TCONS_00054433 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054433
Unique NameTCONS_00054433
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2612

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054433 ID=TCONS_00054433|Name=TCONS_00054433|organism=Clytia hemisphaerica|type=transcript|length=2612bp
GGTGGTATTCTTTTCAGAGGTTTTCTTTTCTAATTaaatctttctctttt
gttcTCACACACACAAAAGGTTTTGAATGAAAACCCGGAATAATGGAAAT
CCAATGTCAAAGAAAGCACTAAAAACAATATCGAAATATTGAAATCACTC
GCTCTTACAAttacaaaaatttataaaagagCGAACACGTCTCTGGCCGC
CAGTCAGTTCAAAGGAATCAACGCACATAGACGCGCGCtaagaaataata
ataataaaaaacatgattccgaattttgaaaataatagcGCGCCAATGAC
TAATTCGTACGGTTATCAACCTGTGGCTTATGGTGAAAACGGCTTGCCGT
ATAATGAAATGGCATCGTCTCAACAGACAGACGGACAACAAAAAGAAGGA
CACAAGTATGCTACCGGCAATAAAACCTTACCGTATTACGGGAATTCCAC
ATTCAAAGACCCAAATCCTTTTTTCTCTACTTTTCAACCGAACTTCCACC
AGCGATTTACACATTTCGGGGCATCGGGCTTGGGTTATTTTCCAAACCCA
TACTTGACTTCGTTTTATGATCGTATGCATGAGATGGAGGCTAAGATTCC
ATTAGAGTACGCCAGGGTGTGGTTGGATCATCAGACTTTGTGGAGAAGGT
TCAGTGTTTGCGGCAATGAGATGATTATCACTAAAATGGGAAGACGTATG
TTTCCTGTACTGTCGTTTGGTGTCCACAGTTTGAATTTCACAGACCTCTA
CACAATGGAAGTGGAAGTGATACCTTCTGATAACAATCGTTACAAATACG
TCAGTGTCACAGGCTGGAGAGTCAATGGCGTCGCTTCTCAGCAAGAAGGT
AATAAACGCATGTATCATCCTGAAGGCATTCAAACAGGCGAATACTGGCA
GAAGAATGGAGTGGCTTTCAAAAGAATCAAGTTAACAAATAAGAAGACTG
CTAAAGAAGGCTCTAATAATATCGTTCTCAACTCCATGCATAAATATCAC
ATCCAACTAGTTATCAAACAAATCGGATTGGACGACCAAGTTCTCGACAC
AAAGAAATTCGAATTTAAAGAAACAGAATTCATAGCCGTTACGGCGTAtc
aaaatgatgacgtcactcaatTGAAGATCGATCATAACCCGTTCGCAAAG
GCATTCAGAGATAACGCAAATGAGCATTGTGAACGATCACAATATACAGA
CATATACATGACCCAACCAAAACGTCGAAAATGTCAAAGCTACGATGAAG
TCACAAACCAGACGACAAATCACGTGATGAACGACCCCATCTTGGTTGAC
AATAGCAACAACAACTCAAACACAACGAATGAAGCGACTTTCTCCCTTCC
TTTAATGAACAACGAGAACCAATCAGTGACCGAGGAGGATAAGAACCGGC
TACTTATGAACTTCAATAATGATACTAGTACAAGTAGCACTTCATATACC
AATGCTTTAACAAacttttcaagtttcaattGTAATTCGAACGATTATAA
TAATTCGATGAATTGGTTCCAACCAATTAACTTCGAATCACATGACATCG
AGGAACAATCGAATCTTTTATCGACTCAACATACACAATCGGAGCAAAAC
CTACACTCTAATGAAGTTTCAACAATAACGAACGCATTTCATCCACAAAA
ATCTCCGACTCATCCTTCGAGTGAATCGATAGATAACGAACAGAAACCAC
GACAAACCGATATTGTTATTGATTTATCGAAGTCTTATAAATCGGTTATG
TGAAACGAAAGGTCTGGCGTTCAAAACAACATCAGAGCAATTTCCGAAAG
TTTGGGCGGATTTCTAGGTGCTGGTTATCATTCTAGGTAGTCGAAATTAG
CTTTAGCATAGAATGCTTTAGATATGTAACATATCCCAGAATAAGGTCGC
AGAGCAGAATTCGATCGATAAGGGGTTATTTCCACCACATCTTAGGCGAT
ATTGAGTATTCAGTGACAGATCAAAATGAAAGATTATTGTTCAACAGCGC
AGAAAACaataattgcgtagaaaaaaaaagatcaatgAACCAAAAAGTAA
ATTAAGATATGAAATCACATTCCGCGtctgcaatttttttttcttctttt
tccaaaaactcCTCCCATAAAAAACGATTTCAACATTCGAATTTCAGCGT
CATCATAACATTACAAAAACGGACAATATATTTTTGCAACAGACCATAAT
TATTATGGTATTGTCATCATAATTGCTTATAGGCGGAGAAAAGGATCATT
GATTACTCCCAGatatttttgcgatattttcttaatttcttgGATACACT
CTTaagtgaagaaaaaacaaatcttaTATATTTGACTACTGGGAATTTTT
