TCONS_00054356 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054356
Unique NameTCONS_00054356
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2468

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054356 ID=TCONS_00054356|Name=TCONS_00054356|organism=Clytia hemisphaerica|type=transcript|length=2468bp
CTTTAAGATATTGGTTGTTTCTATAAATTAAGAGCTATTGGGAAAAATTT
GACTGTAAGCTTCATTAATCAGATCAAAAGCTTTGAGCTGCATTTTATAT
TATATTCGAATTCTTGGTATCACTACCTCAAGCCCAACCGAGCCTAACGA
TAGaaatcaGCGTTCCTGATCGACAACTCCCACAAAATGGAGGGACAAAA
AGCAAAGGAGAAATTAAAGACAAAATGGAAAGATTTGTATTCAAGTTGCA
GTTTTGATGGTTTTCATTACATCTTTGACGAGCGTGGTTTTCTTCGAATC
TTTTGGTTATTGATGGTCCTGGGTGCAACAGCTCTCAGCATTGTGCTTTT
CTATGGTGTCATCGAAGAATATTATAACTTTAAATCTCACACAAGTATTG
AAGAAGTATTAAGCAATGATAAGGTTGAATTTCCAACTGTAACTATTTGT
AATATAAACGCTGTCTCTAagaggaaaattgaaaaagcagGGTACAATTC
AAGTGTAGAGGAAATTGTCTCATTTTACCAGGACTTACGAGAAGGTCATT
TCAACGCCAATAAAAGTAATAAGGTTTTGGAAGAGCTGAAAGCGAACGGG
TTAACAAAAATGGGTGATCTTTTGAAACACTTTGAATACACATTTGGTGA
GATTATGGAAGATTCCGTTTTAAAAGATATAGCACCAAGACCATGTATGT
TTAAGGACCGAGAATGCAATAAGGATGAATTTACAGAAGTCATTTCTGCC
CACTATGGTTTGTGTTATCAATTCAACTCCATCTACTTGGAAATGAATCG
TCTCTATGCAAACGAAGCTGGAGAAGGAGCCGGTTTGAGATTATATTTGA
ACATTGACGAAGAAGATCTGTTGGTCAGTAATGTTCCATTTACTGGATTA
CAAGTTTTCGTTCATCCCTTTGGAGAGCCGTTTGAATCTGCAATTGCCAG
AAGAGTCCCCATCAGTCCCGGATCAATGAATTATATACATATTGATTACA
GACAGTGGGAGTTATTAGAATCACCATATGCTTCAGCTTGCGCTTCCAAA
AACTACAATCTGGTCAAGAAAATTGTCCCATACTCACAATCGATGTGCTC
GGTCGACTGCACCATGTCAAAGATGATGGATAAATGTGGTTGTGTTTCTG
AAGAGTTCGCAAACCATTTAGAGGATAAAAACAAGACTTGCAAATACAAT
CAAATCCAATGTGTCGAACAAATGCTTGGAAATCTCCAACAAATGCTACA
TACATGCAGAGTCCAATGTCCCCGGCAATGTTTGGTCACCAAGTATGGAA
TCTCAACTGGTCAAACAGCTATGGGAAACTCAAAAGTTTACAAAATGCTG
AAACAAAAACACAATAAAACCATAGATGAAGGATACGCCTTCATAAATAA
AAATGTATTTGGAATTGATGTCACATTCTCTGATATCGTCTACTTGAAAG
AAACCATGTCACCTGCTCAAAACTGGATCTCTGTATTGAGTACTATTGGA
GGAAGTTTAGGACTTGCAATGGGATGTAGTGTTGTCACTTTCATCGAATT
TATTGTTTTTGGTATTCAAGCGCTTTATTGGTACTGCAAATACAAATTGA
GTGACGATTGTACGTCCCCACAAAAAGCTAATGCCATACAAACTTAAAAA
TGACACAAATCTTTGATCAAAATTCCTTTTTTAGTGAGTTAAGCACCCCT
TTTTCCCAAGCCTCGTGGGACCCCTaccaaaatttgccaaagtaTCGTCC
CCTGCGCGAAATTAATCTAATGTTTATCCTCGCTAGAATGaaataatctg
aaaaataaTATGCATTTGGCGACTTTTTTCACAAGAACTGATACTTTTGC
CTGGATCTTGGCTGtcatatatatttttcatgatttttagaatCGAATCT
AGTTCTTAAGAAACTCTTTTTGCTCTGGGCTGAGAAAGAAAATGGATgaa
ttctcaaatattatgcattatgcattatgcaatatgcattatgtttcatg
cattttggacctgccgttTTCTTATTCTTATTTTATACCAGTGGCTCAAT
TTAGTAATAAATTAAACGCAGTAGGATTCCTTAGACTTTTagtaaccttt
ttgtttcccTGCCGTCCATTTAAAAACTACAATTTATACTGTAATGTTGT
AAGTAATGCAATGTgtgttttcaatttaaaaattgtggtattttataaca
aaatttttctttttatgtatTTTAAACGTGTATTTTGTAGATTTATCAAT
AACATCATATAATTATTTATCAACTAAAGACCTACATGGTCTCATCCGTT
TTAGTAGCTAAAGAAATACAGTAACTATATATTTTTTACAGATCATGCAG
GGTCATTTTATTTTCCTTTCATTTCTATATGACACTGTGTGTATTCATTT
TGACCAGACTGttgcaattttaaaatttggaaagCTGATGGTCGTACTCG
TTGCTTTTTTGATCTTCC
Run BLAST on NCBI

