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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054434 ID=TCONS_00054434|Name=TCONS_00054434|organism=Clytia hemisphaerica|type=transcript|length=1681bp
CTGTTtcttattttcctaaaaaatcaaaaaaagggtACTCAAAAAAATTA
GCTTATTGCAACATTTAAAACACAACGACAAAGCTGGGACTTACACAGCA
ActcttttaaaaattatgcgTTTACAAATGAGGTGTTTTTTCTCAGTCTT
GCTTAGAATTCGAATGTTTCACATAGTTTAGAATCCAATCCAATATGAAT
TTCTTGACCACTGAGAAAATAATTGAAGACAATGTTATCGTCTTCAAATA
GAAATTGCCATCGTCCTCCGAGGAGGCCTGGTGATGACTTTCAGTTTGTT
TACTTATTGTGATATTCTCTGCATTTTCTCTACAAAGTTCAGTATCACAT
TCTTGAACAATCTTTCGATAATACTCCatgaaaacatcaaaatcacaATC
TAGCTCTGAAACACAACACGGCATTTTCACTAAGCGTTCGTTCCAATATA
ACTGAATTTTCCATTCGCCCGAACATTCGTATAAAACGAAATAAAAGTTG
GCGGAAAAAGGAGCAATGATCGAGCTACGGAAATGCCGATTCATCAGTTC
AACATAGTTATCGTGTCTTAAGGGTGTTGTTTGTTCGTTAAGCCCAAATA
GAGAAAACATCATTGTAACCGCCTGAGAATGTGTTGACCGGAAGATCCCA
ACCGACTCAGTCTCATTCTCGACCACTTGTTCTAGGGTGGTTAGGAAATC
TTTTAATAAGAAGCATCCAATTTCATAAGTGATCGGGTTCTGAAGATTCG
ATTCCGTGTAAAACTTCTCCAAATCGCTTGCATACTCGAATACTTGGCGG
TCTTCCTTCTCAAGGAGGGCGCAGAACCCCGATTCCAGGGTGCCGTCAAA
CATACCAAGCTGGTAAGCACAACCAACGTAAATCATTTCCAGATTCGTGA
AACTCAAATCCTTCAGATTCAATTTCTGTTCGactttctttttgactttt
tgtactTCAGCACCtttctgaaatttcaaatattcaataattgtttcatt
tttatcatcGATATTTCGAATGTATTTCGGACAAGCATCATAAAAACGTA
ACAGTCGATCATTTGGATCTTTAGGGCTGACATCGATAGCAATAGGCTGG
ATCCGTCCTCCACCTAGGGCACCGTTTCCATCAAACAAACCAGAAGCTAG
TGAATTAGCACTGTGGATAGTGCGTAGTTTATTACTACTCATAAAGTATT
GAGTGACCGGAGAGTATTCCGCTTTCAAGAGATCCGGAAAACGTTTTTTG
ATTCGCTGTCCGATACCATACAGCTCTTTTTCGCCGGTTCTGGTGAGCAT
TGATTTCTGTTTCATCTCGAAAGGAGAATACCATGGCAAAGTGAAGTTTA
AACCAGGAGCAACTCTACCAGTATTGATCTTATCCGATAATTGTTTGAAT
TTGGCGGTGTCTCCACCGGACGGATATCGATGTCCGTGCCGATGGACCAT
ATTAATTTGTTTAACGATGCATTCCGAGTGTGGTTTCGTGACATTTAATT
CGTCATTTTCGATAAAGGAGTAGGGTGTCTTGGTGGAAAATAACCCTTCT
TGATAGCTTAAAACTGAGTGAACGATAAACCCACAAAGAAGAAGGCGACA
AAAAGCCATTATACTCTAAGTCTGCCGTTACAAATATGAGCGAAAACTTT