AAGCCAGCCTCTGTTCATGTTTCAAGCTAATAGTTTGATTACCACCCCCC
CCCTAAAATGTCGAATTCTATTGTATTTAATGCCTCGTTCTAAAGGTAGT
AATTATAAATTGCAttgtttattgttgttttgtcattattattatttatt
tgagTATAgttttatttatcaaaataaatttgtgcatattttagaaagag
tatcattttgttaatatttataAATGTCGTTTAAAAGTAATATATTCAGC
gagaaatataaa
Run BLAST on NCBI

protein sequence of Tbx transcription factor

>TCONS_00054433-protein ID=TCONS_00054433-protein|Name=Tbx transcription factor|organism=Clytia hemisphaerica|type=polypeptide|length=496bp
MIPNFENNSAPMTNSYGYQPVAYGENGLPYNEMASSQQTDGQQKEGHKYA
TGNKTLPYYGNSTFKDPNPFFSTFQPNFHQRFTHFGASGLGYFPNPYLTS
FYDRMHEMEAKIPLEYARVWLDHQTLWRRFSVCGNEMIITKMGRRMFPVL
SFGVHSLNFTDLYTMEVEVIPSDNNRYKYVSVTGWRVNGVASQQEGNKRM
YHPEGIQTGEYWQKNGVAFKRIKLTNKKTAKEGSNNIVLNSMHKYHIQLV
IKQIGLDDQVLDTKKFEFKETEFIAVTAYQNDDVTQLKIDHNPFAKAFRD
NANEHCERSQYTDIYMTQPKRRKCQSYDEVTNQTTNHVMNDPILVDNSNN
NSNTTNEATFSLPLMNNENQSVTEEDKNRLLMNFNNDTSTSSTSYTNALT
NFSSFNCNSNDYNNSMNWFQPINFESHDIEEQSNLLSTQHTQSEQNLHSN
EVSTITNAFHPQKSPTHPSSESIDNEQKPRQTDIVIDLSKSYKSVM
Run BLAST on NCBI

transcript from alignment at scaffold_242:1731843..1737374-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054433 ID=TCONS_00054433|Name=TCONS_00054433|organism=Clytia hemisphaerica|type=transcript|length=5532bp|location=Sequence derived from alignment at scaffold_242:1731843..1737374- (Clytia hemisphaerica)
GGTGGTATTCTTTTCAGAGGTTTTCTTTTCTAATTAAATCTTTCTCTTTT
GTTCTCACACACACAAAAGGTTTTGAATGAAAACCCGGAATAATGGAAAT
CCAATGTCAAAGAAAGCACTAAAAACAATATCGAAATATTGAAATCACTC
GCTCTTACAATTACAAAAATTTATAAAAGAGCGAACACGTCTCTGGCCGC
CAGTCAGTTCAAAGGAATCAACGCACATAGACGCGCGCTAAGAAATAATA
ATAATAAAAAACATGATTCCGAATTTTGAAAATAATAGCGCGCCAATGAC
TAATTCGTACGGTTATCAACCTGTGGCTTATGGTGAAAACGGCTTGCCGT
ATAATGAAATGGCATCGTCTCAACAGACAGACGGACAACAAAAAGAAGGA
CACAAGTATGCTACCGGCAATAAAACCTTACCGTATTACGGGAATTCCAC
ATTCAAAGACCCAAATCCTTTTTTCTCTACTTTTCAACCGAACTTCCACC
AGCGATTTACACATTTCGGGGCATCGGGCTTGGGTTATTTTCCAAACCCA
TACTTGACTTCGTTTTATGATCGTATGCATGAGATGGAGGCTAAGATTCC
ATTAGAGTACGCCAGGGTGTGGTTGGATCATCAGACTTTGTGGAGAAGGT
TCAGTGTTTGCGGCAATGAGATGATTATCACTAAAATGGGAAGGTAAGAA
TTTCTTTCAATAGGCCATTTCACAGTCGCAAAGCCTAATGGGTAATCAGG
ACCACTGCGCGCTAATGACGACTTACTATTGGTCAAAAGTTTTGAACATT
TTTGAAGATTTTTGCGTCTAGCCAACAGAAAGCCTTTACGGAGGCGCAAT
CAGTCCTGATTACTCATGATTCATTTCGACTGTGAAATGGTTTATACACG
TGTTTTGGCTAATACAGAATATTGTAGCGTAGAGGTAGTCTTAGGGATTA
AAAGAATATACAGTAAGATCTCTCATTAGAAGACACCATCGGCGAAACTG
ATTAGTGTCCGATAGCAAGGGGCGTTCTTATTTTGGAGTGTCCGCTAATT
TGAGGTTCTACTATTATTTCTTGTTTTTGAAACAGAGATATGTCACGGGG
ACAAGAGAAACTGTCTCTCTGATAACAATATATTTATATTTGGGATCGAA
TCTGGAAACAATCGGTGGAAGTGTTTTCTTGCATTTACTAAGCATCATAT
AATTGAATGCTGAATAAGATGGCTATAATGTTGGTTACTATAACAATATT
TATAAAATCCACCATGACAGATATTCTAGAGTTGACCAGTATCCTTTAAA
TTTTAGAAATCTGCTTCAGAAGTGAAAAACCTGAGAGTTTACCCTTTGAC