transcript from alignment at scaffold_242:777757..792564-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054356 ID=TCONS_00054356|Name=TCONS_00054356|organism=Clytia hemisphaerica|type=transcript|length=14808bp|location=Sequence derived from alignment at scaffold_242:777757..792564- (Clytia hemisphaerica)
CTTTAAGATATTGGTTGTTTCTATAAATTAAGAGCTATTGGGAAAAATTT
GACTGTAAGCTTCATTAATCAGATCAAAAGCTTTGAGCTGCATTTTATAT
TATATTCGAATTCTTGGTATCACTACCTCAAGCCCAACCGAGCCTAACGA
TAGGTAAGATTATTTATAATTACGGCATATTTCTTTGATTTATCTTTATA
TGGATACTGATTTGTATAATTACTCTATTCCAAGAAGCAAGTAATTTCTT
TAATTATTCATTGTTAACATCCAATTGAAGAGTTTCTTAATTAGGCATCA
GTCACGCGTAGCTTCTGAATCATGTGTATCTAAGGCTCATAACGTATTAC
TTTCCCAAATCTAATTTGCACATAGTAGAACACCCCTGTGTTGCAGCACA
AACCCACTGGGACCCCCACCACACTGGAAAATTCGGCCAAAATCTCGTCC
AAGGGATGATGAAAAGAAAAATTATTATTTTTTGAGATCGGGTTCATAAT
AATTTTACGTATCTCAGAGAAGAATGTATTGTAAATGTACTTGTCATTCA
TCCTCACGGCGATCTTTCATTGGATTAATCGGATTCAAAATTCCTTGTTT
TAGCCAAATTTTATGAAATTGACTGAGAAAAAATGTTTTCCTTTTTTTTT
ATCCTTTAAAGGGCAAATAAAAGTACATTCTGTGAAAATTTCAAGTCTCT
AGCACTTTCCTATCCGGAATTATCTTGATTCCGATTTAGAGCGATCTCAC
TCGGGATGAGGACGGGATAGAGGGATCTCTCGAAAACGAAAATGCCCAAT
AACTAGTGAACTACTTTTACATTGCTATAAGGAGACTTCATATACCAAAT
TTAATATCCTTACGAGCACTACTTAAGGAGTTACAAATGAAATTAGCCAA
AATAATCCCGATATTACAAAAGTTCCAAAGAACAATCACTGTGCCTCCCC
CCAGCAGACCTTCAATTCACGCCAATCACGCAAATTTTTTCCCCAAATTC
ACAAAATGTTTTTTCACAATTCACGCAATTTTGTTCATGCAAAGTTTTCC
AATTCACGGATTCACGCAAGTGAATAAGCCCATTCAGATTCACGCATTCA
CGCAAACCACTGGGGGGGGCCCTTGTATGGACAAAATCTCTCAGAATAAA
AAGACTGATTCACTTATGCTAAAATAACAACTTCGCTGTCACAATTGGTT
AAAGAGTTGAATTGGGAAATCTTCATTTGAGGTTGCGTGAATGCAAATTC
GTTAGTAATTTACTCGTTGATCAGATTAGAGGATTGGCTTTAATTTTGGT
ATGATTGTGCAATAATTACGGCAATAATTTCATATTATCGTTTGGTATTA
TGAAGTGATCGTTATCTTGAATATGACTTGCAAGTCTGAAGGGCTATAGA
TAAGAAACTCCTGGATGCGAAATGAAGTCGCTAAACGCGTAACCCGCGTA
GTTTTCACACAAACGACAGATTTAAAATACACGTTTTTTTATAAGAACAT
CCAAAATTGTTGAAGCCTTCGCATGTTCTTAGCTTTTTTGAGTTTTAAGC
CTAAAAATGTTCTTAACATGTTCACATTTTGACCATTTTGTAGGTATTTT
TGACCATTTCGTTAAGAAATAAGGTGTTTTTGTCCACAAAGCCTTAAAAT
GTTCTGAATTTGTTCTTAACATTTTGGCCATTGAAGCCTTATGTTTTTAA
GGTTAAAGATTCATCCTTAGCCCCTTCGAGGCTTTAAACTCAATGTTCTT
GAATCTTGAATTTTCAAAATTCTTTAAATTTAGCATCCTTCCTTTAAGCT
TTTTATAGACACCTATATTGCTTTTGTAAAGTTATCCCGTCATCACATAA
TGATGGTATTTGTGTTTACAACGTTAGAATATAATTGTATTGATCTTTAG
GAAAATCCTCTTTTATGATGAACTAACTGACTCCAATATAATTAACTCAG
GAAAAAACATGGGCATAAGCTATATATGCACTGTCCCAAATAATTTTCAC
CGATCAATATGGCCATAATATACCTTTTTTCTTCCATATTACAGATTAAG
GTTATAATGTTAGGTTAGAATATGATCTTATAAACTTATGTGTCATTGAC
GCTCAAAATATTATTAACTTTGTAAATGTGGAATTGTAATTAAATCTTTC
GATCAACTATCAAAATTATTAATGCAGAAAAGAATGCGGAAAATATAGAT
AAACCTTGATTGCATCAGAATCGCAAAAGTGTTGTTCAGCCCAAAGGGTG
CAAAAGGCAAACGTACGCGCGAGGGATGTCAAATTTAACACCTGTGCCCA
ATGCCAAAATCAAAAAAATCAAAGTCATATTCAGAAAAAACAAAAAATTA
AAATCAAAGTAAGAAAAAATCAAGAACAAAGTCAGAAAAATCAAAAAAAA
TCAAAATCAGAATCAGAAAAATTGGAAAAATAGAAAAATTCAAATTTGAA
ATAATTAAAATCAAAAAAATCAAAATAATTCAAAGAAAAAAATATCAAAC
AATAAAAAAAATCATGTTCACTTTTTCGAATTGTTTTACCTAAAATACTA
GTAATTCCTCCGTGAAATACCGTATTACTGTACTGGTAGAGTAAAAAAGT
