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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054435 ID=TCONS_00054435|Name=TCONS_00054435|organism=Clytia hemisphaerica|type=transcript|length=1448bp
AAGAAAGTTTCTTGGTTTAATGAAGGGTCGACAAAGAAGgTTGCAAATAA
TCAGTCACCATGTTGTCCTTCATTCCTCATCAAAACAACTTCCTCGCCTC
GATGTCCTTCTTACAACATGCTTTAAGCTTGCCTCGGCTACCATTCAACA
TGTTCAACGACCCTGGGTTGCTACATTTCAGCATCATTGCTACCATAGCA
ACAATCGCCATTATGGCAAACATTTACCTCGTCACTTACATCATGCGAAC
TAAAACGACGCGCATCTGCAAAAACTCTTGTTATGGATATTACCTGCTAC
ACATCTCTTTTTTGGATATCTTAGCATCAACTTTAGCGATTCTGTTATCC
ATAAATACACACGCGGCGGTGAAACCATCTAGCTCATCAATGAGTTGGAT
TTCTGTGAATGGACATTATTTGAACCATATTTTTTGTGGTGTTGTCCACA
GTACTATTGCATTGATGCTTTACCAGAAATTCCTCTGTTTACGTAAATCT
TCACATAAACGAAAAGCATTCTTTAATTTGAAGCTGAGCTTATCCTTGAC
GTGGTGCTGGGCGGTCGGAAGCGTACTCCCAGAGATCATTGTATATAAAA
ATGCAATCGAGGAAGAAGATAGAGAAAACAGTTCATGTTTGATCGTtata
attgttttgttaattatCGTTCCGTTGTTAATGATCGGTTATTATCGAAT
CAGTATTCTTCGATTACGAAGGAGTGAAAGCGTTTTATTATTGAAACGGA
GTCGTGAATACCGCAAATTTGCTTCCGTTTGCTTACTTTTATCGATAGCC
CTGGTGGCTTGTAATCTACCCAAGTATTTATATCATCTTTTACAAATCAT
GAATAAGGAAGGGAAAATTGATttctcattttctgaaaaactgcAGACAA
TCTTTGATACGATTTCCTGGCTTTATTTACCAGTTATACCGCTTATTTAC
TGTCTAACTTACCGGATTTATAAACGCAAACCCAAGTTACCAGACCTGAC
CAATAGtaataacaacaataacaacatCAGCGCACTGCTTGAATCCAAAT
TCCTTTCCATGGCGGCCACTCCAACACCGACCTCATTAACGACGTCGCGG
AGCCAATCGGTACCGAATTTCGAACCTAGGAGACGCTCCTTGTTTGATAG
ACGTAAGAGTAATAGTAGTGTTGAGGATATCTTGGATATTTGTTCGCGAA
GATTTTCAGCACCGAATGTGGAAGTGAACCCCGAGCTTCTCTCATCCTGC
ATGTTGACTTTAGAATCTATCTATGAGGCGAACAGGAAAAAGAAATCACT
TTTCAGACAAGCATTGAGACGGTTCAGTGGGAATCCGACTGATAGtgtcg
atgacgtcagcatgatGTCATCACAAGATTCGATCCCATTCCCCCATGTT
GTACATCGGTTGAATCAAGGCGGACAAAGTCCTTTGAAAGAGGATTGA Run BLAST on NCBI protein sequence of TCONS_00054435-protein >TCONS_00054435-protein ID=TCONS_00054435-protein|Name=TCONS_00054435-protein|organism=Clytia hemisphaerica|type=polypeptide|length=462bp
MLSFIPHQNNFLASMSFLQHALSLPRLPFNMFNDPGLLHFSIIATIATIA
IMANIYLVTYIMRTKTTRICKNSCYGYYLLHISFLDILASTLAILLSINT
HAAVKPSSSSMSWISVNGHYLNHIFCGVVHSTIALMLYQKFLCLRKSSHK
RKAFFNLKLSLSLTWCWAVGSVLPEIIVYKNAIEEEDRENSSCLIVIIVL
LIIVPLLMIGYYRISILRLRRSESVLLLKRSREYRKFASVCLLLSIALVA
CNLPKYLYHLLQIMNKEGKIDFSFSEKLQTIFDTISWLYLPVIPLIYCLT
YRIYKRKPKLPDLTNSNNNNNNISALLESKFLSMAATPTPTSLTTSRSQS
VPNFEPRRRSLFDRRKSNSSVEDILDICSRRFSAPNVEVNPELLSSCMLT
LESIYEANRKKKSLFRQALRRFSGNPTDSVDDVSMMSSQDSIPFPHVVHR