CAAACTTAAAGCCAGCCTAAAATCGCTTTTTTATGATTCTGCTAGCGCTC
GCGAAAATAAGATTGTCCATCAGTAAATTAAAAAAGTGGTGAAAATGGCA
TCAGGTACGAAATTTCACATTTGATATAAAAACGTCATTTTGCTAGAACT
TCAAAGCTTATTATCATGTTCGATTCTCTTTCAACTTTAGACGTATGTTT
CCTGTACTGTCGTTTGGTGTCCACAGTTTGAATTTCACAGACCTCTACAC
AATGGAAGTGGAAGTGATACCTTCTGATAACAATCGTTACAAATACGTCA
GTGTCACAGGCTGGAGAGTCAATGGCGTCGCTTCTCAGCAAGAAGGTCAG
TGGAAAACTTTTTTTCAATTCTTTTCTTACTCTCCATGAATACACTTTCT
CAGTCGCTTTTCAATGTAAGTATAAACAATTAGATATATTTCAAAATTTA
ATACATTTATGTACTTATTTCGTGATTCTCGACCTCCTTATTTGAAATCC
TGGATAAGATTTGCATCCCCAGATAATTATGGCATTTGTTTTTCCTTTGG
CTGAGGCTTTCTTTGCTACAAAACAACCATGTTACAGTGGATTATCGAGT
TTATTTTCTGTTCCCATGCAAAACGAGGGGTAAATCACTAAAAATTAGGT
GTACGAGATTTTGATTTCTTTTTGATTTTTGATTTCTTTTTGATTTCTTT
TTGATTTTTGATTTCTTTTTGATTTCTTTTTGATTTCTGATTTCTTTTTG
ATTTCTTTTTGATTTCTGATTTCTTTTTGATTTCTTTTTGATTTCTGATT
TCTTTTTGATTTCTTTTTGATTTCTGATTTCTTTTTGATTTCTTTTTGAT
TTCTGATTTCTTTTTGATTTCTTTTTGATTTCTGATTTCTTTTTGATTTC
TTTTTGATTTTTGATTTCTTTTTGATTTCCTTTTGATTTCTGATTTATTT
TTGATTTCTTTTTGATTTCTGATTTCTTTTTGATTTCTTTTTGATTTTTG
ATTTTTTTTTTGATTTTTTTTTTATTTTTTATTTTTTTTTTTATTTTCAT
TTTGATTTCTTTTTTATTTCTTTTTTATTTCTGATTTCTTTTTGATTTTT
GATTTCTTTTTGATTTCTTTTTGATTTTTGATTTCTTTTTGATTTCCTTT
TGATTTCTGATTTCTTTTTGATTTCTNNGATTTCTTTTTGATTTCTTTTT
GATTTCTTTTTGATTTCTGATTTCTTTTTGATTTCTTTTTGATTTCTGAT
TTCCTTTTGATTTCTTTTTGATTTTTGATTTCTTTTTGATTTCTTTTTGA
TTTTTGATTTCTTTTTGATTTCTTTTTGATTTTTCAAAAAGGTGTACGTG
ATTTTTTTCAGTGATTTACCCCTCGATGCAAAACACGCCCTAAAAGTCGA
ATCTCTCAGTAGTTCGAACAAAATTCCCGTTCGAGTTTAAATTGGCGAGA
GCTAACTGTAGTCCAGTGTGTTCGATCAAAACTAGAGTGTTCTCCATAAC
CCAAACCTCTACAAGTCGAACAAAATTGTGTGCCGAGCGTTTTCGAGTTA
CGAAGACTTCACTGTAGGTAGCTTATATATTATTCTAAGTTATTGACTTA
AAATCATCTTGTTTCCTAGGTAATAAACGCATGTATCATCCTGAAGGCAT
TCAAACAGGCGAATACTGGCAGAAGAATGGAGTGGCTTTCAAAAGAATCA
AGTTAACAAATAAGAAGACTGCTAAAGAAGGCTCTAATAATGTAAAGTCA
AATCTTTTTGAACCCTTCTAGAAAAGCTAGATCGAAAATAGTTAGAGATG
GATTATTGGTATTATCTATCACAAGAATTAAAGGCATTGCAGACCAAAAT
CCCAGGGGTACTATAACAAGTGAAAGGTACGGGTGTGTTCTGCCCTAAAG
GGTGTCTTTTTGGAACCCAAAAAGTCCCTCTAAAGGGCAGGAAAAATTAA
AAATAAAAGCTCCAGTCCCTCAAAGGGTCGGGAAAATAGAATAATTTCAA
TTTTGAACCTCGAAACGAAAGATCGAAAATCGGTCAAATTAGTCCCAAAA
TAAAGTTTACGTATACAGTTGACGCTCTCTAATTCGACGTTCTACTATTC
GATAGGCTCCCTTATTCGATGAAATTTAAAGTTCCCGTCAACAAGAAACT
CTCATAAACGACGCTCTCTTATTTGATAAGCTCCCTTATTCGATGAAAAT
CCAATTCCCCTCGAAGATCGAATTAGAGAGCGTCAACTGTATTATCCTAC
GGTTTTCAAGAACTCTAGAATGTTAACTTTAATTTCCACTGCTCTTCCTT
TTTTTAGATCGTTCTCAACTCCATGCATAAATATCACATCCAACTAGTTA
TCAAACAAATCGGATTGGACGACCAAGTTCTCGACACAAAGAAATTCGAA
TTTAAAGAAACAGAATTCATAGCCGTTACGGCGTATCAAAATGATGACGT
CACTCAATTGAAGATCGATCATAACCCGTTCGCAAAGGCATTCAGAGATA
ACGCAAATGAGCATTGGTAAGATAATTAAGAGTGCAACATTTTTGGCGAT
TGTTCAAGAGTATTTTTCATTGTTGTTTTAGATTTGAGTGACCTAATGCT
CAAAGTGGACTATTTTTACGAACTGTTCGCCAGAACTTTTTAATTGATTT