TCAATACCGGAAAACTGGAATTAAATCGGTAAATGTTAAAAGAATCTATT
AAGAGTATATCAAATGGTATAAATAATCTCTTCTTTTTTTATTTTGAAGC
TATGACTTAAGTGGTTAATTCTTTAGTGAATTAATCAAGTTACATAATAA
AATCTCAAATAAAAAACAAAAAAAACAGACAATGGAAAGAAAAGCTAATT
AACATAATATAATATAAAGAAATTCTTCGCAACTCTCATTTCTAGTTTTC
AACTTGATATATTTTTCAAAGATCGCAAAGAGTTTGTTTTTCTATCATGG
AGGTAAGTTTAAAATTTTTACTAATATATTCCCAACAATTTCAATTTTTC
CAAGATTCAAGAGATTGAATTCTGTAAATTATTCAATCTTAATATCAAAA
TTTTATTTAATTTTCCAAGAAAATATTTTACTGTGTAAATTCTAAGATAA
TCAAAGACATCAAAACTAATAGAAGAAATTATTGACTCTTGAGCGGAAAG
TGGGTGAAGCTGAACTACACCCTAAATCGAGATTACCCCTAGCTATTATA
AAGATCACATAAGGATTAACTCCATTGTTGAGTTATTTAAAACCTAAATT
AGAATCGTTAAATAAACAAAAAGTTTGAAAGTGATCTTCCTGCAAATAGA
TCGTGAGGAGCCAATACCATGGAAAAGGAAACTTGACCAAAAGTTTCAAA
ATATGTAGAAAATTCCAAAATTTAGACTTGGCTCCGAGCCTTATTTTTTC
AGAGAATTTCAGCCTCGACGTTTGTTATTTATTTCCTTATTTATTTAGTC
GCTAAGGTTCGGTTTGCTAAGTCTGTAACTTATATGTATACGTATAACAA
TAGACTACCGTACAGAAGAAAAATGTTTATTAAATGTTACGTCAATACTT
TGTCATCTTTTTGTTTAGGCTTTTCTAAATGTGTGCAAGTTCCTAACTTG
TTTTCTCATTCTCAGCCTGAGCAATTCATTAACAATGAAACAAAAAAAAA
CGTGTAATCTAATCATTTTTTTTTTTTCATTTTTCAATTGATTATAATTG
CAGTACTCTGTACCAGAGTGTATCTCACGATTATCGTAGCGTAGTTTTGA
AATTAGCCGTAGATATTGGGTTCCCGGGGGGGGGGGGCAGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCGTCGGTCGACAAG
GGTAGTACCCCCCCCGGGATTGGGTTTGTGTACAGACAATAATTGCAGAG
GCTGATCCGAATAATTTCTTGTGGGAATTTATAAATTATGAATTATTTAT
AATTATGCTTTTATTAAAACGTAATTTCTCTGGAAAATTCAAAAATTGGT
AATATAATCATGATATCACGCAATTTTTTGTCTTCAATCACGATCACGCA
AATCAGTAAAAAATGGACGGAAAAAGTCCGAATCACGTATCACGGCTCAA
AAATCTTTCAAATCACGATTATTCTGACCTCTCATCATGCAATCATGAAG
AAAAAATTCTAAATCACGTAAGCACGCTGCGAAAAAGTCTTTATCGCGTC
ATCACGAAAACTGCTCGGGGGCCTCCTAAAAAGGGAGTCATTTTAGGAGG
TGAGATAAATTTGAAACGATAGTTAACCTGGGTGTGGAGTAAGCAGTGTT
CGAGGTGTTCACATGTTGTTCCAAACTTTAACACCGTTTTTTACCGTTAA
ACCCTCGCGCATATTTATTTTTCCCCGTTTACTATCCCTCTAACGGGCAA
TAGCATCGTTTAGTTTAAGCGCAAATAACTTTAGAATAAAACTTTCTCTA
TATTAGAAATGTTTTCCAGAAATTGCACTCTTTTAAAAGGAATAATTAAG
ATTTTTTCAATTTTCATCGTCCGTGGGGAGGCTAAAAGTAGATTTTGTGA
TTTCCACAACTTTTGACGAAATTTTGAATTTTGAAATTTGGAGCGCTAAA
GATTTTTAGCTCATTTCTAGCTTTGTGTTGATTTTACTTTTAAACCTTTA
AAAAAAAGGCTACAGGATATGTCTAAGAGAGAAAAATACATAGTTATAAC
TTTATAATTGAATTTTTGAAGTTAATATTTTCCATTATTTATCACGCTGC
GTCCCGGATACTAAAATATAAGAAAATAGTTTAATATCAATTCAAGCTGT
TTTCATTTCTTACTATTTAATTTCCGTAAATTTTAAATGGAAGCAAAAAG
AAACGGTAAAATATACACTCGTCAAAATATAAGACGGATAGACAGAGGCT
TACAATAATTTTTTTGAATGATCCTTTCTTACCAAATTTGTGAACAGGAG
ACGGCCCGAAGAATCTGTATTGTCCGAATATATCAACGATGGAGGATGTA
TGTAACATTTTAAAGACAGTTTCTAAATATACGATAAATTTTTGATATTA
GCACCCTTGTATTTTCGTTGTGTACAGGGGTGGGGTTACTTGATCACTTG
ATGAGTATATACTCCCCTGTTGCAGTGATCTGGAGAGTTCTAGAGAGTGA
TCTAGAGAAAATAGGGTACACGTTTTTTTTATAAGAACGTCAAAAATTTT
CGAAGCCTTCGGATGTTCTTAATTTTTTGGATTTGAAGCCTAAAAATGTT
CTTAAAATGTTCTTATTTTCAGCATTTTTTGAGCATTTTGATGTAATTTC
TTAAGAAATTGCATGTTTTTAAGTCTCGAAAGCCTTAGTATGTTCTTAGA
ATGTTGTTAAATTTTTGGGCCTCGAAGCCTTATGTTCTTATATAGTTTGT
TCTTATAAAAAAAACGTGTGATGGAAATATATAATCTGGCTTGTTTTTTG
ATGGGTGAGGATTACTTTCTTTACTGCTCAAATCTGAGCTATAATAAATC