LNQGGQSPLKED Run BLAST on NCBI transcript from alignment at scaffold_242:1759360..1764594- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054435 ID=TCONS_00054435|Name=TCONS_00054435|organism=Clytia hemisphaerica|type=transcript|length=5235bp|location=Sequence derived from alignment at scaffold_242:1759360..1764594- (Clytia hemisphaerica)
AAGAAAGTTTCTTGGTTTAATGAAGGGTCGACAAAGAAGGTTTGATATTT
TTGGACCTACCCCGGTGGGGTGGAGGTCCTATAAATTAACCCGTGTTCGT
TAGTTAGTTAGTTAGTTAGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTA
GTTACCAACTTTTCTCGAGATTGGCTCATTCAATTTTTCTGATTTTTNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAATTTTCGAAAAAAAAATTTTTCCGGCCGG
TAGAACCGGAAATGTCCCGAAAAAAGCGGTTTTTTGAGATTTTCTCAAGA
TTTTATCATTAGTTTTTTGCGATATTTTGCACATAGATGCACATTAGTAC
TGCCGAAAAGGTGTCGAAAACCGTTTGCCGAAAAAAAATTTTTTCCGGTC
TGTAGAACCGGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTTTTTTGAGATTTTCTCGAGATTTTCTCA
TTAGTTTTTTGCGATTTTTTGCACATAGATGCACATTAGTACTGCCGAAA
AGGTGTCGAAAACCGTTTGTCGAAAATTTTTTTTTCCGGTCTGTAGAACC
GGAAATGTGCCGGAAATCGTCGCTTTTTTAACATTTCCGTCACATTTTTT
CAACTTATTTAATTGTTTCTTTACAGAAAAATGTTCTTTATGATGATGCC
CAAAACTTAGCATCGTTTGATTTCCAAAAANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTCTTTCATTTTTCTGTCTTTAGAAAAAAAGAAAGGAA
AATCTTCAAAATATTTTCCATCAGTGAATTTTAAGCTATTTCAGTGCAGT
ACGAATGCTTTACTCGCCCAAAAAGATCTCCAACACCCAATATTTTCTTG
AAAATTAGATTGGAAATCTTTAATTGGAGATTTTTTTCGAAAATTGATTT
CTTCGAATGATCGGTTATGACGAAAGTATTTTAGCTAATAAAGGAGGAAT
ACAAGTGTTTTTAGGAAAATCTGAATCAAATTGAATTGATAAAATTGTTG
ATGAAAATCTTGGTAAATGATCAAAAGATTTAAATAGACCTTATCAGAGT
TTTTGATTTTTCGAAAACAGCGATGCATTGTGGGATTGTTTGGGGGTATT
TATTACAATAGAATTCCCTCGAGGAATTCCTAAGAGATTTCTATTGTAAT
ACCCCCGAAACAAGCCCACAGTGCATCGCTTTTTTAGAAAAATAAAAAAC
ACGGATACGATCTATTTAGCGCCAAACAACTTTTTTTCGGACACACTGTA
TATGCATATAGTGTTCCATTCCCTGTTCATCATAGACCTGACGAATTTTC
AACACATTTCCAAGGGGAATGTCTACTGCAATTTATATTCCACACATCTG
CATTTCTTAACTCCTTATGAAAAAAATCTTCCCCTTTTTCAAAGTTCGTG
GTCAGACGGTTGTGAAATGAAAACAAAAAAAGAAGAAGACGAAGAAAAGA
GTGATAGAAGGTGGATTTTCAGTAAAAAAGGGGATAATTTGATGATTAAA
TTTAATATTGTCGCCATATTTGTATGTGTATACAGGTGTATTTTCTTGCT
TTAAGAATGATAGTCGTTGTCGAAATAGTAAAAGTTTTCTTTTGCTCTGT
TCAAAAAAGAAACTGGATTCAATTTAGTTCAGTTAGTTTCTCTTTTTGGA
GTTGGAAACAGAATGAAGAAGCTGATAAGAATACTACATCTTTTTCGCCG
GCTGAATATACTGTTGTTAATGACAGGGCTACGTTTCATTTCTGGGAAAG
GGCTATTTTATGGCATATTAGGCGGTCAAAAGGGGTTGGATTTTCTCCTG
TGTGAAAACCATGATATTTTGGCCCATCCGTTTCCAGAAGATGATGTTGG
CCCTGAATGAGTTTTGATCGTTGGTACAGATACAGATAAAAACTTTCTTA
AAGCTCTATTTAACATGGCTGAATTAATCCTGACTGAATGTTTATTTGTT
TTAATGTCTGATTAAATGAGTTTCATCTCCCAAAACATGAGCCCTTTAGA
