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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054349 ID=TCONS_00054349|Name=TCONS_00054349|organism=Clytia hemisphaerica|type=transcript|length=2233bpRun BLAST on NCBI protein sequence of TCONS_00054349-protein >TCONS_00054349-protein ID=TCONS_00054349-protein|Name=TCONS_00054349-protein|organism=Clytia hemisphaerica|type=polypeptide|length=535bp VSNLIYYYTRKIKTKLASKMDPMFMAMSYFRRRKFDECIEICTKILLKNPRun BLAST on NCBI transcript from alignment at scaffold_242:683736..695388- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054349 ID=TCONS_00054349|Name=TCONS_00054349|organism=Clytia hemisphaerica|type=transcript|length=11653bp|location=Sequence derived from alignment at scaffold_242:683736..695388- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_242:683736..695388- >TCONS_00054349 ID=TCONS_00054349|Name=TCONS_00054349|organism=Clytia hemisphaerica|type=CDS|length=24120bp|location=Sequence derived from alignment at scaffold_242:683736..695388- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054349 vs. Swiss-Prot (Human)
Match: TTC8 (Tetratricopeptide repeat protein 8 OS=Homo sapiens GN=TTC8 PE=1 SV=2) HSP 1 Score: 665.996 bits (1717), Expect = 0.000e+0 Identity = 324/558 (58.06%), Postives = 418/558 (74.91%), Query Frame = 1
Query: 46 LASKMDPMFMAMSYFRRRKFDECIEICTKILLKNPYDQ----------GAWLLKTRAYTEQXXXXXXXXXXXGIAEMLMDDTSIAQVARPGTSLKKPAT--SSGQAQAMRPMSNAGRPLSGFVRPGTQGGRPGTMEQAIKAPRTASTARPVTSASGRFVRLGTASMLSQPDGPFINLSKINFSKYAQRPNLSKALFEYIFLHENDVR--------------------------NXXXXXXXXXXXXDFKDWWWKVQLAKCYYRLGLYRDAEKQLKSALRDEDIVDTYLYLCKVYVKLDQPLTAIEVYTKGLEKFPKETTLLTGIARIYEMLNDMTNAVKYYKQVLESDNTHVEAISCIATNHFYSDQPEVALKFFRRLLQMGVYNAEIYNNLGLCCFYAQQYDMALNCFTRALSLASDDNMAALNCFTRALSLASDDNMADIWYNISHVAIDIGDTKLAYQCLRLTLAADNDHAEAYNNLGVLELRKTSLDGARSYFQQSMKLAPGMYEPHYNLAHISDKIGDIQTSYNSIKKSLENFPDHAEGKTLLKDLQAKLAAI 1605
++S+M+P+ +A SYFRRRKF C ++CT++L K+PYDQ AW+LK RA TE VY+DE++VD+EGIAEM++D+ +IAQV RPGTSLK P T + G +QA+RP++ AGRP++GF+RP TQ GRPGTMEQAI+ PRTA TARP+TS+SGRFVRLGTASML+ PDGPFINLS++N +KY+Q+P L+KALFEYIF HENDV+ NAL LAA +T + +KDWWWKVQ+ KCYYRLG+YR+AEKQ KSAL+ +++VDT+LYL KVYV LDQP+TA+ ++ +GL+KFP E TLL GIARIYE +N+M++A +YYK+VL+ DNTHVEAI+CI +NHFYSDQPE+AL+F+RRLLQMG+YN +++NNLGLCCFYAQQYDM L F RALSLA ++ A AD+WYN+ HVA+ IGDT LA+QC RL L +N+HAEAYNNL VLE+RK ++ AR+ Q + LAP MYEPH+N A ISDKIGD+Q SY + +KS FPDH + + L+K L+ A +
Sbjct: 1 MSSEMEPLLLAWSYFRRRKFQLCADLCTQMLEKSPYDQEPDPELPVHQAAWILKARALTEMVYIDEIDVDQEGIAEMMLDENAIAQVPRPGTSLKLPGTNQTGGPSQAVRPITQAGRPITGFLRPSTQSGRPGTMEQAIRTPRTAYTARPITSSSGRFVRLGTASMLTSPDGPFINLSRLNLTKYSQKPKLAKALFEYIFHHENDVKTIHLEDVVLHLGIYPFLLRNKNHIEKNALDLAALSTEHSQYKDWWWKVQIGKCYYRLGMYREAEKQFKSALKQQEMVDTFLYLAKVYVSLDQPVTALNLFKQGLDKFPGEVTLLCGIARIYEEMNNMSSAAEYYKEVLKQDNTHVEAIACIGSNHFYSDQPEIALRFYRRLLQMGIYNGQLFNNLGLCCFYAQQYDMTLTSFERALSLAENEEEA-----------------ADVWYNLGHVAVGIGDTNLAHQCFRLALVNNNNHAEAYNNLAVLEMRKGHVEQARALLQTASSLAPHMYEPHFNFATISDKIGDLQRSYVAAQKSEAAFPDHVDTQHLIKQLRQHFAML 541 The following BLAST results are available for this feature:
BLAST of TCONS_00054349 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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