TCONS_00054388 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054388
Unique NameTCONS_00054388
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length742

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054388 ID=TCONS_00054388|Name=TCONS_00054388|organism=Clytia hemisphaerica|type=transcript|length=742bp
CTTGAGATCATATTGTCAAATGATTATTTGTATCCATTTCTTGGGGAGAG
TATATCTAACACTGTGAAATAATCTAAACCGTAAATGACCAGCTCGAAGA
ATAAAGCTCTTCTTTGTGTATCATTGTGTATAGTAACATATATCATtcac
aatgaaattacaattcttGATATGATTGTAGATTTAAAGCTCACCACCat
caactttttcaataatGGTCACATTCTGAATGGCTATGAAGTCTACTCTT
TCCTGCAAAGTCATGATGTTAGAATATCAAACCAAGTGATCGATAAGTCT
GATTTTACCCCTTTCTGTCGGCACCCATCAATATCAGATAATTTCAAATC
GTTCATGTCACACTTACACTGGAAAGACCGTGCTCGAAATATATCAATGC
TACGAACTCAGGCTAACATTTCTCAGTTGCACTTGGTGATTTACAAGCAC
AAGACAAAAGATAACTATATTGGGAAATTGCATATTCAAACATTCAATCG
ACGTGGACAAATGAAGTTCAACGGAGGAGATTATTGGAGAGCTACCATCA
CTGGACGATCAATCAGAACGAGTATTAATATCCAAGATAAATCGGATGGA
ACGTATACCGGATGGTTTCCCGTATTATTTCCGGGTATTTTTTCGGTACA
CGTTGTATTGGAGTTTAGTAATTATGAAGGAATAACGGATCCACCTCTTG
ATTGGTTCTCAAAAGGTTCAATTCAAGGAAGGTTTCAGCCAG
Run BLAST on NCBI

protein sequence of TCONS_00054388-protein

>TCONS_00054388-protein ID=TCONS_00054388-protein|Name=TCONS_00054388-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MTSSKNKALLCVSLCIVTYIIHNEITILDMIVDLKLTTINFFNNGHILNG
YEVYSFLQSHDVRISNQVIDKSDFTPFCRHPSISDNFKSFMSHLHWKDRA
RNISMLRTQANISQLHLVIYKHKTKDNYIGKLHIQTFNRRGQMKFNGGDY
WRATITGRSIRTSINIQDKSDGTYTGWFPVLFPGIFSVHVVLEFSNYEGI
TDPPLDWFSKGSIQGRFQP
Run BLAST on NCBI

transcript from alignment at scaffold_242:1128110..1129511-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054388 ID=TCONS_00054388|Name=TCONS_00054388|organism=Clytia hemisphaerica|type=transcript|length=1402bp|location=Sequence derived from alignment at scaffold_242:1128110..1129511- (Clytia hemisphaerica)
CTTGAGATCATATTGTCAAATGATTATTTGTATCCATTTCTTGGGGAGAG
TATATCTAACACTGTGAAATAATCTAAACCGTAAATGACCAGCTCGAAGA
ATAAAGCTCTTCTTTGTGTATCATTGTGTATAGTAACATATATCATTCAC
AATGAAATTACAATTCTTGATATGATTGTAGATTTAAAGCTCACCACCAT
CAACTTTTTCAATAATGGTCACATTCTGAATGGCTATGAAGTCTACTCTT
TCCTGCAAAGTCATGATGTTAGAATATCAAACCAAGTGATCGATAAGTCT
GATTTTACCCCTTTCTGTCGGCACCCATCAATATCAGATAATTTCAAATC
GTTCATGTCACACTTACACTGGAAAGACCGTGCTCGAAATATATCAATGC
TACGAACTCAGGCTAACATTTCTCAGTTGCACTTGGTGATTTACAAGCAC
AAGACAAAAGATAACTATATTGGGAAATTGCATATTCAAACATTCAATCG
ACGTGGACAAATGAAGTTCAACGGAGGAGATTATTGGAGAGCTACCATCA
CTGGACGATCAATCAGAACGAGTATTAATATCCAAGATAAATCGGATGGA
ACGTATACCGGATGGTTTCCCGTATTATTTCCGGGTATTTTTTCGGTACA
CGTTGTATTGGAGTTTAGTAATTATGAAGGAATAACGGATCCACCTCTTG
ATTGGTTCTCAAAAGGTTTGTTTCGTTTTTTGGACAATCAGTCATTTCGC
TCATCAGTTTTATACACTTTTTTTCTAAAGAACATCAAACATTTCAAAGC
CTTCTGAAGTTAAAGGTTAAAAATATTCTTTTTGTCCTTTTACCCATTAT
GTTTTTATATAGTTTGGTCTTGTGAAAAAACAAACAATGTGCAAACAATT
TAAGTAAAGACATATAAAGGAGACTTTTGTAACGGGCTCTATCAATTGAC
CCAATCATGTGCTTCGTTGACTAAAAGTAAGGTAAATTATAAAGTGGTTT
AAAAGATAACGTCCAAACGAGCTTACACAAGCCAATAAATCCCTTTTTCA
CAATTCTTTTTATTCCTCTATACCTACCGATTCTAAATTTTGATTTTAAA
GGTTTTATTTTACATAAGTGTTTTCGTTTCATATCAGACACATATTTCAT
ATCAGGGAGTGTCTGCCTATTGTTCTATTGCGCTGATATAAGCAAAAAAG
GTTTTTCTTTTTCTCTTTCTGAACAATCTTGCTTCACATCCATGCCAATC
CGATCTAAAAAAGCTTGTAAATTGAAATTGATGAGTAAGCAAACGATATC
ACTCTTATTCAAAAACAAAACCTTTAAAGCTTTCTTAGTTATAATGATTA
AATTTCTTTAATCGTTTATCATTAGGTTCAATTCAAGGAAGGTTTCAGCC
AG

