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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054346 ID=TCONS_00054346|Name=TCONS_00054346|organism=Clytia hemisphaerica|type=transcript|length=1295bp
TATGCGTTCGCTGAGAGATGTAACCTATCCAAATGGTGGGAAGAGGGCGG
TAAGGGTGGTGATGATATGAATCGACTATGTTCCAAAAAGGGCGGTAATT
TATGATATTTACGACATCCCATTGTATTGTATTTGGATGGGAAGTAGCGA
TCGTCATCGAATAATTGTGATGCTCGATAGTTGCCATAGTAATTGCTGGG
AGATGGTAGACAAGTTGTAATAGGTGATAATTTGTCGTGGTAGAATGTTG
GAGGCGAGAGGGACGAGGAATAGCGTCTTTTGTGATCGATTTGGTAGTCT
GTTTGTAAAGGTTgtgatttctctttttttagaaTGTGTTTGATGCTGAA
AGAGTCTGCTGATGTCGAACTATGAAAGGATGGCGTGGCAGAGGGCGGGG
TCGATGATAACGGGGGCGTGTTTGATAAATGTCGTCTCATATTTGATGTC
GGGGAGGTTGAATTCGAGCGTTTTGGTAACATGTAGACATCCTCATTTGT
TTCGAAAGTATCATATTCTTGTTTAATATAGCTTCCGTGAACGTGCGACG
GTGCCCCGTGCCATTGTGCTCGCGGCCCGCAATCACGCATTGGATCATAC
ACAAGAGGAATGTCACATACTGGACGATGTTCGGAGCGATGATGTCCACG
TATATCAAAAGATGTCGATTTCCGTAAAAATTTCTCGTCCATTAAATATC
GTCGCGTTTTTGGTGGTTGTGCAATCTTTTCGTGATGCCGGTACTTGAGG
TCACTGTTTTCGTGTGGTAGAAACATGGCATCAGGATCCATAACTCTTTC
CATTGCTCTGATAATGTCTGAATATAATAATGCTATGAAAACTTCTCAAT
TTATAGTCTGTCGATGGGATACCACACAAAGACAATATGTCAAAAAACAA
ACTCAGTTATACACTGTGTCCATATATAAAAACGGGGTTAACTGTATATT
TGAAGCTTGATGAAATTATCTCAATTCCTTTTTCGAAGTAAATTTCGTTA
GTGAACAAGATGGTTTACAGCCGTTGGATGATGTCGGtcagaaaactcaa
tttctcAATTTCACTTAAAAGAGAGAAATTGTATCTACTTATCTTTTTGT
TAACAAATCGACTTCAGCGAAGGATGGATAGTCGTCAAATACCCAGTTGG
CGTGGTGTGTAGAGTAGATTTAAGGGTCCAACAGGTGTTTACGCTGAAGA
AAAGGCGCTTAACTAACTGCTGTGCTTGTCTTCCTCTATTCAACAAATAA
AGTACTAAACAAAAGATTGAAATTGataacaaaaaaattctaaaa Run BLAST on NCBI transcript from alignment at scaffold_242:588258..590153- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054346 ID=TCONS_00054346|Name=TCONS_00054346|organism=Clytia hemisphaerica|type=transcript|length=1896bp|location=Sequence derived from alignment at scaffold_242:588258..590153- (Clytia hemisphaerica)
TATGCGTTCGCTGAGAGATGTAACCTATCCAAATGGTGGGAAGAGGGCGG
TAAGGGTGGTGATGATATGAATCGACTATGTTCCAAAAAGGGCGGTAATT
TATGATATTTACGACATCCCATTGTATTGTATTTGGATGGGAAGTAGCGA
TCGTCATCGAATAATTGTGATGCTCGATAGTTGCCATAGTAATTGCTGGG
AGATGGTAGACAAGTTGTAATAGGTGATAATTTGTCGTGGTAGAATGTTG
GAGGCGAGAGGGACGAGGAATAGCGTCTTTTGTGATCGATTTGGTAGTCT
GTTTGTAAAGGTTGTGATTTCTCTTTTTTTAGAATGTGTTTGATGCTGAA
AGAGTCTGCTGATGTCGAACTATGAAGTGAATAATAAAGAATCATAAATA
AATGTTGTTCGGGAAAGAAATGATCAATTGAGACGACAAAACAAGCAAAA
CATCCCTTCTCACAGACATAGTAGGCTTTTTTCTGCCAGTGAGGGTTAAA
AGTAACGGACTGAAAAACGATGGGGCTTGATATTACCATATTCGTTTTGG
CTGGGGTTTCAAATTCTTTTGTTTTCAAATCAGAAAATTCAATGGGGATG