CTTTCCACAAATACGCCACTAAGAACCTTTC Run BLAST on NCBI transcript from alignment at scaffold_242:1740667..1745632- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054434 ID=TCONS_00054434|Name=TCONS_00054434|organism=Clytia hemisphaerica|type=transcript|length=4966bp|location=Sequence derived from alignment at scaffold_242:1740667..1745632- (Clytia hemisphaerica)
CTGTTTCTTATTTTCCTAAAAAATCAAAAAAAGGGTACTCAAAAAAATTA
GCTTATTGCAACATTTAAAACACAACGACAAAGCTGGGACTTACACAGCA
ACTCTTTTAAAAATTATGCGTTTACAAATGAGGTGTTTTTTCTCAGTCTT
GCTTAGAATTCGAATGTTTCACATAGTTTAGAATCCAATCCAATATGAAT
TTCTTGACCACTGAGAAAATAATTGAAGACAATGTTATCGTCTTCAAATA
GAAATTGCCATCGTCCTCCGAGGAGGCCTGGTGATGACTTTCAGTTTGTT
TACTTATTGTGATATTCTCTGCATTTTCTCTACAAAGTTCAGTATCACAT
TCTTGAACAATCTTTCGATAATACTCCATGAAAACATCAAAACCACAATC
TAGCTCTGAAACACAACACGGCATTTTCACTAAGCGTTCGTTCCAATATA
ACTGAATTTTCCATTCGCCCGAACATTCGTATAAAACGAAATAGAAGTTC
GCAGCAAACGGTGTGATNCGCCCGAACATTCGTATAAGACGAAATAGAAG
TTCGCAGCAAACGGCGTGATTTGTGAGCTTCGAAAATATTGTCGTCTCCC
CTTAAGATAATGTTGGAAATTTTCACTTCTCAATGGAACATGTTGTTTGT
TTAATCCAAGCAATGTATACATCATCAACATGGCGGTCGAATGCGCAGAT
CTGAAGATCCCAACCAACATGGTGTCGCCATCTCTGGAAGCTTGCAGGTA
ATCAAGCATATCTTTCAATAACGGACATGCGATCTGATAAGTTAGCGGAT
TGTTTGGGTTGGCAGAAGTGTAGAACTTCTCCAAGTCATCAGCGTATTCT
AAAACCCGGCGATCTTCGTCATCGAGTAAAGAACAGAGACCGGTATCTAA
GCTACCGTCAAACATGGAGAGCTCATACGCACAGCCGATGAAAATAGCGT
CCAAACTACGATGAGTTAACNCCGTCAAACATGGAGAGCTCATACGCGCA
GCCGATGAAAATAGCGTCCAAACTACGATGAGTTAACTGTATATTTGGAA
GGTTCAATTTGACCTTTATTTTGTCCGCAACTTTTTTGATTTCTTTTCCA
TGCAAGAATATCTCATGTTCGGAAAGGGCTATCGCGTTCTTTTTGATTTC
TTGTTTATAGCGGTGGCAATTATCGTAGAATCTCAATACGCGACAATCGT
TCGGTGATATATCTAAAGCGATCGGTTGAATCCTGCCGTGTAGCGAACCG
TCGCCATCAAATAAACCAGCTGCAAGAGACGTCGCACTGTGAGTAGTACG
TAACTTATTCGTACTCATGAACTTGAAACGTCTCGTGTTGTAACGTTGCT
CAAACAGCTCCGGAAAACGTTTCCGTGTACGGATCCCGATGTTGTATAGT
TCTTTCTCTCCCACGTGTGTTAAGTGTGATTTATGGTCTTCATCTAATGG
CGGCTCCCAGGGTAAACCTAGCACCATTTCCGGGGGCGACTCGACCTTCC
AATTGATGAGTTTCGACAATTCTTTGAAGTTTAGGATGTAGTTTTTGGAG
GGAAAGCGATGTCCATGTCGGTGTACGAAATTAAGTTGCTTAACTTTACA
TTGAGGTTGGGGTCTGAGTATCAAAACGTCTGTATTCTCGTGTAAAGCGT
AAGGTGTCTTGATTGCGAACGAGGCTTTTTCTTGCTGTCCACAGACCATA
GTATATGCGTGGAAAAAGGTAGCAAGTAGCCGCAAAAATGACTTCATTTT
CTAAATGAAAAATAAATCAAAAACTGATTTTATACACAAGAAAAGCGTGA