AGTTTTAGATTTGAGAACTTTATTGCCACTTACGCCCTCTGAATGCTCAT
TTATATCATATAACTTTATCCAAGTTTATTCTCCTTCGTTTTTTTACAGT
GAACGATCACAATATACAGACATATACATGACCCAACCAAAACGTCGAAA
ATGTCAAAGCTACGATGAAGTCACAAACCAGACGACAAATCACGTGATGA
ACGACCCCATCTTGGTTGACAATAGCAACAACAACTCAAACACAACGAAT
GAAGCGACTTTCTCCCTTCCTTTAATGAACAACGAGAACCAATCAGTGAC
CGAGGAGGATAAGAACCGGCTACTTATGAACTTCAATAATGATACTAGTA
CAAGTAGCACTTCATATACCAATGCTTTAACAAACTTTTCAAGTTTCAAT
TGTAATTCGAACGATTATAATAATTCGATGAATTGGTTCCAACCAATTAA
CTTCGAATCACATGACATCGAGGAACAATCGAATCTTTTATCGACTCAAC
ATACACAATCGGAGCAAAACCTACACTCTAATGAAGTTTCAACAATAACG
AACGCATTTCATCCACAAAAATCTCCGACTCATCCTTCGAGTGAATCGAT
AGATAACGAACAGAAACCACGACAAACCGATATTGTTATTGATTTATCGA
AGTCTTATAAATCGGTTATGTGAAACGAAAGGTCTGGCGTTCAAAACAAC
ATCAGAGCAATTTCCGAAAGTTTGGGCGGATTTCTAGGTGCTGGTTATCA
TTCTAGGTAGTCGAAATTAGCTTTAGCATAGAATGCTTTAGATATGTAAC
ATATCCCAGAATAAGGTCGCAGAGCAGAATTCGATCGATAAGGGGTTATT
TCCACCACATCTTAGGCGATATTGAGTATTCAGTGACAGATCAAAATGAA
AGATTATTGTTCAACAGCGCAGAAAACAATAATTGCGTAGAAAAAAAAAG
ATCAATGAACCAAAAAGTAAATTAAGATATGAAATCACATTCCGCGTCTG
CAATTTTTTTTTCTTCTTTTTCCAAAAACTCCTCCCATAAAAAACGATTT
CAACATTCGAATTTCAGCGTCATCATAACATTACAAAAACGGACAATATA
TTTTTGCAACAGACCATAATTATTATGGTATTGTCATCATAATTGCTTAT
AGGCGGAGAAAAGGATCATTGATTACTCCCAGATATTTTTGCGATATTTT
CTTAATTTCTTGGATACACTCTTAAGTGAAGAAAAAACAAATCTTATATA
TTTGACTACTGGGAATTTTTAAGCCAGCCTCTGTTCATGTTTCAAGCTAA
TAGTTTGATTACCACCCCCCCCCTAAAATGTCGAATTCTATTGTATTTAA
TGCCTCGTTCTAAAGGTAGTAATTATAAATTGCATTGTTTATTGTTGTTT
TGTCATTATTATTATTTATTTGAGTATAGTTTTATTTATCAAAATAAATT
TGTGCATATTTTAGAAAGAGTATCATTTTGTTAATATTTATAAATGTCGT
TTAAAAGTAATATATTCAGCGAGAAATATAAA

Coding sequence (CDS) from alignment at scaffold_242:1731843..1737374-

>TCONS_00054433 ID=TCONS_00054433|Name=TCONS_00054433|organism=Clytia hemisphaerica|type=CDS|length=7455bp|location=Sequence derived from alignment at scaffold_242:1731843..1737374- (Clytia hemisphaerica)
TGAACGATCACAATATACAGACATATACATGACCCAACCAAAACGTCGAA
AATGTCAAAGCTACGATGAAGTCACAAACCAGACGACAAATCACGTGATG
AACGACCCCATCTTGGTTGACAATAGCAACAACAACTCAAACACAACGAA
TGAAGCGACTTTCTCCCTTCCTTTAATGAACAACGAGAACCAATCAGTGA
CCGAGGAGGATAAGAACCGGCTACTTATGAACTTCAATAATGATACTAGT
ACAAGTAGCACTTCATATACCAATGCTTTAACAAACTTTTCAAGTTTCAA
TTGTAATTCGAACGATTATAATAATTCGATGAATTGGTTCCAACCAATTA
ACTTCGAATCACATGACATCGAGGAACAATCGAATCTTTTATCGACTCAA
CATACACAATCGGAGCAAAACCTACACTCTAATGAAGTTTCAACAATAAC
GAACGCATTTCATCCACAAAAATCTCCGACTCATCCTTCGAGTGAATCGA
TAGATAACGAACAGAAACCACGACAAACCGATATTGTTATTGATTTATCG
AAGTCTTATAAATCGGTTATGTGAATCGTTCTCAACTCCATGCATAAATA
TCACATCCAACTAGTTATCAAACAAATCGGATTGGACGACCAAGTTCTCG
ACACAAAGAAATTCGAATTTAAAGAAACAGAATTCATAGCCGTTACGGCG
TATCAAAATGATGACGTCACTCAATTGAAGATCGATCATAACCCGTTCGC
AAAGGCATTCAGAGATAACGCAAATGAGCATTGGTAATAAACGCATGTAT
CATCCTGAAGGCATTCAAACAGGCGAATACTGGCAGAAGAATGGAGTGGC
