TCONS_00054425 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054425
Unique NameTCONS_00054425
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054425 ID=TCONS_00054425|Name=TCONS_00054425|organism=Clytia hemisphaerica|type=transcript|length=378bp
TGCATGGAAGAAAGTCACCGATGCTTTCGAAAAAGCTGGAGACAAGATTA
GCAACCAAACCAGAGCTTTGATCGAGAAATACAAACCAAAAGTAACAGAT
GCTTTGACCAGAGTCAAGAAAGTGATCATTGACGAGGGAAAGAGAATCGT
TATTGAAATCATCGGAGATATTGTCAAGATTGTTGTTGAAGATCTTCAAG
AGGATGAGATTGTTAAAGAACTTGCTGCTCTTTCAGAAGATTCTGAATTG
ATGGATGCTGAATTCTTTTTCTCTGAATTATGGGAAAAGGTGAAAACTGC
AGCCAACAGATTGGTCGATTCAGtaaaagcaacaaaacaaaaaatcatcg
AACAATACAAACCTCAAATCCTTGCTGC
Run BLAST on NCBI

transcript from alignment at scaffold_242:1605389..1608773-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054425 ID=TCONS_00054425|Name=TCONS_00054425|organism=Clytia hemisphaerica|type=transcript|length=3385bp|location=Sequence derived from alignment at scaffold_242:1605389..1608773- (Clytia hemisphaerica)
TGGTAAGTTATTTTGACGATTCAAACTTGTTTTCCTGTTTGTCTCTGTAA
TAAAGAAAATAATCAAAATAGATCAATTGCAAATACCTTTTTCAAAATCA
TATAATATTAATTCCATGTTCAAATTTCAGCATGGAAGAAAGTCACCGAT
GCTTTCGAAAAAGCTGGAGACAAGATTAGCAACCAAACCAGAGCTTTGGT
CGAGAAATACAAACCAAAAGTAACAGATGCTTTGACCAGAGTCAAGAAAG
TGATCATTGACGAGGGAAAAAGAATCGTTATTGAAATCATTGGTGATATT
GTCAAGATTGTTGTTGAAGATCTTCAAGAGGATGAGATTGTTAGAGAGCT
TGCTGCTCTTCCAGAAGATTCTGAATTGATGGATGCTGAATTCTTCTTCT
CTGAATGTAAGATAATATTTTATTCACAAAAACACAAATCCTATCCGGGG
TCTAAGATTACTCAAATAATTCCGGTTTTTAAAGAGCCAAAAAAACTTTC
TCAATTAGAAAACGTTATAGTAGTCTTGAAAACCTTTCAAATAAATCTCT
ATCAATTTTCTCTTTAGTATGGGAAAAGGTGAAAACTGCAGCCAACAGCT
TGGTCGATTCAGTAAAAGCAACAACACAAAAAATCATCGAACAATACAAA
CCTCAAATACTTGCTGCTTTGGAAAATGTCCAGAAAGTTATCATCAAAGG
AGCAAAAGATTTGATCATCGAAGTTGTCAATGGAATTGTCAAAATCATTA
CTGATGGTGTATCTTCAACATCAGATGGCAAAGATCACCCAGAGTTTGCT
GTTGTCTCATTTTCAATCTATGAAGAAATTGATAGCTCTTCCATTCCAAG
AATCAATTTTGTTACCGATGGTAAGTTATTTTGACGATTCAAACTTGTTT
TCCTGTTAGTCTCTGTAATAAAGAAAATAATCAAAATAGATAAATTGCAA
ATACCTTTTTCAAAATCATAATACTAATTTCATCTTCAAATTTCAGCATG
GAAGAAAGTCACTGATGCTTTCGAAAAAGCTGGAGACAAGATTAGCAACC
AAACCAGAGCTTTGATCGAGAAATATAAACCAAAAGTAACAGATGCTTTG
ACCAGAGTCAAGAAAGTGATCATTGACGAGGGAAAGAGAATCGTTATTGA
AATCATTGGTGATATTGTCAAGATTGTTGTTGAAGATCTTCAAGAGGATG
AGATTGTTAGAGAGCTTGCTGCTCTTTCAGAAGATTCTGAATTGATGGAT
GCTGAATTCTTCTTCTCTGAATGTAAGATAATATTTTATTCACAAAAACA
CAAATCCTGCTCTCTTGATCTAAAGTTATTAGAATTACTCCGATTTTAAA
GAGCCAAAAAAACATTCCCAATGAGAAAAAATTATAGTAGTCTTGAAAAC
CTTTCAAAGAAATCTCTATCAATTTTCTCTTTAGTATGGGAAAAGGTGAA
ATCTGCAGCTAACAGATTGATCGACTCAGTAAAAGCAACAACACAAAAAA
TCATCGAACAGTACAAACCTCAAATCCTTGCTGCTTTGGAAAATGTCCAA
AAAGTTGTCATCAAAGGAGCAAAAGATTTGATCATCGAAGTTGTCAATGG
AATTGTCAAAATCATTACTGATGGTGTATCTTCAACATCAGATGGCAAAG
ATCACCCAGAGTTTGCTGTTGTCTCATTTTCAATCTATGAAGAAATTGAT
AGCTCTTCCATTCCAAGAATCAATTTTGTTACCGATGGTAAGTTATTTTG
ACGATTCGAACTTGTTTTCCTGTTAGTCTCTGTAATAAAGAAAATAATCA
AAATAGATCAATTGCAAATACCTTTTTCAAAATCATAATATTAATTTCAT
CTTCAAATTTCAGCATGGAAGAAAGTCACCGATGCTTTCGAAAAAGCTGG
AGACAAGATTAGCAACCAAACCAGAGCTTTGATCGAGAAATACAAACCAA
AAGTAACAGATGCTTTGACCAGAGTCAAGAAAGTGATCATTGACGAGGGA
AAGAGAATCGTTATTGAAATCATCGGAGATATTGTCAAGATTGTTGTTGA