TTCCTGATTTCCATTGACATTACTGGTCAAATTATCTTATGAAGCTTTTC
AAACTTTAGCAAAACCGTAGTAAAAATATAGTAGTTGGCTTTGGATCATA
AACTCNCTTTAGCAAAACCGTTGTAAAAATATAGTAGTTGGCTTTGGATC
ATAAACTCTAAACCAACCATAAAAACTAATTCCGTTTTGCTTTTTTTAAA
TAAAGAAAAACCAAAGATTTTCGATTCTAAAGTATCCCATTTTAGCCGAG
GAGAGAAGTTTATTTGTTTCTTTTTAGGATTTGTAACTATATTGGATGAA
AACGAAAGTACGTAATCAGAAACCTTGGTGATGGCAAAAGATATCTCAAA
TGGATAAAATTCCACAATCTAGGTCAAAATATATTGATAATTTTGGTTAC
TTTAACGTTCTTCAAAATTCAAAGCTCGGGCTAGAATGGCGATGAATGGT
TTCACTTTATTTCATGGAATACACCCCCTGTGTCACCGACCCGCTGGGAC
CCCAGCCCCACTGGAAAATTTGACCAAAATTTCGTCCCCGGTACTAAAAA
TACCCCAAAATTTCAGCCCCATTGGGAAATTGACTTTGATTACATCCCCA
TTCAAATTTCATTGTAAAAAATTGCACTCCAAAACCATCCCCACTGGATC
TTTTAAGCTTGGAACAATAGAATCTCTATCCCCATTGGGATTACGATGGA
AAATTTTATCCCCGCTGTGAGAAACAGTTTCACCGGGGCTGTGAGACAGG
GGTGTTGGAATAAAACAATTCTTCAGTAACTGTACATGTCTTCACACAAC
CAATCATTGAAAATATTTCAAAATTTCATTTCAAACGTACCTGAAGAATT
TTGCTGGATAGTCGTGGGAATTCAGTATGTCTTGTTATCTAAATCTTTGC
CGGCACAAAGAAATTTCACAGTAAAAACTGATGACATACCCTTGCTACGA
AAGCAAATTTATTTTCTTCACATTCACTTCACTACAAGTAAGCAAGGTGA
CAAGCGGGAAAAGAAATTATTTCCACATATCGAAATTTTTCATTCGCGAA
TATATCAAAAAAATACCCTAATATAATTTCAAAACGTGAATCAATTTTTT
TGACCATTTTTTACATTATTCATAACATTATAAAATCATCAATTTGGCAT
AAAATAAAAATAGAATATTGATACAAAATTGACTAAATCATTGAATACTT
TCAATCTGTAATTATGATTTTATAGCTAAAACACAGTCCATTGATATTGA
ATAAATTAGATTGATCAACTATCCCGGGATAGGTAAATTACAAATGATAT
TATGTTAGTTTTCCAAATTTAGTAGAGTAGGCTCATTAGTTTTAGATTCT
TAGATCCAACTTTCCGCATTTTCAACCAAGGGGAAAATGAAGTTCGACCG
ACAAGTGTAAAGGACATCGATCAAAATGAGAAGAAATATTCTATACTTAG
GGGTCAACCTCGTTTCCTGCGTATTATCAGATTTGATGTTTACTGATAAC
TCCAGATATTATTTTATGTCGTTCATCAGTCGCCTTAAATAAAACCTGGG
ATACACTGAGACGAGGCTAGCTTAGAAGGCATCACTATCGATATCAACCC
TGCATCATTTATAGGCCCAGTTACTGCATCAATATTGAGCAATACTTCAG
ACTATCCTCAAAAAGAAAGAAGGAGATCCCAGAAATCAGAGGAATAAAAA
ACGACGAAAAGAAAAAATTTCATTAATACACAAAATTCAAGAAGCTGACC
ACAATGAATGTTAAAATCGACAGTTTAAGAAGCAGCCCCGTTAGTGGATG
GAAGGTCACACAGCTCATCAAAAGTTTCTGAGCACGAATCCGCCATATCT
TTATAGTGGTCCATAAAAACATCAAAATCACAATCTAGCTCTGAAACACA
ACACGGCATTTTCACTAAGCGTTCGTTCCAATATAACTGAATTTTCCATT
CGCCCGAACATTCGTATAAAACGAAATAAAAGTTGGCGGAAAAAGGAGCA
