|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054399 ID=TCONS_00054399|Name=TCONS_00054399|organism=Clytia hemisphaerica|type=transcript|length=1247bp
TTAAACTATTCTATTTTGTTCACGgttactttttctttgaaaatactaAT
ACAAttgcaatatttttccaaaaagtttcgTTTCCATAATTGCTTGCTTA
AAAAGCAGTTGAATATCTGTTAACTTCGTGATTCGAATTATAATAAGTTG
AGAAATTAATGGTCACTGATGCGTCACTGCAATCCATCTCAGCACCAAAA
TTTCGTTTCTTTTTCAAACGTCCCAGAAAGAATCTTTTCAGATCTCGTTT
AACGTCTTTACTTAGCCAACCATAAATCAATGGATCCAAAATATTGTTCA
AACATATCAAATGGCAAGctacaaattgaaaatttcctgCAACTTGTTTC
CCTAATAAGTCATGCATGAACCATATCAAACATGGCGACCAGCATAACTC
AAAACTTAACACAATTCCTATACAAATACACACCAATCGATATTGTCGAC
GTAAAAGTTGTCTTTTACGATTCTTATTACGACTTACACCAGCAATACTT
CGTAACTGTCTACGAGCTTCGCCATAAATAATGTAATTAACAGTATTTAG
GACCAAAAACCCACTCATAATAACACTGACGAATGATATCTGTAGGGCCA
ACATGACAGTTTTCATAGGTAGATATAAATAGCAAACTAGAAGTGCTATG
AAATAAGTTAAAGCTATTGCCAATGTGACACCAACAATGATAAAGAAAAC
TTTAGTAGTGAATTTTTCTTTGTAGAAAAAGGGTTTCTTGATGGCCAACA
AGCGATCCAGTGTCACAGCCATTCGATTGATTAAAGATAAAATCATAGAC
GTCACAACGATAATGTAAAAAATCACCTCCTCATCCATCAGTACATGAGT
TAGTTGTAAATTCGCTCTGTGCTCGTGATTATGGATGTGAAATAGCGCAA
GTGCTGCATACCCGACCATTGAAAATGAAGCAAAGCAATTTGCCATGAAA
AGGTTCACCAAAAATTTATTCGAAATCCGACGTAACAGACGTTTTTGACG
GATTATGACTAAGATAGCGACAAGAGTTAATAGAGTTCCAATGCTAGGCT
GGATTGTCATGACAACGAAATGGGTGAGGTTTGACGTGTCCGTGTTTAAA
CTATTGTTATGGTGGCCCATTGTTgtattgtttttgttgaattGATATAC
ATTGTTTTGATATACTGTCCAATTGTTGCCACCAGTAATGTTGTTGGTAC
TTTGCATCGTTTTTATATTGATTCTATTTGTTTTTctagtttcacta Run BLAST on NCBI transcript from alignment at scaffold_242:1407867..1410811- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054399 ID=TCONS_00054399|Name=TCONS_00054399|organism=Clytia hemisphaerica|type=transcript|length=2945bp|location=Sequence derived from alignment at scaffold_242:1407867..1410811- (Clytia hemisphaerica)
TTAAACTATTCTATTTTGTTCACGGTTACTTTTTCTTTGAAAATACTAAT
ACAATTGCAATATTTTTCCAAAAAGTTTCGTTTCCATAATTGCTTGCTTA
AAAAGCAGTTGAATATCTGTTAACTTCGTGATTCGAATTATAATAAGTTG
AGAAATTAATGGTCACTGATGCGTCACTGCAATCCATCTCAGCACCAAAA
TTTCGTTTCTTTTTCAAACGTCCCAGAAAGAATCTTTTCAGATCTCGTTT
AACGTCTTTACTTAGCCAACCATAAATCAATGGATCCAAAATATTGTTCA
AACATATCAAATGGCAAGCTACAAATTGAAAATTTCCTGCAACTTGTTTC
CCTAATAAGTCATGCATGAACCATATCAAACATGGCGACCAACATAACTC
GAAACTTAACACAATCCCTATACAAATACACACCAATCGATATTCTCGAC
GTAAAAGCTGTTTTTTACGATTTTTATTACCACTTACACCAGCAATAGCT
CGTAACTGTCTACGAGCTTCGCGATAAATAATGTAATTAACAGTATTTAG
GACCAAAAACCCACTCATAATAACACTGACGAATGATATCTGTAGGGCCA
ACATGACAGTTTTCATAGGTAGATATAAATAGCAAACTAGAAGTGCTATG
AAATAAGTTAAAGCTATTGCCAATGTGACACCAACAATGATAAAGAAAAC
TTTAGTAGTGAATTTTTCTTTGTAGAAAAAGGGTTTCTTGATGGCCAACA
AGCGATCCAGTGTCACAGCCATTCGATTGATTAAAGATAAAATCATAGAC
GTCACAACGATAATGTAAAAAATCACCTCCTCATCCATCAGTACATGAGT
TAGTTGTAAATTCGCTCTGTGCTCGTGATTATGGATGTGAAATAGCGCAA
GTGCTGCATACCCGACCATTGAAAATGAAGCAAAGCAATTTGCCATGAAA
AGGTTCACCAAAAATTTATTCGAAATCCGACGTAATAGACCTTTTTGATG
GATTATGACAAAAATAGCGACGAGAGTTAATAGAGTTCCAATGCTAGGCT
GGATTGTCATAACAACGAAATGGGTGAGGTTTGACGTGTCCCCGTTGAAA
CTTTTGTTATGGTGGCTCATTGTTGTATTGTTTTTGTTGAATTGTTATAC