GGGAGAAATAGTATAACATTTTGCAGTGAGGATTGGTTTACTTGATTAAT
CTCAGTGGGGACAAAAATTGCTATGGGGGATAGTTTTCCACTTGGGACGA
TATTTTGGCCAATTTTTCCAGAGGGTCTGTGGGAATGGGGTGTAGCAAAC
GTTAAGGTTCAAAATGTTAATTATGACCCTGGGTGAGGTGCTAGAGTTAT
AGTGGAGAAATATAGGGAAAAAAAGTAGCGACTTCCCCCACCTTCGTGGA
GCAATCGAAAGAGGAGTTTTTGGGTCACCTCCGACTGCGGTCACAGACTT
ACTTACAAGAGGAATAGATTATTTTCAGTTCCCCAGAGATATATTTAAAC
TGATGAATAATGACGTTTACCTTTGAGAGGATGGCGTGGCAGAGGGCGGG
GTCGATGATAACGGGGGCGTGTTTGATAAATGTCGTCTCATATTTGATGT
CGGGGAGGTTGAATTCGAGCGTTTTGGTAACATGTAGACATCCTCATTTG
TTTCGAAAGTATCATATTCTTGTTTAATATAGCTTCCGTGAACGTGCGAC
GGTGCCCCGTGCCATTGTGCTCGCGGCCCGCAATCACGCATTGGATCATA
CACAAGAGGAATGTCACATACTGGACGATGTTCGGAGCGATGATGTCCAC
GTATATCAAAAGATGTCGATTTCCGTAAAAATTTCTCGTCCATTAAATAT
CGTCGCGTTTTTGGTGGTTGTGCAATCTTTTCGTGATGCCGGTACTTGAG
GTCACTGTTTTCGTGTGGTAGAAACATGGCATCAGGATCCATAACTCTTT
CCATTGCTCTGATAATGTCTGAATATAATAATGCTATGAAAACTTCTCAA
TTTATAGTCTGTCGATGGGATACCACACAAAGACAATATGTCAAAAAACA
AACTCAGTTATACACTGTGTCCATATATAAAAACGGGGTTAACTGTATAT
TTGAAGCTTGATGAAATTATCTCAATTCCTTTTTCGAAGTAAATTTCGTT
AGTGAACAAGATGGTTTACAGCCGTTGGATGATGTCGGTCAGAAAACTCA
ATTTCTCAATTTCACTTAAAAGAGAGAAATTGTATCTACTTATCTTTTTG
TTAACAAATCGACTTCAGCGAAGGATGGATAGTCGTCAAATACCCAGTTG
GCGTGGTGTGTAGAGTAGATTTAAGGGTCCAACAGGTGTTTACGCTGAAG
AAAAGGCGCTTAACTAACTGCTGTGCTTGTCTTCCTCTATTCAACAAATA
AAGTACTAAACAAAAGATTGAAATTGATAACAAAAAAATTCTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054346-exon-scaffold_242-1575043694:589778..590153 | TCONS_00054346-exon-scaffold_242-1575043694:589778..590153 | Clytia hemisphaerica | exon |
| TCONS_00054346-exon-scaffold_242-1575043694:588258..589176 | TCONS_00054346-exon-scaffold_242-1575043694:588258..589176 | Clytia hemisphaerica | exon |
| TCONS_00054346-exon-scaffold_242-1510915933:589778..590153 | TCONS_00054346-exon-scaffold_242-1510915933:589778..590153 | Clytia hemisphaerica | exon |
| TCONS_00054346-exon-scaffold_242-1510915933:588258..589176 | TCONS_00054346-exon-scaffold_242-1510915933:588258..589176 | Clytia hemisphaerica | exon |
| TCONS_00054346-exon-scaffold_242-1491911889:589778..590153 | TCONS_00054346-exon-scaffold_242-1491911889:589778..590153 | Clytia hemisphaerica | exon |
| TCONS_00054346-exon-scaffold_242-1491911889:588258..589176 | TCONS_00054346-exon-scaffold_242-1491911889:588258..589176 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:588258..590153 - |
Blast
The following BLAST results are available for this feature:
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