ATGATCGAGCTACGGAAATGCCGATTCATCAGTTCAACATAGTTATCGTG
TCTTAAGGGTGTTGTTTGTTCGTTAAGCCCAAATAGAGAAAACATCATTG
TAACCGCCTGAGAATGTGTTGACCGGAAGATCCCAACCGACTCAGTCTCA
TTCTCGACCACTTGTTCTAGGGTGGTTAGGAAATCTTTTAATAAGAAGCA
TCCAATTTCATAAGTGATCGGGTTCTGAAGATTCGATTCCGTGTAAAACT
TCTCCAAATCGCTTGCATACTCGAATACTTGGCGGTCTTCCTTCTCAAGG
AGGGCGCAGAACCCCGATTCCAGGGTGCCGTCAAACATACCAAGCTGGTA
AGCACAACCAACGTAAATCATTTCCAGATTCGTGAAACTCAAATCCTTCA
GATTCAATTTCTGTTCGACTTTCTTTTTGACTTTTTGTACTTCAGCACCT
TTCTGAAATTTCAAATATTCAATAATTGTTTCATTTTTATCATCGATATT
TCGAATGTATTTCGGACAAGCATCATAAAAACGTAACAGTCGATCATTTG
GATCTTTAGGGCTGACATCGATAGCAATAGGCTGGATCCGTCCTCCACCT
AGGGCACCGTTTCCATCAAACAAACCAGAAGCTAGTGAATTAGCACTGTG
GATAGTGCGTAGTTTATTACTACTCATAAAGTATTGAGTGACCGGAGAGT
ATTCCGCTTTCAAGAGATCCGGAAAACGTTTTTTGATTCGCTGTCCGATA
CCATACAGCTCTTTTTCGCCGGTTCTGGTGAGCATTGATTTCTGTTTCAT
CTCGAAAGGAGAATACCATGGCAAAGTGAAGTTTAAACCAGGAGCAACTC
TACCAGTATTGATCTTATCCGATAATTGTTTGAATTTGGCGGTGTCTCCA
CCGGACGGATATCGATGTCCGTGCCGATGGACCATATTAATTTGTTTAAC
GATGCATTCCGAGTGTGGTTTCGTGACATTTAATTCGTCATTTTCGATAA
AGGAGTAGGGTGTCTTGGTGGAAAATAACCCTTCTTGATAGCTTAAAACT
GAGTGAACGATAAACCCACAAAGAAGAAGGCGACAAAAAGCCATTATACT
CTAAGTCTGCCGTTACAAATATGAGCGAAAACTTTCTTTCCACAAATACG
CCACTAAGAACCTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054434-exon-scaffold_242-1575043694:1745248..1745632 | TCONS_00054434-exon-scaffold_242-1575043694:1745248..1745632 | Clytia hemisphaerica | exon |
| TCONS_00054434-exon-scaffold_242-1575043694:1740667..1741962 | TCONS_00054434-exon-scaffold_242-1575043694:1740667..1741962 | Clytia hemisphaerica | exon |
| TCONS_00054434-exon-scaffold_242-1510915933:1745248..1745632 | TCONS_00054434-exon-scaffold_242-1510915933:1745248..1745632 | Clytia hemisphaerica | exon |
| TCONS_00054434-exon-scaffold_242-1510915933:1740667..1741962 | TCONS_00054434-exon-scaffold_242-1510915933:1740667..1741962 | Clytia hemisphaerica | exon |
| TCONS_00054434-exon-scaffold_242-1491911889:1745248..1745632 | TCONS_00054434-exon-scaffold_242-1491911889:1745248..1745632 | Clytia hemisphaerica | exon |
