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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054454 ID=TCONS_00054454|Name=TCONS_00054454|organism=Clytia hemisphaerica|type=transcript|length=1666bp
ATTAGAGGTATTTTTTGAGGtgagttttattttgaaagtagAAAGAGATT
TGTCGGATAGGAAGGTTTGAGTTTTCCTCGAATTCGTTTGTTGAATTTGC
ATCAAAATGGAAAACAATCTACAACATGTTGTCATCAAAAACATTGTAGA
TGATATGAGAGAGCATAATGCGCACGGCGAAAGAAGATTGGACGAACACA
ACGCACATGGTGTGCGAGAGGATGATAATCACCAAGCTATTGCTGTACCA
CAAGTAAAAGGAAACGGTGGTGGACATGCGCAGGAGAGATTGAGATTACT
GAAGGAAGAACTTGAGAAGACGAGGAGAGAAAATGAGCTTGAGAAATTAA
AATTCGAAAAGGACCAACTCaaaagtgagaaagaaaatgaagGCTTGAAG
GCTACTGTAGACAAAATGAAACTTGAAAatgaacaattaaaaaacaattt
tgagaTGGAGAAACTGAGAGCTGAAGTTGCTATgttgaaaactgaaaaac
aaTTTGGTTTGGATAAGAAAATAGTCTTAGATCAAAACTTAAAGCTTGAA
GAAGAGTTGAAAGCTGTCAAGATCGAAAAGGAAAAAGTTGTGGAAGACAA
TAAATATTTGAGGGTCGAGTTATTGAGATTGAAGAACGAAAAGCAAGGGC
TTGAACAGCAAAACAAAAACCTTAAAGAACAATCAGATAAATTACAACTC
GAGAAAGCTGTCATGGACGGAAAACACCAAACATTACAAAACGATAATCA
AAAGATTGAAAACCAGATAAGAACGTCGCAATTAGAAACAGCAATATtat
taaaagattttgaaaaattaagtaCAGAATTAAAAgacgaaaaagaaaac
aagaaaatgcTACAAGGAAAATTGAACGATCTCCAGGAAGCATATGATAG
GCTACAAGAAAAGGGCagacaaaataataaaaacgaTAACGAACAGACTG
TTCTTGTACCTGTGAAGGATAAAGTATTAGAAGAAATCGACTTCAGTCAC
ATGGCTACACAAGAAGTATTATATCATGGTTTATCCATGTTTCTCGAATC
CAAATTTTGTTCGAACTATGCGAAATGGTATAATGCTATGCAATTAAAGA
TCGCTCCTGGTAAAATTGTTTGTTCGGGGAATAATTtgatcattaaaaaa
gaaagttcACCGTTTCTACGTAAGTTAGGGATTGGCAGTAAAATTGCCAT
TGGTAATTACGTCCACGACAGTAGGGAATGGAGCTACGAAAAATTGACAT
CTAGAAAGTTACTTCATCCAAAGGATAATACAAGACCAATAAGCGTGGAA
TATCATAGGGGAGAAAATGTATGGCTGCTTGATCATTCCCCAGGTGAAGA
GTATATTTTCAAAGATGTTATTTGCAGTTACCTTATCTTCGTTAcgaaaa
cataaaatactttaggcgtacaaattttcgtgagcagaaactttcgcggt
tatcgtgaattttggcctttttcgcgaacGTAAATATTATTGAAAATCCT
TAACatggcaattcgcgaaagtttatgctcacgaaatattctcaaaaaaa
ttggaaatctatatgtaaaacctcgaaatcgtaataaaCATCAAATTTTC
GGTATATTATCATCCTATAATGCCTTTAACCGTCTTTAGAGGTtgtaata
tttttcacttttaaga Run BLAST on NCBI protein sequence of TCONS_00054454-protein >TCONS_00054454-protein ID=TCONS_00054454-protein|Name=TCONS_00054454-protein|organism=Clytia hemisphaerica|type=polypeptide|length=432bp
MENNLQHVVIKNIVDDMREHNAHGERRLDEHNAHGVREDDNHQAIAVPQV
KGNGGGHAQERLRLLKEELEKTRRENELEKLKFEKDQLKSEKENEGLKAT
VDKMKLENEQLKNNFEMEKLRAEVAMLKTEKQFGLDKKIVLDQNLKLEEE