Coding sequence (CDS) from alignment at scaffold_242:1128110..1129511-

>TCONS_00054388 ID=TCONS_00054388|Name=TCONS_00054388|organism=Clytia hemisphaerica|type=CDS|length=1314bp|location=Sequence derived from alignment at scaffold_242:1128110..1129511- (Clytia hemisphaerica)
GTTCAATTCAAGGAAGGTTTCAGCCAATGACCAGCTCGAAGAATAAAGCT
CTTCTTTGTGTATCATTGTGTATAGTAACATATATCATTCACAATGAAAT
TACAATTCTTGATATGATTGTAGATTTAAAGCTCACCACCATCAACTTTT
TCAATAATGGTCACATTCTGAATGGCTATGAAGTCTACTCTTTCCTGCAA
AGTCATGATGTTAGAATATCAAACCAAGTGATCGATAAGTCTGATTTTAC
CCCTTTCTGTCGGCACCCATCAATATCAGATAATTTCAAATCGTTCATGT
CACACTTACACTGGAAAGACCGTGCTCGAAATATATCAATGCTACGAACT
CAGGCTAACATTTCTCAGTTGCACTTGGTGATTTACAAGCACAAGACAAA
AGATAACTATATTGGGAAATTGCATATTCAAACATTCAATCGACGTGGAC
AAATGAAGTTCAACGGAGGAGATTATTGGAGAGCTACCATCACTGGACGA
TCAATCAGAACGAGTATTAATATCCAAGATAAATCGGATGGAACGTATAC
CGGATGGTTTCCCGTATTATTTCCGGGTATTTTTTCGGTACACGTTGTAT
TGGAGTTTAGTAATTATGAAGGAATAACGGATCCACCTCTTGATTGGTTC
TCAAAAGGTTCAATTCAAGGAAGGTTTCAGCCAATGACCAGCTCGAAGAA
TAAAGCTCTTCTTTGTGTATCATTGTGTATAGTAACATATATCATTCACA
ATGAAATTACAATTCTTGATATGATTGTAGATTTAAAGCTCACCACCATC
AACTTTTTCAATAATGGTCACATTCTGAATGGCTATGAAGTCTACTCTTT
CCTGCAAAGTCATGATGTTAGAATATCAAACCAAGTGATCGATAAGTCTG
ATTTTACCCCTTTCTGTCGGCACCCATCAATATCAGATAATTTCAAATCG
TTCATGTCACACTTACACTGGAAAGACCGTGCTCGAAATATATCAATGCT
ACGAACTCAGGCTAACATTTCTCAGTTGCACTTGGTGATTTACAAGCACA
AGACAAAAGATAACTATATTGGGAAATTGCATATTCAAACATTCAATCGA
CGTGGACAAATGAAGTTCAACGGAGGAGATTATTGGAGAGCTACCATCAC
TGGACGATCAATCAGAACGAGTATTAATATCCAAGATAAATCGGATGGAA
CGTATACCGGATGGTTTCCCGTATTATTTCCGGGTATTTTTTCGGTACAC
GTTGTATTGGAGTTTAGTAATTATGAAGGAATAACGGATCCACCTCTTGA
TTGGTTCTCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034286XLOC_034286Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054388-proteinTCONS_00054388-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054388-exon-scaffold_242-1575043694:1128797..1129511TCONS_00054388-exon-scaffold_242-1575043694:1128797..1129511Clytia hemisphaericaexon
TCONS_00054388-exon-scaffold_242-1575043694:1128110..1128136TCONS_00054388-exon-scaffold_242-1575043694:1128110..1128136Clytia hemisphaericaexon
TCONS_00054388-exon-scaffold_242-1510915933:1128797..1129511TCONS_00054388-exon-scaffold_242-1510915933:1128797..1129511Clytia hemisphaericaexon
TCONS_00054388-exon-scaffold_242-1510915933:1128110..1128136TCONS_00054388-exon-scaffold_242-1510915933:1128110..1128136Clytia hemisphaericaexon
TCONS_00054388-exon-scaffold_242-1491911889:1128797..1129511TCONS_00054388-exon-scaffold_242-1491911889:1128797..1129511Clytia hemisphaericaexon
TCONS_00054388-exon-scaffold_242-1491911889:1128110..1128136TCONS_00054388-exon-scaffold_242-1491911889:1128110..1128136Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1128110..1129511 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.194726	0	0	0.359052	0.212796	7.44515	8.17179	6.33826	5.21082	3.84389	5.5856	0.354148	0.55168	0	0	0.599617	0.614589	2.26423	1.77702	0.836632	1.03589	0.305276	0.208155	0.714651	1.6583	0.0912702	0.194812	0.147758	0.150542
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR014756Ig_E-set
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054388 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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