TCONS_00054457 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054457
Unique NameTCONS_00054457
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054457 ID=TCONS_00054457|Name=TCONS_00054457|organism=Clytia hemisphaerica|type=transcript|length=465bp
CAGTTTTAGATAAGTTATTTGAAGAGCTGCTAATTTTGGGAGAAAGTCTC
CCTTcactatatattttgaaaatgttgtaaGTAAAAGTTAAGAGCCAAAA
CAGGATCAGAGTTTTGTTGTCACATATTCTAATTATCAACGCAATATCAC
AGGAAATGTATTCTTTTGTTGATAAATTTCACTGTTAAGTGCAATTCTTT
TATGGATAACTTTTATTGCAACATTATCTGAATTATCTTAATTCCTACAT
ATTCTGACACaaatctgaaaattgaaaataactgGTTATCCACTTTATAA
AGCTTTATCCTCCAAGAGACCAAAAAAACCTAAGAAAAAAGTATTATAGC
TTGGATTTCACATATTGAGGGGTACCCAAGGCCACCAGCATCAATGATGA
TGTTTTGTTAAGGGGTGAAAATCGGTGAAAATCACTCTCATAAAAAGCTT
CCCACTTAACAAACT
Run BLAST on NCBI

transcript from alignment at scaffold_242:545240..545704

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054457 ID=TCONS_00054457|Name=TCONS_00054457|organism=Clytia hemisphaerica|type=transcript|length=465bp|location=Sequence derived from alignment at scaffold_242:545240..545704 (Clytia hemisphaerica)
AGTTTGTTAAGTGGGAAGCTTTTTATGAGAGTGATTTTCACCGATTTTCA
CCCCTTAACAAAACATCATCATTGATGCTGGTGGCCTTGGGTACCCCTCA
ATATGTGAAATCCAAGCTATAATACTTTTTTCTTAGGTTTTTTTGGTCTC
TTGGAGGATAAAGCTTTATAAAGTGGATAACcagttattttcaattttca
gatttGTGTCAGAATATGTAGGAATTAAGATAATTCAGATAATGTTGCAA
TAAAAGTTATCCATAAAAGAATTGCACTTAACAGTGAAATTTATCAACAA
AAGAATACATTTCCTGTGATATTGCGTTGATAATTAGAATATGTGACAAC
AAAACTCTGATCCTGTTTTGGCTCTTAACTTTTACttacaacattttcaa
aatatatagtgAAGGGAGACTTTCTCCCAAAATTAGCAGCTCTTCAAATA
ACTTATCTAAAACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034321XLOC_034321Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054457-exon-scaffold_242-1491911889:545240..545704TCONS_00054457-exon-scaffold_242-1491911889:545240..545704Clytia hemisphaericaexon
TCONS_00054457-exon-scaffold_242-1510915933:545240..545704TCONS_00054457-exon-scaffold_242-1510915933:545240..545704Clytia hemisphaericaexon
TCONS_00054457-exon-scaffold_242-1575043694:545240..545704TCONS_00054457-exon-scaffold_242-1575043694:545240..545704Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:545240..545704 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.138585	0.135142	0	0.153515	0	0.295365	0.178173	0.333606	0.233566	0.289309	0	0.553781	0.0921685	0.0957179	0.314772	0	0	0	0.294638	0.462476	1.07193	1.17642	0	0	0	0.132794	0.76011	0.81121	0.461455	0.47015
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054457 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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