AAAAATAAAAAGCTTGTTATACCAACGGGTCAAATCTACGTACACCGTCA
TTTAGTAACAATCAAATATCTTGGCCAACAAATTATAAAATGCTATTTTA
AAATAATGGTTGGAATGCCTAGAAAAAAACAAGATGCTCAATTTTAATTG
AAAAAAGTGTAGCAATTAGAGATATTTTGCTCATTTCCTCGCTTAATTGT
GTCTAATCATGCCGGAAAAAGCAAGTATGTAAAAATGCATATTTTGATTA
TTTCAGCATACTGTACTCATTATAAAAAAACCCGGTCTGGCAATGTATTG
TTTTAGCTTAATTGTCAATCATTCCTTTGCTCTAAGTAATAGGCAAGTGG
TGATTTGCTCACTTTTTGATCACTTTTTTTGTGTTATTTTTGTAGCCCTA
CCTGGGACTTACGGAGGTGAATAAAGATAACCTGAGCAGCGGCACATACC
GTTAAATCTTATCAGAATTGTGAGTTGGATTACTTCTTAAAGGACATAAA
CTCTGATACTTAAAAGAAGCCTGGAGAATAACGACTTTGGTGATTGCAGG
ATGCAATGTATTATACGCATTTCTGTGTACTTAACTTTGAGGTCTGAAAG
CTTCCAGGGATATGTAATAGCGTAGCTGGATAACGCACATTTGAAAAAGC
CTTGTTCTATCTCTGTACGCTGACATTAAAATTTGGTATAAAATTTAACT
TTTTTAATTACAAACTCGTGAAATTTGAATTTCAATGATTCTGCTGCTGC
ATTTATCCTTCACGATTAAAATTAAAGAGGAATCATGAAAAGCTTCTCAA
ATTCATGCAACACGCTGATAAAATTAGATTTCATTTAAAGGAAGCTTTTG
GGGTATCTTCTGAAAATATTATCTTGATGAAAAGCAGGAACATCTTAGCA
AAAAATGTGCAGACGTATAATGCATGAATAATTTGACTGCTTCAATTTTC
TTAAAAAACAGAACACTCAAGGGGACAGAGATGGATTTCTATTATGAAGA
GTTTACTATAGAAAAGACGCTAAGAATCAATCCGCTAAGGAATTCTCGTC
CTTCATGGATCCAGCTACGCTATTACTTATCCCTGAAGTTTCTAAGGAAT
TACAGCGATGGGGTAAAGCATGTAAACTTGATGTCTGAAAGTTGAGACAC
AAAATATTTTTACTTAATGACAACGACATGTTTTGATCTAAGTTCTTTTC
CTCAGGACACCCTGCATAAAAGTAGGATTCTAGAGTTATGTTGGATTCGA
AGGACTATCCTCTTTTAATATCACAATTACTAGTTAATTATATCGATCAC
GCTGAAAAATAATTACGATAATGATAAGTATCAATTTTAAAGTGACGTGT
TGGCCATTAGAGAAAATCTTAATTGCACGCTGTAATGAGGTTTTATTGCT
ACTTTTAGAAAGGGTAAAAGCATCATTAAAATGCCTGTTTAAAAGAGTTG
ATGAGCACGGTGCGGTCATATTTCTTTGTGCTAACTGATTGTTGCAATTA
AGTTTTAGCGATAAATAAGCTTTGATATAATAGCACAGCGCGACGAATCT
AAAAATAGTAACAAATCTGTACAAATTTATTCGTTTGTACGAGTTGCAAT
CCCATCCTCCTTTGCGTTAATTGCTCTTACAACAATAAAAGGTTATAACT
TTTATGATTTTTCAATCATTTCGAAATGAACTGTGGAATTGGAACTCGTA
CAAATTTCAAACGCTATTAAAATTCAAATCTTTACTTGGCTATTGAAGTG
TTGCGTTGTGGTTGACCTAAGAATAAGGGTTAGGGTAAGGGTCATCGCCT
GATGGGGTACAAGTGTATGTAATTCACAAATCTAAGGGGGGGATTTAAGT
TTATGGTCGGGTCCTTATATATGTAGTCAGGGGGGATTCTGAGGAACGTT
AGATTATTCATTTATGAGTCGTAGATACATACGTTCTTATTTTTTTGAGT
ATTTTTGTCCATTTTCTTAAGAAATACGGTGTTTTAGAGTCCGCAAAGCC
TTAGAATGTTCTTAACCGTTCTTAACATTTTGGCCACCAAAGCCTTATGT
TCTTATATAGTTTTTTTCTTATAAAAACGTGTTTTGGAGGTATATGTATA
CAAGTCTGCAATTTAAACTTTGAAGAACCATCCCTCAATCAGAGGCGCCG
GTAACGATATTTCCTCAATCAAAGTTTTACGTTATATTTTCATTGATTAT
TCAATGAAGGTGATGTTATTCTTAATTCATTTATTTCAAGTTAGTTTATG
ATTTATAGATAGATAGGCAAGATTTACACAATTACATCAGTAAGGAAAAT
TTAAAAGAAATAAGTTTGATAAATGTTGCAAATGTCAAAAATGCGTTGAT
CTAGGCTTAACCTTTAACAAACTACATTTACTGTTGGAAATATTGCACAC
TTTAGCAAACAAAATTTACAAGTGGAAAATTATATGGAATTCTTTAGCTT
ATCCAAAAGTTTTACTATTCACAAAATCTTTACTTGAAATTGAAAAGAAT
TGAAGTCATGGCGTACGGTCAAGAACTTCTTTTGGACAGAACGATTTTTA
AAATGAAGGTATATGCTTTTCCTAGACGGAGACAGCCATAAAATAGAATG
CATCCCTTATCGGGGAAAACTTCGTCGGGGAAAAGTGACGAAATTTTGGA
CAAATGACGAATATTTTCCCCGACGAAAATTTTCCCCGGCCTTTGGTCTA
ATTTCTTAGGAAATCGGGTGTTTTAGAGTACACAAAGCCTTAAAATGTTC
TTAATTTTTATGTATTCTTATCTTCTTTAAAAAACGTGTATGAGATTAAA
AACGAGTGAATTCGCTGCAAGAATTAACCTTTTTGTGACTTGAAAGGTTT