TTTCAAAAGAATCAAGTTAACAAATAAGAAGACTGCTAAAGAAGGCTCTA
ATAATACGTATGTTTCCTGTACTGTCGTTTGGTGTCCACAGTTTGAATTT
CACAGACCTCTACACAATGGAAGTGGAAGTGATACCTTCTGATAACAATC
GTTACAAATACGTCAGTGTCACAGGCTGGAGAGTCAATGGCGTCGCTTCT
CAGCAAGAAGATGATTCCGAATTTTGAAAATAATAGCGCGCCAATGACTA
ATTCGTACGGTTATCAACCTGTGGCTTATGGTGAAAACGGCTTGCCGTAT
AATGAAATGGCATCGTCTCAACAGACAGACGGACAACAAAAAGAAGGACA
CAAGTATGCTACCGGCAATAAAACCTTACCGTATTACGGGAATTCCACAT
TCAAAGACCCAAATCCTTTTTTCTCTACTTTTCAACCGAACTTCCACCAG
CGATTTACACATTTCGGGGCATCGGGCTTGGGTTATTTTCCAAACCCATA
CTTGACTTCGTTTTATGATCGTATGCATGAGATGGAGGCTAAGATTCCAT
TAGAGTACGCCAGGGTGTGGTTGGATCATCAGACTTTGTGGAGAAGGTTC
AGTGTTTGCGGCAATGAGATGATTATCACTAAAATGGGAAGTGAACGATC
ACAATATACAGACATATACATGACCCAACCAAAACGTCGAAAATGTCAAA
GCTACGATGAAGTCACAAACCAGACGACAAATCACGTGATGAACGACCCC
ATCTTGGTTGACAATAGCAACAACAACTCAAACACAACGAATGAAGCGAC
TTTCTCCCTTCCTTTAATGAACAACGAGAACCAATCAGTGACCGAGGAGG
ATAAGAACCGGCTACTTATGAACTTCAATAATGATACTAGTACAAGTAGC
ACTTCATATACCAATGCTTTAACAAACTTTTCAAGTTTCAATTGTAATTC
GAACGATTATAATAATTCGATGAATTGGTTCCAACCAATTAACTTCGAAT
CACATGACATCGAGGAACAATCGAATCTTTTATCGACTCAACATACACAA
TCGGAGCAAAACCTACACTCTAATGAAGTTTCAACAATAACGAACGCATT
TCATCCACAAAAATCTCCGACTCATCCTTCGAGTGAATCGATAGATAACG
AACAGAAACCACGACAAACCGATATTGTTATTGATTTATCGAAGTCTTAT
AAATCGGTTATGTGAATCGTTCTCAACTCCATGCATAAATATCACATCCA
ACTAGTTATCAAACAAATCGGATTGGACGACCAAGTTCTCGACACAAAGA
AATTCGAATTTAAAGAAACAGAATTCATAGCCGTTACGGCGTATCAAAAT
GATGACGTCACTCAATTGAAGATCGATCATAACCCGTTCGCAAAGGCATT
CAGAGATAACGCAAATGAGCATTGGTAATAAACGCATGTATCATCCTGAA
GGCATTCAAACAGGCGAATACTGGCAGAAGAATGGAGTGGCTTTCAAAAG
AATCAAGTTAACAAATAAGAAGACTGCTAAAGAAGGCTCTAATAATACGT
ATGTTTCCTGTACTGTCGTTTGGTGTCCACAGTTTGAATTTCACAGACCT
CTACACAATGGAAGTGGAAGTGATACCTTCTGATAACAATCGTTACAAAT
ACGTCAGTGTCACAGGCTGGAGAGTCAATGGCGTCGCTTCTCAGCAAGAA
GATGATTCCGAATTTTGAAAATAATAGCGCGCCAATGACTAATTCGTACG
GTTATCAACCTGTGGCTTATGGTGAAAACGGCTTGCCGTATAATGAAATG
GCATCGTCTCAACAGACAGACGGACAACAAAAAGAAGGACACAAGTATGC
TACCGGCAATAAAACCTTACCGTATTACGGGAATTCCACATTCAAAGACC
CAAATCCTTTTTTCTCTACTTTTCAACCGAACTTCCACCAGCGATTTACA
CATTTCGGGGCATCGGGCTTGGGTTATTTTCCAAACCCATACTTGACTTC
GTTTTATGATCGTATGCATGAGATGGAGGCTAAGATTCCATTAGAGTACG
CCAGGGTGTGGTTGGATCATCAGACTTTGTGGAGAAGGTTCAGTGTTTGC
GGCAATGAGATGATTATCACTAAAATGGGAAGTGAACGATCACAATATAC
AGACATATACATGACCCAACCAAAACGTCGAAAATGTCAAAGCTACGATG
AAGTCACAAACCAGACGACAAATCACGTGATGAACGACCCCATCTTGGTT
GACAATAGCAACAACAACTCAAACACAACGAATGAAGCGACTTTCTCCCT
TCCTTTAATGAACAACGAGAACCAATCAGTGACCGAGGAGGATAAGAACC
GGCTACTTATGAACTTCAATAATGATACTAGTACAAGTAGCACTTCATAT
ACCAATGCTTTAACAAACTTTTCAAGTTTCAATTGTAATTCGAACGATTA
TAATAATTCGATGAATTGGTTCCAACCAATTAACTTCGAATCACATGACA
TCGAGGAACAATCGAATCTTTTATCGACTCAACATACACAATCGGAGCAA
AACCTACACTCTAATGAAGTTTCAACAATAACGAACGCATTTCATCCACA
AAAATCTCCGACTCATCCTTCGAGTGAATCGATAGATAACGAACAGAAAC
