCTCTTGGAAtaaattaccatagcaatattttgaaaacg
aggtaagcgttgctaTTATGACGTAATTTATGGAAAGGTCTATTTAGGGT
TGGATTTCAAAACTTTCAGATCCTAAACAATATCTTAAAAAGTGGTAGCA
TTCTTGT
Run BLAST on NCBI

transcript from alignment at scaffold_242:832826..833232

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054466 ID=TCONS_00054466|Name=TCONS_00054466|organism=Clytia hemisphaerica|type=transcript|length=407bp|location=Sequence derived from alignment at scaffold_242:832826..833232 (Clytia hemisphaerica)
ACAAGAATGCTACCACTTTTTAAGATATTGTTTAGGATCTGAAAGTTTTG
AAATCCAACCCTAAATAGACCTTTCCATAAATTACGTCATAAtagcaacg
cttacctcgttttcaaaatattgctatggtaatttaTTCCAAGAGGAGTC
CATTAGAAGTTCCATCTATTTAAAATGTAATAGCCGGAAGTCTCAAAGGG
TATAATCCTCTTGGTTatagtttcaaaacgaggcagtcgttgcactcaaa
GTAATTTAATGAAATAGACAAAATTATAGAggcctttttcatttttcttt
ttttttttcaatttttttgcgttTGCTATATTGCAATTTTTGCAGGCTTT
GGTACTTTTCATATTTGACTTCCATTATAATCACTGAAGAATGCTAATTT
CCCTAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034330XLOC_034330Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054466-exon-scaffold_242-1491911889:832826..833232TCONS_00054466-exon-scaffold_242-1491911889:832826..833232Clytia hemisphaericaexon
TCONS_00054466-exon-scaffold_242-1510915933:832826..833232TCONS_00054466-exon-scaffold_242-1510915933:832826..833232Clytia hemisphaericaexon
TCONS_00054466-exon-scaffold_242-1575043694:832826..833232TCONS_00054466-exon-scaffold_242-1575043694:832826..833232Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:832826..833232 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.895903	0.698917	0.612859	1.58787	5.9183	3.62792	2.76438	4.09763	1.67304	0.752973	2.35994	1.074	0	0	0.101745	0.218375	0	0.827211	0	0.199316	0.346484	0.760512	0.206432	0.373558	0.769513	1.03016	1.47415	1.86906	0.397753	0.612009
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054466 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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