GTTGGAAGGAAAACTTGTTTGGCTGTTCTGCATTTAGTTTTGTAAAAGTT
TGACAAAGTCTGCCGGCCATGTAGTTTAGGTTGAGGTTGTTTGAGGTTGG
TTGAGCAAATGTTGGCAGTTTTTATGTACTTGTACTTTTATGCAAGCGTT
TGCTTTCATTTTTGATCCAACAAAGCTGCTACTTTCCGTTGTTCGATTTG
TATGTTGAAAGTTTTTGTAAAGTCAACATAACATCGACTTGCAAACAAAA
CAGTGTTCTAAATCCAGCAACTTGCATCTGATATTAATTTATAGGGATTA
GCTCAATCGGATTGTTTGGTATGTGATGTTTAAGTAATGGAGAAATTTTC
AATGGTCGAGATTCGGCTGTTCTTATGTTTTTGATAATCTCATTTCGTTC
TTATTTTTAGTTCTTAAATCTGTTAGGCTCTGAAAGATCAGGAAGAAGAT
AAAGATTCAGCCGGCCGGGTACACGGTTTTTTATAAGAACAAACTATATG
AGAACGTAAGGTTTCGATGGACCAAAATCCTCCGAAGGCTTAAAAAATTT
TGGATGTTCTTTAAAAGAACGTATAATGAGTTTTGTTACAAGGGGTAAAA
ATCATATTTTCCATTTCATTTTTCAGGTTGCAAATAATCAGTCACCATGT
TGTCCTTCATTCCTCATCAAAACAACTTCCTCGCCTCGATGTCCTTCTTA
CAACATGCTTTAAGCTTGCCTCGGCTACCATTCAACATGTTCAACGACCC
TGGGTTGCTACATTTCAGCATCATTGCTACCATAGCAACAATCGCCATTA
TGGCAAACATTTACCTCGTCACTTACATCATGCGAACTAAAACGACGCGC
ATCTGCAAAAACTCTTGTTATGGATATTACCTGCTACACATCTCTTTTTT
GGATATCTTAGCATCAACTTTAGCGATTCTGTTATCCATAAATACACACG
CGGCGGTGAAACCATCTAGCTCATCAATGAGTTGGATTTCTGTGAATGGA
CATTATTTGAACCATATTTTTTGTGGTGTTGTCCACAGTACTATTGCATT
GATGCTTTACCAGAAATTCCTCTGTTTACGTAAATCTTCACATAAACGAA
AAGCATTCTTTAATTTGAAGCTGAGCTTATCCTTGACGTGGTGCTGGGCG
GTCGGAAGCGTACTCCCAGAGATCATTGTATATAAAAATGCAATCGAGGA
AGAAGATAGAGAAAACAGTTCATGTTTGATCGTTATAATTGTTTTGTTAA
TTATCGTTCCGTTGTTAATGATCGGTTATTATCGAATCAGTATTCTTCGA
TTACGAAGGAGTGAAAGCGTTTTATTATTGAAACGGAGTCGTGAATACCG
CAAATTTGCTTCCGTTTGCTTACTTTTATCGATAGCCCTGGTGGCTTGTA
ATCTACCCAAGTATTTATATCATCTTTTACAAATCATGAATAAGGAAGGG
AAAATTGATTTCTCATTTTCTGAAAAACTGCAGACAATCTTTGATACGAT
TTCCTGGCTTTATTTACCAGTTATACCGCTTATTTACTGTCTAACTTACC
GGATTTATAAACGCAAACCCAAGTTACCAGACCTGACCAATAGTAATAAC
AACAATAACAACATCAGCGCACTGCTTGAATCCAAATTCCTTTCCATGGC
GGCCACTCCAACACCGACCTCATTAACGACGTCGCGGAGCCAATCGGTAC
CGAATTTCGAACCTAGGAGACGCTCCTTGTTTGATAGACGTAAGAGTAAT
AGTAGTGTTGAGGATATCTTGGATATTTGTTCGCGAAGATTTTCAGCACC
GAATGTGGAAGTGAACCCCGAGCTTCTCTCATCCTGCATGTTGACTTTAG
AATCTATCTATGAGGCGAACAGGAAAAAGAAATCACTTTTCAGACAAGCA
TTGAGACGGTTCAGTGGGAATCCGACTGATAGTGTCGATGACGTCAGCAT
GATGTCATCACAAGATTCGATCCCATTCCCCCATGTTGTACATCGGTTGA
ATCAAGGCGGACAAAGTCCTTTGAAAGAGGATTGA Coding sequence (CDS) from alignment at scaffold_242:1759360..1764594- >TCONS_00054435 ID=TCONS_00054435|Name=TCONS_00054435|organism=Clytia hemisphaerica|type=CDS|length=1389bp|location=Sequence derived from alignment at scaffold_242:1759360..1764594- (Clytia hemisphaerica)
ATGTTGTCCTTCATTCCTCATCAAAACAACTTCCTCGCCTCGATGTCCTT
CTTACAACATGCTTTAAGCTTGCCTCGGCTACCATTCAACATGTTCAACG