CACGACAAACCGATATTGTTATTGATTTATCGAAGTCTTATAAATCGGTT
ATGTGAATCGTTCTCAACTCCATGCATAAATATCACATCCAACTAGTTAT
CAAACAAATCGGATTGGACGACCAAGTTCTCGACACAAAGAAATTCGAAT
TTAAAGAAACAGAATTCATAGCCGTTACGGCGTATCAAAATGATGACGTC
ACTCAATTGAAGATCGATCATAACCCGTTCGCAAAGGCATTCAGAGATAA
CGCAAATGAGCATTGGTAATAAACGCATGTATCATCCTGAAGGCATTCAA
ACAGGCGAATACTGGCAGAAGAATGGAGTGGCTTTCAAAAGAATCAAGTT
AACAAATAAGAAGACTGCTAAAGAAGGCTCTAATAATACGTATGTTTCCT
GTACTGTCGTTTGGTGTCCACAGTTTGAATTTCACAGACCTCTACACAAT
GGAAGTGGAAGTGATACCTTCTGATAACAATCGTTACAAATACGTCAGTG
TCACAGGCTGGAGAGTCAATGGCGTCGCTTCTCAGCAAGAAGATGATTCC
GAATTTTGAAAATAATAGCGCGCCAATGACTAATTCGTACGGTTATCAAC
CTGTGGCTTATGGTGAAAACGGCTTGCCGTATAATGAAATGGCATCGTCT
CAACAGACAGACGGACAACAAAAAGAAGGACACAAGTATGCTACCGGCAA
TAAAACCTTACCGTATTACGGGAATTCCACATTCAAAGACCCAAATCCTT
TTTTCTCTACTTTTCAACCGAACTTCCACCAGCGATTTACACATTTCGGG
GCATCGGGCTTGGGTTATTTTCCAAACCCATACTTGACTTCGTTTTATGA
TCGTATGCATGAGATGGAGGCTAAGATTCCATTAGAGTACGCCAGGGTGT
GGTTGGATCATCAGACTTTGTGGAGAAGGTTCAGTGTTTGCGGCAATGAG
ATGATTATCACTAAAATGGGAAGTGAACGATCACAATATACAGACATATA
CATGACCCAACCAAAACGTCGAAAATGTCAAAGCTACGATGAAGTCACAA
ACCAGACGACAAATCACGTGATGAACGACCCCATCTTGGTTGACAATAGC
AACAACAACTCAAACACAACGAATGAAGCGACTTTCTCCCTTCCTTTAAT
GAACAACGAGAACCAATCAGTGACCGAGGAGGATAAGAACCGGCTACTTA
TGAACTTCAATAATGATACTAGTACAAGTAGCACTTCATATACCAATGCT
TTAACAAACTTTTCAAGTTTCAATTGTAATTCGAACGATTATAATAATTC
GATGAATTGGTTCCAACCAATTAACTTCGAATCACATGACATCGAGGAAC
AATCGAATCTTTTATCGACTCAACATACACAATCGGAGCAAAACCTACAC
TCTAATGAAGTTTCAACAATAACGAACGCATTTCATCCACAAAAATCTCC
GACTCATCCTTCGAGTGAATCGATAGATAACGAACAGAAACCACGACAAA
CCGATATTGTTATTGATTTATCGAAGTCTTATAAATCGGTTATGTGAATC
GTTCTCAACTCCATGCATAAATATCACATCCAACTAGTTATCAAACAAAT
CGGATTGGACGACCAAGTTCTCGACACAAAGAAATTCGAATTTAAAGAAA
CAGAATTCATAGCCGTTACGGCGTATCAAAATGATGACGTCACTCAATTG
AAGATCGATCATAACCCGTTCGCAAAGGCATTCAGAGATAACGCAAATGA
GCATTGGTAATAAACGCATGTATCATCCTGAAGGCATTCAAACAGGCGAA
TACTGGCAGAAGAATGGAGTGGCTTTCAAAAGAATCAAGTTAACAAATAA
GAAGACTGCTAAAGAAGGCTCTAATAATACGTATGTTTCCTGTACTGTCG
TTTGGTGTCCACAGTTTGAATTTCACAGACCTCTACACAATGGAAGTGGA
AGTGATACCTTCTGATAACAATCGTTACAAATACGTCAGTGTCACAGGCT
GGAGAGTCAATGGCGTCGCTTCTCAGCAAGAAGATGATTCCGAATTTTGA
AAATAATAGCGCGCCAATGACTAATTCGTACGGTTATCAACCTGTGGCTT
ATGGTGAAAACGGCTTGCCGTATAATGAAATGGCATCGTCTCAACAGACA
GACGGACAACAAAAAGAAGGACACAAGTATGCTACCGGCAATAAAACCTT
ACCGTATTACGGGAATTCCACATTCAAAGACCCAAATCCTTTTTTCTCTA
CTTTTCAACCGAACTTCCACCAGCGATTTACACATTTCGGGGCATCGGGC
TTGGGTTATTTTCCAAACCCATACTTGACTTCGTTTTATGATCGTATGCA
TGAGATGGAGGCTAAGATTCCATTAGAGTACGCCAGGGTGTGGTTGGATC
ATCAGACTTTGTGGAGAAGGTTCAGTGTTTGCGGCAATGAGATGATTATC
ACTAAAATGGGAAGTGAACGATCACAATATACAGACATATACATGACCCA
ACCAAAACGTCGAAAATGTCAAAGCTACGATGAAGTCACAAACCAGACGA
CAAATCACGTGATGAACGACCCCATCTTGGTTGACAATAGCAACAACAAC
TCAAACACAACGAATGAAGCGACTTTCTCCCTTCCTTTAATGAACAACGA