ATTGTTTTGATATATTGTCCAATTGTTGCCAACAGTAATGTTGTTGGTAC
TTTGCATCGTTTTTATCATGATTCTATTTTATTTTTATAATTTCACTATT
ATATAAGAATTTTTAGGGGTCTGGTAAAGCGAGAGATCATATTTTGTACA
ATTTTATTATAAGAAAGGTTTTCTCTTCGTTTCCAATACACAAGAACTTA
TCAAAAGAGTTTATGAAAATAATGTTGTGATCTTTTAAATGACCATTCGA
TTGTCGAATTCGACATGTTGATTTCATCTAAATAAAAGTAAAAGAATAAA
ATATTGGAAGAGAAAAACGAAACAAAGAGAGACACAAATGAACCGAGGAA
AAGTTTGTTTGACATTTTCAAGTTGATGATTAACCAGTTATCACACTTTT
ACTCGTACAATATTGGATATATTTTTCTCGTTCAAAGTCTTCTATATTTT
CTATATTTGACAAAATATGACGAAAAATCTGAGCTCGGAAACTATTTCCC
ATATTGTACTCTGTACCGTCTGTTAATTATTACATATTTTTAACTGTANT
TTTTGCCATCGAAACCTCATGTTCTTATATTGTTTGTTCTTCAAAAAAAC
GTGAAAATTGTAAAGTCTCGATTCCATGGTTGGTTGCTTAAAAAGCAGTT
GTAACTGAATATCTGTTGACTTCGTGATTCGAATTATAATAAGTTGAGGA
GTTAGTCGTCACTGGTGCGTCACTGCAACCCATTTCAGCACCAAAATTTC
GTTTCTTTTTCAAACGTCCTAGAAAGCGTCTTTTCAGAGATCGTTTATAA
CGTCTTTACTTAACCAACCATAAATCAATGGATCCAAAATATTGTTCAAA
CATATCAAATGACAAGCTACAAATTGAAAATGTTCTACCACGTGTTTCCC
TAATAAATCGTGCATGAACCATATCAAACATGGCGACCAGCATAACTCAA
AACTTAACACAATTCCTATACAAATACACACCAATCGATATTGTCGACGT
AAAAGTTGTCTTTTACGATTCTTATTACGACTTACACCAGCAATACTTCG
TAACTGTCTACGAGCTTCGCCATAAATAATGTAATTAACAGTATTTAGGA
CCAAAAACCCACTCATAATAACACTGACGAATGATATCTGTAGGGCCAAC
ATGACAGTTTTCATAGGTAGATATAAATAGCAAACTAGAAGTGCTATGAA
ATAAGTTAAAGCTATTGCCAATGTGACACCAACAATGATAAAGAAAACTT
TAGTAGTGAATTTTTCTTTGTAGAAAAAGGGTTTCTTGATGGCCAACAAG
CGATCCAGTGTCACAGCCATTCGATTGATTAAAGATAAAATCATAGACGT
CACAACGATAATGTAAAAAATCACCTCCTCATCCATCAGTACATGAGTTA
GTTGTAAATTCGCTCTGTGCTCGTGATTATGGATGTGAAATAGCGCAAGT
GCTGCATACCCGACCATTGAAAATGAAGCAAAGCAATTTGCCATGAAAAG
GTTCACCAAAAATTTATTCGAAATCCGACGTAACAGACGTTTTTGACGGA
TTATGACTAAGATAGCGACAAGAGTTAATAGAGTTCCAATGCTAGGCTGG
ATTGTCATGACAACGAAATGGGTGAGGTTTGACGTGTCCGTGTTTAAACT
ATTGTTATGGTGGCCCATTGTTGTATTGTTTTTGTTGAATTGATATACAT
TGTTTTGATATACTGTCCAATTGTTGCCACCAGTAATGTTGTTGGTACTT
TGCATCGTTTTTATATTGATTCTATTTGTTTTTCTAGTTTCACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054399-exon-scaffold_242-1575043694:1410431..1410811 | TCONS_00054399-exon-scaffold_242-1575043694:1410431..1410811 | Clytia hemisphaerica | exon |
| TCONS_00054399-exon-scaffold_242-1575043694:1407867..1408732 | TCONS_00054399-exon-scaffold_242-1575043694:1407867..1408732 | Clytia hemisphaerica | exon |
| TCONS_00054399-exon-scaffold_242-1510915933:1410431..1410811 | TCONS_00054399-exon-scaffold_242-1510915933:1410431..1410811 | Clytia hemisphaerica | exon |
| TCONS_00054399-exon-scaffold_242-1510915933:1407867..1408732 | TCONS_00054399-exon-scaffold_242-1510915933:1407867..1408732 | Clytia hemisphaerica | exon |
| TCONS_00054399-exon-scaffold_242-1491911889:1410431..1410811 | TCONS_00054399-exon-scaffold_242-1491911889:1410431..1410811 | Clytia hemisphaerica | exon |
| TCONS_00054399-exon-scaffold_242-1491911889:1407867..1408732 | TCONS_00054399-exon-scaffold_242-1491911889:1407867..1408732 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1407867..1410811 - |
Blast
The following BLAST results are available for this feature:
|