ATCACACCCCCTTCTCACAGACTCCGTAGGATTTTTTCATTCAGTGGGAA
TAAAAATAACGGACTGAAACTTGATGAGGGTTTCAATTCTTTTGTTTTCG
ACAGAAAATCCAGTGGGGATCGGAAAAATAGCATAATATTTTGATTATTT
TCAGTGGGAACAAAAATTGGTCGGAGAATTTTCTACCGCGGGGACGATAT
TTTGGACAATTGGTGGATTGCCTTAGTCTTATCCTCCTTTTGGTCTTGCA
ACTTGTCAATTTTTTTTGAAATTTTCAATTTCTAAAGAAGGCTTTAAACT
AGTGTAGATGTTATGCGAAGTACTAGGTACAATGGATAATGGCATATCAT
GTCTCTTTAAACTTTATTATTTCCAAAGTATCTTTAACCAACATGCTTTT
GTATAGCACGTTATCTGCGTTCGAGCTTTAAACCACAAATTCTGTTAAAT
ATTTTTTTTGATGTTATATCCACTTTCGGTTACATAAGTATATAGAAAGC
GTAAAGTCTATCTAGTAGTGGTAAATATATTCGACCTCTTATCTTTAAAC
CCTAAAGCAAGACAAAAACTACCGCTATATCTTTACCAAATAAATGTGTT
CTATAACTACGATAGAGTGCCTTTAACTCGAATTTTCCATCGCACTTTTC
CAACAACACCGTCACTTTAGCTTTCTGATTTAGGTTCCTTTTCCAGTTTT
GATATATCAGTCAAAAAAAATTCTATCAAAATAACATTAATTTACTGAAA
AAGGTGGTGTTGCCTGAAAAAGAAATATAATTTTCATTGCCCTCCCAGCG
GATTTTATTAAAGCTACTTCCTATTCATAAAAATTGGTAATTGTTTGGAT
ACGAGGCAAGTGATGTTCGTGCAGGGGAGGGTACTAAGGTTACGATCTGA
CGGGTATGTGTCGCCCGACTTTCGACCCTTGAATCCTTAGTGGGACTAAA
AAGGAGAAAAAATAGGAAAATTCTGCGATTTTTTCGACCCTTATTGGGAC
TAATTTGACCAAATTTTGTTCTTTCAAAGAGCAAAAAGTATTTTTCTGTT
TTTCCGACCCTTAGTGGGACTGAAATTTAATTTTCTGGTTTTTCCAACCC
TTACAGGGACTTTAAGGTCCCAAAAAGGCACCCTTAAGGGCGGTACATAC
GCGTATCCTTCACTTGCCTAAGCCCCCCCGGGTGTTCGTGACGGAATTTT
AATAAAAGGTCTATTCATTTCTGATGTTCCTGATTCAGAAAATCAAATTA
TTTCGGGGATTTAATTCTCTTAGGGGTTAGAAAAGATTACGTTATACACT
TTCTAGACATTGGAAAGGAAAATCTAATGAGTTACTGTTCTTTTTTCTTA
GAAATCAGCGTTCCTGATCGACAACTCCCACAAAATGGAGGGACAAAAAG
CAAAGGAGAAATTAAAGACAAAATGGAAAGATTTGTATTCAAGTTGCAGT
TTTGATGGTTTTCATTACATCTTTGACGAGCGTGGTTTTCTTCGAATCTT
TTGGTTATTGATGGTCCTGGGTGCAACAGCTCTCAGCATTGTGCTTTTCT
ATGGTGTCATCGAAGAATATTATAACTTTAAATCTCACACAAGTATTGAA
GAAGTATTAAGCAATGATAAGGTTGAATTTCCAACTGTAACTATTTGTAA
TATAAACGCTGTCTCTAAGAGGAAAATTGAAAAAGCAGGGTACAATTCAA
GTGTAGAGGAAATTGTCTCATTTTACCAGGACTTACGAGAAGGTCATTTC
AACGCCAATAAAAGTAATAAGGTTTTGGAAGAGCTGAAAGCGAACGGGTT
AACAAAAATGGGTGATCTTTTGAAACACTTTGAATACACATTTGGTGAGA
TTATGGAAGATTCCGTTTTAAAAGATATAGCACCAAGACCATGTATGTTT
AAGGACCGAGAATGCAATAAGGATGAATTTACAGAAGTCATTTCTGCCCA
CTATGGTTTGTGTTATCAATTCAACTCCATCTACTTGGAAATGAATCGTC
TCTATGCAAACGAAGCTGGAGAAGGAGCCGGTTTGAGATTATATTTGAAC
ATTGACGAAGAAGATCTGTTGGTCAGTAATGTTCCATTTACTGGATTACA
AGTTTTCGTTCATCCCTTTGGAGAGCCGTTTGAATCTGCAATTGCCAGAA
GAGTCCCCATCAGTCCCGGATCAATGAATTATATACATATTGATTACAGA
CAGGTAACATATTCTTAATTTTCATCCTTGAGGTTTCCGTTCATGATCTT
ACGTAAATATGCTTTCAAATGAAGTCATAGTAAGCTCGTGTGCCTTTCTC
AATGAATATAATAACAGAGATATTCCTTTGCAATCATTATCATACACGTC
CCATTCTGCATGTAGAAAGAAAGAACCATTCTAACATTTATGGTCACATA
CTTCCTTGGTTAGAATTGTTCTAATAGGATATTGAATTGAGACAAGGGTG
TCATTTTCATATCATTCATTCACAACCAGTATATATAATCAATCATTTCC
TTTGGCTTTTTAGTGGGAGTTATTAGAATCACCATATGCTTCAGCTTGCG
CTTCCAAAAACTACAATCTGGTCAAGAAAATTGTCCCATACTCACAATCG
ATGTGCTCGGTCGACTGCACCATGTCAAAGATGATGGATAAATGTGGTTG
TGTTTCTGAAGAGTTCGCAAACCATTTAGGTAATTCTGATCCATCTGCTC
AACTTAGCTCAACTCTCTCAAAAACTCTTAGTCGAGATGTGTTGAAACCA
AAATAATAATAATTATTTTGCTTTCCAGGATTTTTAACACCCCTGAAAAG
TTTGGTCTACGGTGAAATCAATAGCCTGAAATTTTGTGGATGGGCTTTTA