LKAVKIEKEKVVEDNKYLRVELLRLKNEKQGLEQQNKNLKEQSDKLQLEK
AVMDGKHQTLQNDNQKIENQIRTSQLETAILLKDFEKLSTELKDEKENKK
MLQGKLNDLQEAYDRLQEKGRQNNKNDNEQTVLVPVKDKVLEEIDFSHMA
TQEVLYHGLSMFLESKFCSNYAKWYNAMQLKIAPGKIVCSGNNLIIKKES
SPFLRKLGIGSKIAIGNYVHDSREWSYEKLTSRKLLHPKDNTRPISVEYH
RGENVWLLDHSPGEEYIFKDVICSYLIFVTKT Run BLAST on NCBI transcript from alignment at scaffold_242:531328..532993 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054454 ID=TCONS_00054454|Name=TCONS_00054454|organism=Clytia hemisphaerica|type=transcript|length=1666bp|location=Sequence derived from alignment at scaffold_242:531328..532993 (Clytia hemisphaerica)
tcttaaaagtgaaaaatattacaACCTCTAAAGACGGTTAAAGGCATTAT
AGGATGATAATATACCGAAAATTTGATGtttattacgatttcgaggtttt
acatatagatttccaatttttttgagaatatttcgtgagcataaactttc
gcgaattgccatGTTAAGGATTTTCAATAATATTTACgttcgcgaaaaag
gccaaaattcacgataaccgcgaaagtttctgctcacgaaaatttgtacg
cctaaagtattttatgttttcgTAACGAAGATAAGGTAACTGCAAATAAC
ATCTTTGAAAATATACTCTTCACCTGGGGAATGATCAAGCAGCCATACAT
TTTCTCCCCTATGATATTCCACGCTTATTGGTCTTGTATTATCCTTTGGA
TGAAGTAACTTTCTAGATGTCAATTTTTCGTAGCTCCATTCCCTACTGTC
GTGGACGTAATTACCAATGGCAATTTTACTGCCAATCCCTAACTTACGTA
GAAACGGTgaactttcttttttaatgatcaAATTATTCCCCGAACAAACA
ATTTTACCAGGAGCGATCTTTAATTGCATAGCATTATACCATTTCGCATA
GTTCGAACAAAATTTGGATTCGAGAAACATGGATAAACCATGATATAATA
CTTCTTGTGTAGCCATGTGACTGAAGTCGATTTCTTCTAATACTTTATCC
TTCACAGGTACAAGAACAGTCTGTTCGTTAtcgtttttattattttgtct
GCCCTTTTCTTGTAGCCTATCATATGCTTCCTGGAGATCGTTCAATTTTC
CTTGTAgcattttcttgttttctttttcgtcTTTTAATTCTGtacttaat
ttttcaaaatcttttaataATATTGCTGTTTCTAATTGCGACGTTCTTAT
CTGGTTTTCAATCTTTTGATTATCGTTTTGTAATGTTTGGTGTTTTCCGT
CCATGACAGCTTTCTCGAGTTGTAATTTATCTGATTGTTCTTTAAGGTTT
TTGTTTTGCTGTTCAAGCCCTTGCTTTTCGTTCTTCAATCTCAATAACTC
GACCCTCAAATATTTATTGTCTTCCACAACTTTTTCCTTTTCGATCTTGA
CAGCTTTCAACTCTTCTTCAAGCTTTAAGTTTTGATCTAAGACTATTTTC
TTATCCAAACCAAAttgtttttcagttttcaacATAGCAACTTCAGCTCT
CAGTTTCTCCAtctcaaaattgttttttaattgttcatTTTCAAGTTTCA
TTTTGTCTACAGTAGCCTTCAAGCcttcattttctttctcacttttGAGT
TGGTCCTTTTCGAATTTTAATTTCTCAAGCTCATTTTCTCTCCTCGTCTT
CTCAAGTTCTTCCTTCAGTAATCTCAATCTCTCCTGCGCATGTCCACCAC
CGTTTCCTTTTACTTGTGGTACAGCAATAGCTTGGTGATTATCATCCTCT
CGCACACCATGTGCGTTGTGTTCGTCCAATCTTCTTTCGCCGTGCGCATT
ATGCTCTCTCATATCATCTACAATGTTTTTGATGACAACATGTTGTAGAT
TGTTTTCCATTTTGATGCAAATTCAACAAACGAATTCGAGGAAAACTCAA
ACCTTCCTATCCGACAAATCTCTTTctactttcaaaataaaactcaCCTC