GAACCAATCAGTGACCGAGGAGGATAAGAACCGGCTACTTATGAACTTCA
ATAATGATACTAGTACAAGTAGCACTTCATATACCAATGCTTTAACAAAC
TTTTCAAGTTTCAATTGTAATTCGAACGATTATAATAATTCGATGAATTG
GTTCCAACCAATTAACTTCGAATCACATGACATCGAGGAACAATCGAATC
TTTTATCGACTCAACATACACAATCGGAGCAAAACCTACACTCTAATGAA
GTTTCAACAATAACGAACGCATTTCATCCACAAAAATCTCCGACTCATCC
TTCGAGTGAATCGATAGATAACGAACAGAAACCACGACAAACCGATATTG
TTATTGATTTATCGAAGTCTTATAAATCGGTTATGTGAATCGTTCTCAAC
TCCATGCATAAATATCACATCCAACTAGTTATCAAACAAATCGGATTGGA
CGACCAAGTTCTCGACACAAAGAAATTCGAATTTAAAGAAACAGAATTCA
TAGCCGTTACGGCGTATCAAAATGATGACGTCACTCAATTGAAGATCGAT
CATAACCCGTTCGCAAAGGCATTCAGAGATAACGCAAATGAGCATTGGTA
ATAAACGCATGTATCATCCTGAAGGCATTCAAACAGGCGAATACTGGCAG
AAGAATGGAGTGGCTTTCAAAAGAATCAAGTTAACAAATAAGAAGACTGC
TAAAGAAGGCTCTAATAATACGTATGTTTCCTGTACTGTCGTTTGGTGTC
CACAGTTTGAATTTCACAGACCTCTACACAATGGAAGTGGAAGTGATACC
TTCTGATAACAATCGTTACAAATACGTCAGTGTCACAGGCTGGAGAGTCA
ATGGCGTCGCTTCTCAGCAAGAAGATGATTCCGAATTTTGAAAATAATAG
CGCGCCAATGACTAATTCGTACGGTTATCAACCTGTGGCTTATGGTGAAA
ACGGCTTGCCGTATAATGAAATGGCATCGTCTCAACAGACAGACGGACAA
CAAAAAGAAGGACACAAGTATGCTACCGGCAATAAAACCTTACCGTATTA
CGGGAATTCCACATTCAAAGACCCAAATCCTTTTTTCTCTACTTTTCAAC
CGAACTTCCACCAGCGATTTACACATTTCGGGGCATCGGGCTTGGGTTAT
TTTCCAAACCCATACTTGACTTCGTTTTATGATCGTATGCATGAGATGGA
GGCTAAGATTCCATTAGAGTACGCCAGGGTGTGGTTGGATCATCAGACTT
TGTGGAGAAGGTTCAGTGTTTGCGGCAATGAGATGATTATCACTAAAATG
GGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034303XLOC_034303Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054433-exon-scaffold_242-1575043694:1736682..1737374TCONS_00054433-exon-scaffold_242-1575043694:1736682..1737374Clytia hemisphaericaexon
TCONS_00054433-exon-scaffold_242-1575043694:1735680..1735834TCONS_00054433-exon-scaffold_242-1575043694:1735680..1735834Clytia hemisphaericaexon
TCONS_00054433-exon-scaffold_242-1575043694:1734284..1734405TCONS_00054433-exon-scaffold_242-1575043694:1734284..1734405Clytia hemisphaericaexon
TCONS_00054433-exon-scaffold_242-1575043694:1733509..1733717TCONS_00054433-exon-scaffold_242-1575043694:1733509..1733717Clytia hemisphaericaexon
TCONS_00054433-exon-scaffold_242-1575043694:1731843..1733275TCONS_00054433-exon-scaffold_242-1575043694:1731843..1733275Clytia hemisphaericaexon
TCONS_00054433-exon-scaffold_242-1510915933:1736682..1737374TCONS_00054433-exon-scaffold_242-1510915933:1736682..1737374Clytia hemisphaericaexon
TCONS_00054433-exon-scaffold_242-1510915933:1735680..1735834TCONS_00054433-exon-scaffold_242-1510915933:1735680..1735834Clytia hemisphaericaexon
TCONS_00054433-exon-scaffold_242-1510915933:1734284..1734405TCONS_00054433-exon-scaffold_242-1510915933:1734284..1734405Clytia hemisphaericaexon
TCONS_00054433-exon-scaffold_242-1510915933:1733509..1733717TCONS_00054433-exon-scaffold_242-1510915933:1733509..1733717Clytia hemisphaericaexon