CCGCAAATGAGTAAAATTTTGAAAATTTGGATTGAAATAGATTTCAAAAA
GTTCAACTCGTTTGGAAATGAAACTCATTTGATTAATTTCCATCCTCACT
GAGCCTCATTTCCCTTGTCTTGAGAAAAGGTTTAAAATCTTATACTAAAT
TTGCAATATTTTTCTCTTTTATTTACAGAGGATAAAAACAAGACTTGCAA
ATACAATCAAATCCAATGTGTCGAACAAATGCTTGGTAAGCACCTCCAAA
TGTCTTTGTAGTGTTTAAAAAAATAGGATATAAAAAATCTTTCTTTTTCC
CTGAGGCTCATTCCCGACTAAATAGAAAAATATTATCAAAGGCATTTAAT
ACATGTATAATACATGTAAAACGGGCTCTTCCAGAAAAAAACCATTCATG
GGGGGTGGAGGATATATTGTCCAGGGGTAAATATTTGTGTCCAGGGGGTC
AATTCGATGCTTGTCCAGGGGTGAAACACGTGTCCAGGGGGTGAAAAATC
GAAATGTCCAGGGGTAGATCAAAGACAAAATAATATATCCTCCACCCCCC
ATGAACGAATTTTTTCTGGAAGAGCCCAACTTACTTACTGTATGACCAAC
AATAGTTGAGAATTTTCGGAGATCTTTTTGCCATTAAAATTTTCTAACAT
AAAGCGTGTGAAGTAAAAGGAATATTTTAGTCTTAATCGCAGACCTTTAT
AGATATACTTCCTATAAGGAACTATTTTCGCTAGAGGATAGGCAGAAGTC
TAGAAACATTTTGATACAAAGATATTTATAATGAATTTTACTTATGCGTT
CTTCCTAATCAGGAAATCTCCAACAAATGCTACATACATGCAGAGTCCAA
TGTCCCCGGCAATGTTTGGTCACCAAGTATGGAATCTCAACTGGTCAAAC
AGCTATGGGAAACTCAAAAGTTTACAAAATGCTGAAACAAAAACACAATA
AAACCATAGATGAAGGATACGCCTTCATAAAGTAAGTTGATGTTATGATG
ACTCATCGCTTACCAAACACGATTCTAACCTTCTTACTTTCTGAATCAAA
AAGATATGAGCATCCACGTGCTTCAGTTTTTTTTACATCCTCATAAAACT
CGGCAAAATACTTCTTCTTAGTATTGTCTAATAAGAACTGATTAAATCAA
AAATCAATTTTTAATACAGTTGAAACTCCGTAACTCGAACACCCCGGCTC
GGAAACGCACGGAAGACACTAATTTGCTCGAGTAATAGAGTAACGTTTAT
AACGCAGTGTAAACTGTAAGTGACCATGAGACTTGTTCGAGTTAAGGAGA
CATTCGAGTTATAGAGGTTCGAGTTATTGATACTTCACTGTATTTGTTTT
TTTTCTCGTAGTAAAAATGTATTTGGAATTGATGTCACATTCTCTGATAT
CGTCTACTTGAAAGAAACCATGTCACCTGCTCAAAACTGGATCTCTGTAT
TGAGTGAGTATTAAACTATTTATATTTGTAACTTTAATATGGAAAATTGT
GCCTGCTTATAATGCAAAGTCTTTTTCTGATCTATTCATTCTTGTATTCG
TTTAATTTTTTCACATTTGAGTTAATGATTACATCAGGGTCAAAAATAAT
GTAGCACCGAAATCAAATCAAACGCTCCTTTTGACAGTCCGCAGCATATC
TTCTTAACCCTTTGAGTGCGTTTTTTTTTTGAAAAAGTTGAAATTTTTTT
AATTTTTCTTTTGAAACTTAAAACTCTAAACTGCCATAAAAGCTTGTAGC
TTATGATTTAGAAGATGGTTTTGGTACCATATTAGAAAGCTATTTGTACA
CTCTTTCTAAAAACATTCGGTTTATGCCCCTTTAAATCGAGTGGTCAAGA
GCTATGACCTAAAGTCTGAGACTCAGTATTTTGGCTTGTTTTGAACGCAT
ATGCGCGTCTCTAATATGGTCTAAGGGTTAATTAAGTTAATATTCATCTG
GTGGTTGTTGGTGGAGCAGGGAGTTAGGGAGTCTATACCCTATTCATTTC
ATACCGAGTTTATGTATGTGTGCTTTTCAGCGACGGAGACGGTAAGGTTC
TGATTTGACTAGATCATGACCAACTGAGGACGACGGTAAATCAGTACTTT
TACCGTCCTCGATTTTGCGGGTCAGAATTGTGGGTTTTCCCAAATCACTT
CAGTCACTTTACCGTCCTCAAAAGTGCAAATACATAAACTCGATTATGCT
AGACCTGGGAGGTCTTTAAGAGTCTTTTGTTGTTAACAATATCCACTAGC
TTATAATTGTTTGTATTTTTCTTTCTCAGGTACTATTGGAGGAAGTTTAG
GACTTGCAATGGGATGTAGTGTTGTCACTTTCATCGAATTTATTGTTTTT
GGTATTCAAGCGCTTTATTGGTACTGCAAATACAAATTGAGTGACGATTG
TACGTCCCCACAAAAAGCTAATGCCATACAAACTTAAAAATGACACAAAT
CTTTGATCAAAATTCCTTTTTTAGTGAGTTAAGCACCCCTTTTTCCCAAG
CCTCGTGGGACCCCTACCAAAATTTGCCAAAGTATCGTCCCCTGCGCGAA
ATTAATCTAATGTTTATCCTCGCTAGAATGAAATAATCTGAAAAATAATA
TGCATTTGGCGACTTTTTTCACAAGAACTGATACTTTTGCCTGGATCTTG
GCTGTCATATATATTTTTCATGATTTTTAGAATCGAATCTAGTTCTTAAG
AAACTCTTTTTGCTCTGGGCTGAGAAAGAAAATGGATGAATTCTCAAATA
TTATGCATTATGCATTATGCAATATGCATTATGTTTCATGCATTTTGGAC
CTGCCGTTTTCTTATTCTTATTTTATACCAGTGGCTCAATTTAGTAATAA
