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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054430 ID=TCONS_00054430|Name=TCONS_00054430|organism=Clytia hemisphaerica|type=transcript|length=2609bpRun BLAST on NCBI protein sequence of TCONS_00054430-protein >TCONS_00054430-protein ID=TCONS_00054430-protein|Name=TCONS_00054430-protein|organism=Clytia hemisphaerica|type=polypeptide|length=695bp MSSSNTLNSDNFAKQQLRKISTSLKGAKRFGSESDLLDDSGSNKFFSVQYRun BLAST on NCBI transcript from alignment at scaffold_242:1707930..1722530- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054430 ID=TCONS_00054430|Name=TCONS_00054430|organism=Clytia hemisphaerica|type=transcript|length=14601bp|location=Sequence derived from alignment at scaffold_242:1707930..1722530- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_242:1707930..1722530- >TCONS_00054430 ID=TCONS_00054430|Name=TCONS_00054430|organism=Clytia hemisphaerica|type=CDS|length=27144bp|location=Sequence derived from alignment at scaffold_242:1707930..1722530- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054430 vs. Swiss-Prot (Human)
Match: PKHG5 (Pleckstrin homology domain-containing family G member 5 OS=Homo sapiens GN=PLEKHG5 PE=1 SV=3) HSP 1 Score: 259.996 bits (663), Expect = 9.970e-73 Identity = 130/357 (36.41%), Postives = 213/357 (59.66%), Query Frame = 1
Query: 616 NRDFYLESSWKDVVDGNEEMERHDRVQQEAIWELITTEKTYIADLRVVTEVFKKCFSRLKDDGFLTDVDPFLIFANIDEIHDLNVEFW-KLLITVVENSRKSRQPIKPSDLINAFDRFEVLFQPYITFCNHDTSNINLPNYTDAVNEQVKEYFMWCDDHPRCKRIKLQGFLIKPLQRVTKYSLLIRAVEGKTQNEDEKEMLGKMRNRVETFVSKINSAVHMRQEHEKMLAVLARLETYAPVEAVNEEAEKIMNEYSSLDLKGNIPDFPLERKRLIVKEGPMRLVE-KQVKKEVQGYLFSDVFVLARPKKNTDKYKVIRQPFRLDKTVIRVLKDAGSFLVIYLNEYNVMSNAFVLQIN 1680
N LE SW++++DG+E++ R QQEA+WEL+ TE +YI LRV+ +F C L++ G L +V+ +F+NI EI L+ W ++ V+E +R++R ++P D + F F LF+PYI +C + + N+ + Y W + HP+C+R+KL L KP QR+TKY LL+++V KT+ KE + M VE F+ +N+ + RQE +++ AV++R++ Y VE+ ++E +K++ E+ LDL IP E R ++ EG +R+ E K K +V +LF+D+ ++ + K ++ +VIR P +DK V R L+D GSFL+IYLNE++ A+ Q +
Sbjct: 367 NACLRLEDSWRELIDGHEKLTRRQCHQQEAVWELLHTEASYIRKLRVIINLFLCCLLNLQESGLLCEVEAERLFSNIPEIAQLHRRLWASVMAPVLEKARRTRALLQPGDFLKGFKMFGSLFKPYIRYCMEEEGCMEYMRGLLRDNDLFRAYITWAEKHPQCQRLKLSDMLAKPHQRLTKYPLLLKSVLRKTEEPRAKEAVVAMIGSVERFIHHVNACMRQRQERQRLAAVVSRIDAYEVVESSSDEVDKLLKEFLHLDLTAPIPGASPEETRQLLLEGSLRMKEGKDSKMDVYCFLFTDLLLVTKAVKKAERTRVIRPPLLVDKIVCRELRDPGSFLLIYLNEFHSAVGAYTFQAS 723 The following BLAST results are available for this feature:
BLAST of TCONS_00054430 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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