AGATCTTCAAGAGGATGAGATTGTTAAAGAACTTGCTGCTCTTTCAGAAG
ATTCTGAATTGATGGATGCTGAATTCTTTTTCTCTGAATGTAAGATAATA
TTTTATTCACAAAAACACAAATCCTATCCGGGGTCTAATATTTCTCAAAT
AATTCCGGTTTTTAAAGAGCCAAAAAAACTTTCCCAATGAGAAAACGTTA
TAGTAGTCTTTAAAACCTTTCAAAGAAATCTCTATCAATTTTCTCTTTAG
TATGGGAAAAGGTGAAAGCTGCAGCCAACAGCTTGGTCGATTCAGTAAAA
GCTACAACACAAAAAATCATCGAACAATACAAACCTCAAATCCTTGCTGC
TTTGGAAAATGTCCAAAAAGTTGTCATCAAAGGAGTCAAAGATTTGATCA
TCGAAGTTGTCAATGGAATTGTCAAAATCATTACTGATGGTGTATCTTCA
ACATCAGATGGCAAAGACCATCCAGAGTTTGCTATTGTCTCATTTTCAAT
CTTTGAAGAGATTGATGGCTCTTCCATTCCAAGAATCAACTTTGTTACTG
ATGGTAAGTTATTTTGACGATTCAAACTTGTTTTCCTGTTTGTCTGTGTA
ATAAAGAAAATAATCAAAATAGATCAATTGCAAATACCTTTTTCAAAATC
ATATAATATTAATTCCATCTTCAAATTTCAGCATGGAAAAAAGTCACTGA
TGCTTTCGAAAAAGCTGGAGACAAGATTAGCAACCAAACCAGAGCTTTGA
TCGAGAAATATAAACCAAAAGTAACAGATGCTTTGACCAGAGTCAAGAAA
GTGATCATTGACGAGGGAAAGAGAATCGTTATTGAAATCATTGGTGATAT
TGTCAAGATTGTTGTTGAAGATCTTCAAGAGGATGAGATTGTTAGAGAGC
TTGCTGCTCTTTCAGAAGATTCTGAATTGATGGATGCTGAATTCTTCTTC
TCTGAATGTAAGANGATATTGTCAAGATTGTTGTTGAAGATCTTCAAGAG
GATGAGATTGTTAAAGAACTTGCTGCTCTTTCCGAAGATTCTGAATTGAT
GGATGCTGAATTCTTCTTCTCTGAATGTAAGATAATATTTTATTCACAAA
AACACAAATTCTATCCGGGTTCTGTTCTCTTAAATAATTCCGGTTTTTAA
AGAGCCAAAAAAACTTTCCCAATGAGAAAACGTTATAGTAGCCTTGAAAA
CCTTTCAAAGAAATCTCTATCAATTTTCTCTTTAGTATGGGAAAAGGTGA
AAACTGCAGCCAACAGATTGGTCGATTCAGTAAAAGCAACAAAACAAAAA
ATCATCGAACAATACAAACCTCAAATCCTTGCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034299XLOC_034299Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054425-exon-scaffold_242-1575043694:1608772..1608773TCONS_00054425-exon-scaffold_242-1575043694:1608772..1608773Clytia hemisphaericaexon
TCONS_00054425-exon-scaffold_242-1575043694:1606635..1606910TCONS_00054425-exon-scaffold_242-1575043694:1606635..1606910Clytia hemisphaericaexon
TCONS_00054425-exon-scaffold_242-1575043694:1605389..1605488TCONS_00054425-exon-scaffold_242-1575043694:1605389..1605488Clytia hemisphaericaexon
TCONS_00054425-exon-scaffold_242-1510915933:1608772..1608773TCONS_00054425-exon-scaffold_242-1510915933:1608772..1608773Clytia hemisphaericaexon
TCONS_00054425-exon-scaffold_242-1510915933:1606635..1606910TCONS_00054425-exon-scaffold_242-1510915933:1606635..1606910Clytia hemisphaericaexon
TCONS_00054425-exon-scaffold_242-1510915933:1605389..1605488TCONS_00054425-exon-scaffold_242-1510915933:1605389..1605488Clytia hemisphaericaexon
TCONS_00054425-exon-scaffold_242-1491911889:1608772..1608773TCONS_00054425-exon-scaffold_242-1491911889:1608772..1608773Clytia hemisphaericaexon
TCONS_00054425-exon-scaffold_242-1491911889:1606635..1606910TCONS_00054425-exon-scaffold_242-1491911889:1606635..1606910Clytia hemisphaericaexon
TCONS_00054425-exon-scaffold_242-1491911889:1605389..1605488TCONS_00054425-exon-scaffold_242-1491911889:1605389..1605488Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1605389..1608773 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.385929	0	0	0	0	4.57038	0	0	0	0.262779	13.9552	0	24.6361	0	0	0	0	0	0.33187
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054425 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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