ATTAAACGCAGTAGGATTCCTTAGACTTTTAGTAACCTTTTTGTTTCCCT
GCCGTCCATTTAAAAACTACAATTTATACTGTAATGTTGTAAGTAATGCA
ATGTGTGTTTTCAATTTAAAAATTGTGGTATTTTATAACAAAATTTTTCT
TTTTATGTATTTTAAACGTGTATTTTGTAGATTTATCAATAACATCATAT
AATTATTTATCAACTAAAGACCTACATGGTCTCATCCGTTTTAGTAGCTA
AAGAAATACAGTAACTATATATTTTTTACAGATCATGCAGGGTCATTTTA
TTTTCCTTTCATTTCTATATGACACTGTGTGTATTCATTTTGACCAGACT
GTTGCAATTTTAAAATTTGGAAAGCTGATGGTCGTACTCGTTGCTTTTTT
GATCTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034273XLOC_034273Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054356-exon-scaffold_242-1575043694:792412..792564TCONS_00054356-exon-scaffold_242-1575043694:792412..792564Clytia hemisphaericaexon
TCONS_00054356-exon-scaffold_242-1575043694:781662..782513TCONS_00054356-exon-scaffold_242-1575043694:781662..782513Clytia hemisphaericaexon
TCONS_00054356-exon-scaffold_242-1575043694:781186..781351TCONS_00054356-exon-scaffold_242-1575043694:781186..781351Clytia hemisphaericaexon
TCONS_00054356-exon-scaffold_242-1575043694:780780..780836TCONS_00054356-exon-scaffold_242-1575043694:780780..780836Clytia hemisphaericaexon
TCONS_00054356-exon-scaffold_242-1575043694:780034..780202TCONS_00054356-exon-scaffold_242-1575043694:780034..780202Clytia hemisphaericaexon
TCONS_00054356-exon-scaffold_242-1575043694:779562..779653TCONS_00054356-exon-scaffold_242-1575043694:779562..779653Clytia hemisphaericaexon
TCONS_00054356-exon-scaffold_242-1575043694:777757..778735TCONS_00054356-exon-scaffold_242-1575043694:777757..778735Clytia hemisphaericaexon
TCONS_00054356-exon-scaffold_242-1510915933:792412..792564TCONS_00054356-exon-scaffold_242-1510915933:792412..792564Clytia hemisphaericaexon
TCONS_00054356-exon-scaffold_242-1510915933:781662..782513TCONS_00054356-exon-scaffold_242-1510915933:781662..782513Clytia hemisphaericaexon
TCONS_00054356-exon-scaffold_242-1510915933:781186..781351TCONS_00054356-exon-scaffold_242-1510915933:781186..781351Clytia hemisphaericaexon
TCONS_00054356-exon-scaffold_242-1510915933:780780..780836TCONS_00054356-exon-scaffold_242-1510915933:780780..780836Clytia hemisphaericaexon
TCONS_00054356-exon-scaffold_242-1510915933:780034..780202TCONS_00054356-exon-scaffold_242-1510915933:780034..780202Clytia hemisphaericaexon
TCONS_00054356-exon-scaffold_242-1510915933:779562..779653TCONS_00054356-exon-scaffold_242-1510915933:779562..779653Clytia hemisphaericaexon
TCONS_00054356-exon-scaffold_242-1510915933:777757..778735TCONS_00054356-exon-scaffold_242-1510915933:777757..778735Clytia hemisphaericaexon
TCONS_00054356-exon-scaffold_242-1491911889:792412..792564TCONS_00054356-exon-scaffold_242-1491911889:792412..792564Clytia hemisphaericaexon
TCONS_00054356-exon-scaffold_242-1491911889:781662..782513TCONS_00054356-exon-scaffold_242-1491911889:781662..782513Clytia hemisphaericaexon
TCONS_00054356-exon-scaffold_242-1491911889:781186..781351TCONS_00054356-exon-scaffold_242-1491911889:781186..781351Clytia hemisphaericaexon