AAAAAATACCTCTAAT Coding sequence (CDS) from alignment at scaffold_242:531328..532993 >TCONS_00054454 ID=TCONS_00054454|Name=TCONS_00054454|organism=Clytia hemisphaerica|type=CDS|length=1299bp|location=Sequence derived from alignment at scaffold_242:531328..532993 (Clytia hemisphaerica)
ttatgttttcgTAACGAAGATAAGGTAACTGCAAATAACATCTTTGAAAA
TATACTCTTCACCTGGGGAATGATCAAGCAGCCATACATTTTCTCCCCTA
TGATATTCCACGCTTATTGGTCTTGTATTATCCTTTGGATGAAGTAACTT
TCTAGATGTCAATTTTTCGTAGCTCCATTCCCTACTGTCGTGGACGTAAT
TACCAATGGCAATTTTACTGCCAATCCCTAACTTACGTAGAAACGGTgaa
ctttcttttttaatgatcaAATTATTCCCCGAACAAACAATTTTACCAGG
AGCGATCTTTAATTGCATAGCATTATACCATTTCGCATAGTTCGAACAAA
ATTTGGATTCGAGAAACATGGATAAACCATGATATAATACTTCTTGTGTA
GCCATGTGACTGAAGTCGATTTCTTCTAATACTTTATCCTTCACAGGTAC
AAGAACAGTCTGTTCGTTAtcgtttttattattttgtctGCCCTTTTCTT
GTAGCCTATCATATGCTTCCTGGAGATCGTTCAATTTTCCTTGTAgcatt
ttcttgttttctttttcgtcTTTTAATTCTGtacttaatttttcaaaatc
ttttaataATATTGCTGTTTCTAATTGCGACGTTCTTATCTGGTTTTCAA
TCTTTTGATTATCGTTTTGTAATGTTTGGTGTTTTCCGTCCATGACAGCT
TTCTCGAGTTGTAATTTATCTGATTGTTCTTTAAGGTTTTTGTTTTGCTG
TTCAAGCCCTTGCTTTTCGTTCTTCAATCTCAATAACTCGACCCTCAAAT
ATTTATTGTCTTCCACAACTTTTTCCTTTTCGATCTTGACAGCTTTCAAC
TCTTCTTCAAGCTTTAAGTTTTGATCTAAGACTATTTTCTTATCCAAACC
AAAttgtttttcagttttcaacATAGCAACTTCAGCTCTCAGTTTCTCCA
tctcaaaattgttttttaattgttcatTTTCAAGTTTCATTTTGTCTACA
GTAGCCTTCAAGCcttcattttctttctcacttttGAGTTGGTCCTTTTC
GAATTTTAATTTCTCAAGCTCATTTTCTCTCCTCGTCTTCTCAAGTTCTT
CCTTCAGTAATCTCAATCTCTCCTGCGCATGTCCACCACCGTTTCCTTTT
ACTTGTGGTACAGCAATAGCTTGGTGATTATCATCCTCTCGCACACCATG
TGCGTTGTGTTCGTCCAATCTTCTTTCGCCGTGCGCATTATGCTCTCTCA
TATCATCTACAATGTTTTTGATGACAACATGTTGTAGATTGTTTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054454-exon-scaffold_242-1491911889:531328..532993 | TCONS_00054454-exon-scaffold_242-1491911889:531328..532993 | Clytia hemisphaerica | exon |
| TCONS_00054454-exon-scaffold_242-1510915933:531328..532993 | TCONS_00054454-exon-scaffold_242-1510915933:531328..532993 | Clytia hemisphaerica | exon |
| TCONS_00054454-exon-scaffold_242-1575043694:531328..532993 | TCONS_00054454-exon-scaffold_242-1575043694:531328..532993 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:531328..532993 . |
Blast
The following BLAST results are available for this feature:
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