| TCONS_00054434-exon-scaffold_242-1491911889:1740667..1741962 | TCONS_00054434-exon-scaffold_242-1491911889:1740667..1741962 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1740667..1745632 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016791 | phosphatase activity |
| GO:0003993 | acid phosphatase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003993 |
acid phosphatase activity |
| molecular_function |
GO:0016791 |
phosphatase activity |
Blast
BLAST of TCONS_00054434 vs. Swiss-Prot (Human)
Match: MINP1 (Multiple inositol polyphosphate phosphatase 1 OS=Homo sapiens GN=MINPP1 PE=1 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 2.789e-27 Identity = 112/419 (26.73%), Postives = 200/419 (47.73%), Query Frame = -1
Query: 320 CIVKQINMVHRHGHRYPSGGDTAKFKQLSDKI------NTGRVAPG---LNFTLP----WYSPFEMKQKSMLTRTGEKELYGIGQRIKKRFPDLLKAE-YSPVTQYFMSSNKLRTIHSANSLASXXXXXXXXXXXGRIQPIAIDV--SPKDPNDRLLRFYDACPKYIRNIDDKNETIIEYLK-FQKGAXXXXXXXXXXXKLNL--KDLSFTNLEMIYVGCAYQLGMFDGTLESGFCALLEKEDRQVFEYASDLEKFYTESNLQNPITYEIGCFLLKDFLTTLEQVVENETESVGI-----FRSTHSQAVTMMFSLFGLNEQTTPLRHDNYVELMNRHFRSSIIAPFSANFYFVLYECSG------EWKIQLYWNERLVKMPCCVSELDCDF-DVFMEYYRKIVQECDT----ELCRENA 1471
C Q+ + RHG RYP+ K +QL + + G + G L L WY+ + Q L G +++ + R+ FP L E Y + ++S+K R + S+ A+ L G P D+ P ND+L+RF+D C K++ ++ KN T + +++ F+ G E+Q + KKV L + DL+ +++ + C++ L + ++S +C + + +D +V EY +DL++++ + I C L +D L++ VE + S I + H++ + + SL G + PL NY + M+R FRS +I P+++N FVLY C ++++Q+ NE++ +P S+ F + +Y+ I+Q C T EL R N+
Sbjct: 78 CTPVQLVALIRHGTRYPTVKQIRKLRQLHGLLQARGSRDGGASSTGSRDLGAALADWPLWYADWMDGQ---LVEKGRQDMRQLALRLASLFPALFSRENYGRLR--LITSSKHRCMDSS---AAFLQGLWQHYHPGLPPPDVADMEFGPPTVNDKLMRFFDHCEKFLTEVE-KNATALYHVEAFKTGPEMQNILKKVAATLQVPVNDLNADLIQVAFFTCSFDLAI--KGVKSPWCDVFDIDDAKVLEYLNDLKQYW-KRGYGYTINSRSSCTLFQDIFQHLDKAVEQKQRSQPISSPVILQFGHAETLLPLLSLMGYFKDKEPLTAYNYKKQMHRKFRSGLIVPYASNLIFVLYHCENAKTPKEQFRVQMLLNEKV--LPLAYSQETVSFYEDLKNHYKDILQSCQTSEECELARANS 482
The following BLAST results are available for this feature:
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