ACCCTGGGTTGCTACATTTCAGCATCATTGCTACCATAGCAACAATCGCC
ATTATGGCAAACATTTACCTCGTCACTTACATCATGCGAACTAAAACGAC
GCGCATCTGCAAAAACTCTTGTTATGGATATTACCTGCTACACATCTCTT
TTTTGGATATCTTAGCATCAACTTTAGCGATTCTGTTATCCATAAATACA
CACGCGGCGGTGAAACCATCTAGCTCATCAATGAGTTGGATTTCTGTGAA
TGGACATTATTTGAACCATATTTTTTGTGGTGTTGTCCACAGTACTATTG
CATTGATGCTTTACCAGAAATTCCTCTGTTTACGTAAATCTTCACATAAA
CGAAAAGCATTCTTTAATTTGAAGCTGAGCTTATCCTTGACGTGGTGCTG
GGCGGTCGGAAGCGTACTCCCAGAGATCATTGTATATAAAAATGCAATCG
AGGAAGAAGATAGAGAAAACAGTTCATGTTTGATCGTTATAATTGTTTTG
TTAATTATCGTTCCGTTGTTAATGATCGGTTATTATCGAATCAGTATTCT
TCGATTACGAAGGAGTGAAAGCGTTTTATTATTGAAACGGAGTCGTGAAT
ACCGCAAATTTGCTTCCGTTTGCTTACTTTTATCGATAGCCCTGGTGGCT
TGTAATCTACCCAAGTATTTATATCATCTTTTACAAATCATGAATAAGGA
AGGGAAAATTGATTTCTCATTTTCTGAAAAACTGCAGACAATCTTTGATA
CGATTTCCTGGCTTTATTTACCAGTTATACCGCTTATTTACTGTCTAACT
TACCGGATTTATAAACGCAAACCCAAGTTACCAGACCTGACCAATAGTAA
TAACAACAATAACAACATCAGCGCACTGCTTGAATCCAAATTCCTTTCCA
TGGCGGCCACTCCAACACCGACCTCATTAACGACGTCGCGGAGCCAATCG
GTACCGAATTTCGAACCTAGGAGACGCTCCTTGTTTGATAGACGTAAGAG
TAATAGTAGTGTTGAGGATATCTTGGATATTTGTTCGCGAAGATTTTCAG
CACCGAATGTGGAAGTGAACCCCGAGCTTCTCTCATCCTGCATGTTGACT
TTAGAATCTATCTATGAGGCGAACAGGAAAAAGAAATCACTTTTCAGACA
AGCATTGAGACGGTTCAGTGGGAATCCGACTGATAGTGTCGATGACGTCA
GCATGATGTCATCACAAGATTCGATCCCATTCCCCCATGTTGTACATCGG
TTGAATCAAGGCGGACAAAGTCCTTTGAAAGAGGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054435-exon-scaffold_242-1575043694:1764556..1764594 | TCONS_00054435-exon-scaffold_242-1575043694:1764556..1764594 | Clytia hemisphaerica | exon |
| TCONS_00054435-exon-scaffold_242-1575043694:1759360..1760768 | TCONS_00054435-exon-scaffold_242-1575043694:1759360..1760768 | Clytia hemisphaerica | exon |
| TCONS_00054435-exon-scaffold_242-1510915933:1764556..1764594 | TCONS_00054435-exon-scaffold_242-1510915933:1764556..1764594 | Clytia hemisphaerica | exon |
| TCONS_00054435-exon-scaffold_242-1510915933:1759360..1760768 | TCONS_00054435-exon-scaffold_242-1510915933:1759360..1760768 | Clytia hemisphaerica | exon |
| TCONS_00054435-exon-scaffold_242-1491911889:1764556..1764594 | TCONS_00054435-exon-scaffold_242-1491911889:1764556..1764594 | Clytia hemisphaerica | exon |
| TCONS_00054435-exon-scaffold_242-1491911889:1759360..1760768 | TCONS_00054435-exon-scaffold_242-1491911889:1759360..1760768 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1759360..1764594 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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