TCONS_00054433-exon-scaffold_242-1510915933:1731843..1733275TCONS_00054433-exon-scaffold_242-1510915933:1731843..1733275Clytia hemisphaericaexon
TCONS_00054433-exon-scaffold_242-1491911889:1736682..1737374TCONS_00054433-exon-scaffold_242-1491911889:1736682..1737374Clytia hemisphaericaexon
TCONS_00054433-exon-scaffold_242-1491911889:1735680..1735834TCONS_00054433-exon-scaffold_242-1491911889:1735680..1735834Clytia hemisphaericaexon
TCONS_00054433-exon-scaffold_242-1491911889:1734284..1734405TCONS_00054433-exon-scaffold_242-1491911889:1734284..1734405Clytia hemisphaericaexon
TCONS_00054433-exon-scaffold_242-1491911889:1733509..1733717TCONS_00054433-exon-scaffold_242-1491911889:1733509..1733717Clytia hemisphaericaexon
TCONS_00054433-exon-scaffold_242-1491911889:1731843..1733275TCONS_00054433-exon-scaffold_242-1491911889:1731843..1733275Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Tbx transcription factorTCONS_00054433-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1731843..1737374 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.147929	0.288577	0.43523	0.310735	44.0907	40.7737	127.208	135.264	42.589	38.8762	28.4953	60.7276	0.13309	0.125279	0.0514377	0.120329	0.0897792	0.126587	0.178031	0.0710085	0.114533	0.0418258	0.0339368	0.0618645	0.11113	0.0991692	0.041646	0.065683	0.0990309	0.0839827
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001699TF_T-box
IPR018186TF_T-box_CS
IPR008967p53-like_TF_DNA-bd
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
[Close]
BLAST of TCONS_00054433 vs. Swiss-Prot (Human)
Match: EOMES (Eomesodermin homolog OS=Homo sapiens GN=EOMES PE=1 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 2.893e-40
Identity = 91/192 (47.40%), Postives = 122/192 (63.54%), Query Frame = 2 
Query:  611 ARVWLDHQTLWRRFSVCGNEMIITKMGRRMFPVLSFGVHSLNFTDLYTMEVEVIPSDNNRYKYVSVTGWRVNGVA-SQQEGNKRMYHPEGIQTGEYWQKNGVAFKRIKLTNKKTAKEGSNN-IVLNSMHKYHIQLVIKQI---GLDD--QVLDTKKFEFKETEFIAVTAYQNDDVTQLKIDHNPFAKAFRDN 1165
            A V+L ++ LW +F     EMIITK GRRMFP LSF ++ LN T  Y + VEV+ +D N +++     W   G A +  +GNK   HPE   TG +W +  ++F ++KLTN K A   +   IVL S+HKY  +L I ++   G++D  +   T+ F F ET+FIAVTAYQN D+TQLKIDHNPFAK FRDN
Sbjct:  267 AHVYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNINGLNPTAHYNVFVEVVLADPNHWRFQGGK-WVTCGKADNNMQGNKMYVHPESPNTGSHWMRQEISFGKLKLTNNKGANNNNTQMIVLQSLHKYQPRLHIVEVTEDGVEDLNEPSKTQTFTFSETQFIAVTAYQNTDITQLKIDHNPFAKGFRDN 457
The following BLAST results are available for this feature:
BLAST of TCONS_00054433 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EOMES2.893e-4047.40Eomesodermin homolog OS=Homo sapiens GN=EOMES PE=1... [more]
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