TCONS_00054356-exon-scaffold_242-1491911889:780780..780836TCONS_00054356-exon-scaffold_242-1491911889:780780..780836Clytia hemisphaericaexon
TCONS_00054356-exon-scaffold_242-1491911889:780034..780202TCONS_00054356-exon-scaffold_242-1491911889:780034..780202Clytia hemisphaericaexon
TCONS_00054356-exon-scaffold_242-1491911889:779562..779653TCONS_00054356-exon-scaffold_242-1491911889:779562..779653Clytia hemisphaericaexon
TCONS_00054356-exon-scaffold_242-1491911889:777757..778735TCONS_00054356-exon-scaffold_242-1491911889:777757..778735Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:777757..792564 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.35638e-09	5.2112e-10	0	0	67.318	68.7994	9.40155	9.09288	0.000489109	2.98067e-05	0.295656	1.51098e-05	21.0101	17.0182	19.0708	2.22843	5.8172	5.62845	3.56405	6.49311	0.00803685	1.55239	5.32188	8.2887	1.35901	0.795739	0.969064	1.29098	0	0.366064
Blast
[Close]
BLAST of TCONS_00054356 vs. Swiss-Prot (Human)
Match: ASIC1 (Acid-sensing ion channel 1 OS=Homo sapiens GN=ASIC1 PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 7.162e-26
Identity = 119/472 (25.21%), Postives = 204/472 (43.22%), Query Frame = 1 
Query:  241 SSCSFDGFHYIFD-ERGFL-RIFWLLMVLGATALSIVLFYGVIEEYYNFKSHTSIEEVLSNDKVEFPTVTICNIN-----AVSKRKIEKAGYNSSVEEIVSFYQDLREGHFNANKSNKVLEEL--KAN--GLTKMGDLLKHFEYTFGEIMEDSVLKDIAPRPCMFKDRECNKDEFTEVISAHYGLCYQFNSIYLEMNRLYANEAGEGAGLRLYLNIDEEDLL-----VSNVPF-TGLQVFVHPFGEP-FESAIARRVPISPGSMNYIHIDYRQWELLESPYASACASKNYNLVKKIVPYSQSMCSVDCTMSKMMDKCGCVSEEFANHLEDKNKTCKYNQI-QCVEQMLGNLQQMLHTCRVQCPRQCLVTKYGISTGQTAMGNSKVYKMLKQKHNKTIDEGYAFINKNVFGIDVTFSDIVYLKETMSPAQNWISVLSTIGGSLGLAMGCSVVTFIEFIVFGIQALYWYCKYKL 1599
            SS +  G  +IF  ER  L R  W L  LG+ A+ + +    ++ Y+++   T ++EV ++ ++ FP VT+CN+N      VSK  +  AG      E+++   +  E         K LE L  KAN          ++ F    G  + D +L       C F+   C+ ++F +V+   YG CY FNS      RL   + G G GL + L+I +++ L          F  G++V +H   EP F   +     ++PG   ++    ++   L  P+ +  A    + +     YS + C +DC    +++ C C       H+      C   Q  +C +  L  L +      V C   C +T+YG       + +    K L +K NK+      +I +N+  +D+ F  + Y       A     +L  IGG +GL +G S++T +E   +  + +    K+KL
Sbjct:   23 SSSTLHGLAHIFSYERLSLKRALWALCFLGSLAVLLCVCTERVQYYFHYHHVTKLDEVAAS-QLTFPAVTLCNLNEFRFSQVSKNDLYHAG------ELLALLNNRYEIPDTQMADEKQLEILQDKANFRSFKPKPFNMREFYDRAGHDIRDMLLS------CHFRGEVCSAEDF-KVVFTRYGKCYTFNSGRDGRPRLKTMKGGTGNGLEIMLDIQQDEYLPVWGETDETSFEAGIKVQIHSQDEPPFIDQLG--FGVAPGFQTFVACQEQRLIYLPPPWGTCKAVTMDSDLDFFDSYSITACRIDCETRYLVENCNCR----MVHMPGDAPYCTPEQYKECADPALDFLVEKDQEYCV-CEMPCNLTRYGKELSMVKIPSKASAKYLAKKFNKS----EQYIGENILVLDIFFEVLNYETIEQKKAYEIAGLLGDIGGQMGLFIGASILTVLELFDYAYEVI----KHKL 465
The following BLAST results are available for this feature:
BLAST of TCONS_00054356 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASIC17.162e-2625.21Acid-sensing ion channel 1 OS=Homo sapiens GN=ASIC... [more]
back to top