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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054340 ID=TCONS_00054340|Name=TCONS_00054340|organism=Clytia hemisphaerica|type=transcript|length=653bp
TTTCATTTGAAATCATCACTTCAACTtttgaatcaagttcaagaagatct
caaaacaacaaaaatgaagaCCATCATCTTGATCGCCATCTTCGCTGcTT
GCTCAGCTGAATTCTACCACCCATGTCCTGACAGACTGTGTCATGGTGCA
TCCTTGGGATCCATCTTTGGATTAGGAGATAAACACCGAACACCCGATAT
CTTTGTCCAATGTGCACCAGGAGCTCATGGAAAACTGAGAGCTGTTTGCC
AAAAATGTCCACGACACCAAGTATTCAGCCGTAAATTCTCAGTTTGTGTT
CGACGTACTTTTGCTGTTTGCAAAGGAAAACATTGCAAACCACATGCTTT
CAAACCACATCCAAAAGAATgCCCAAAATCATTGTGCGCCGATTACCCAC
ACAGCGACTACGTTGTCTTCCGATACCCACACAAACCAACTTATTACGTC
CAATGTACCGCTGGAAGACCTGTCTGCAGACAATGTCCACATGGATTGAT
CTTCAACAACGACATCAAAGTTTGCGATTTCCCACCAGCCAAGAAACATT
aaactcaaaactcaaaaatttttaCCATTTGTTTTTTAACTCTTTGTACA
TTAGGTTCTTTGTTTgatatgcaaaaaaaaaattaatacatGCTCAATGA
AAT Run BLAST on NCBI transcript from alignment at scaffold_242:458400..460251- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054340 ID=TCONS_00054340|Name=TCONS_00054340|organism=Clytia hemisphaerica|type=transcript|length=1852bp|location=Sequence derived from alignment at scaffold_242:458400..460251- (Clytia hemisphaerica)
TTTCATTTGAAATCATCACTTCAACTTTTGAATCAAGTTCAAGAAGATCT
CAAAACAACAAAAATGAAGACCATCATCTTGATCGCCATCTTCGCTGGTA
AGTTTGATGAAAAGGGCTATTCCAGAAAATGTCCGTACATGGGGTTGGAG
GATATAGTGTCTGGGGGGAGTGAAAAATCTGAAAAATTTGTCCTGTCCGG
GAGGTAAACTTGCTCTGTTTGGGGTAATTTTGCTCGGTTTGAGGGTTATT
TTGAATGTCCATGGGGTCAACTGATGCTTGTTTAAGCTTTGTTGAAATTT
AAAAACTTGGCTACGAAACGGTAAACATTGATGGCAGGATACCTAAAAAA
TAAACAATGTACTTTCTTGTTTTTTTAGCTTGCTCAGCTGAATTCTACCA
CCCATGTAAGTATTNACTTTGCTGAAATTTAACAACTTGGCTACGAAACG
GTAAACATTGATGGCAGGATACCTAAAAAATAAACAATGTACTTTCTTGT
TTTTTTAGCTTGCTCAGCTGAATTCTACCACCCATGTAAGTATTAATCTC
ATTATCAAAACTAATTACTAATTACCTCGATTAAGCAATATACACAATTC
AGTGTCCATATTCTTCCGAAATTCGAAATACAGTTGACAGTCTCTAATTC
GATTTCGAAGGGAAATTCGATTCTTATCGAATAAGGGGGCGTATCGAATA
GTAGAGCATCGTTTATGAGAGTTTCTTGTCGGCAGTGACTTCAAATATTA
TCGAATAATGGAGCGTATCGAAAAGTAGAACGTCGAATTGGAGAGCGTCA
ACTGTAGTTCCCTAAGCTTAAAAAAGGCTCTAAAGCATTCAAAGATTTTT
GTTTCTTGAAAATAGGACGATGATCGTGAAAATACAATGATTATAAAACA
ACCATACCTCTTTCGCATGTCTCAAACCTTCAACAAAAATTTTCCAAATC
CTTCTAGGTCCTGACAGACTGTGTCATGGTGCATCCTTGGGATCCATCTT
TGGATTAGGAGATAAACACCGAACACCCGATATCTTTGTCCAATGTGCAC
CAGGAGCTCATGGAAAACTGAGAGCTGTTTGCCAAAAATGTCCACGACAC
CAAGTATTCAGCCGTAAATTCTCAGTTTGTGTTCGACGTACTTTTGCTGT
TTGCAAAGGAAAACATTGCAAACCACATGCTTTCAAACCACATCCAAAAG
AATGTAAGTTTCCAACCAATTTCAATCTGTTTATTTAGGTTTTGTTTTTT
AAGCATGAATCATCCTATAAAATGCGCTCTTTTAGGAAAAATCGGTTCAT
GGGGGTAGAGGATGAATTGTCGAGGGGTCCGAAAAATTGCATTGTCCAGG
GGGTAAATCTGCGCGATGTCCAGGGGTAAATTTTGGTGTCCAGGGGGTTA
AAGTGATGATTGTCCATAGGTATAATCCATGACCATGGGGTGAAAAATGA
AAATGTCCAGGGGCAATTAATTGAAAAAATAATATAAAAGGTCTATACTC
GCCAATATTAACTTTGTCTTTAGTTTTCATTTTAATCATCTCTCATTTCA
ATAATTCTTTTAATTTCAGGCCCAAAATCATTGTGCGCCGATTACCCACA
CAGCGACTACGTTGTCTTCCGATACCCACACAAACCAACTTATTACGTCC
AATGTACCGCTGGAAGACCTGTCTGCAGACAATGTCCACATGGATTGATC
TTCAACAACGACATCAAAGTTTGCGATTTCCCACCAGCCAAGAAACATTA
AACTCAAAACTCAAAAATTTTTACCATTTGTTTTTTAACTCTTTGTACAT
TAGGTTCTTTGTTTGATATGCAAAAAAAAAATTAATACATGCTCAATGAA
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054340-exon-scaffold_242-1575043694:460155..460251 | TCONS_00054340-exon-scaffold_242-1575043694:460155..460251 | Clytia hemisphaerica | exon |
| TCONS_00054340-exon-scaffold_242-1575043694:459847..459873 | TCONS_00054340-exon-scaffold_242-1575043694:459847..459873 | Clytia hemisphaerica | exon |
| TCONS_00054340-exon-scaffold_242-1575043694:459049..459294 | TCONS_00054340-exon-scaffold_242-1575043694:459049..459294 | Clytia hemisphaerica | exon |
| TCONS_00054340-exon-scaffold_242-1575043694:458400..458682 | TCONS_00054340-exon-scaffold_242-1575043694:458400..458682 | Clytia hemisphaerica | exon |
| TCONS_00054340-exon-scaffold_242-1510915933:460155..460251 | TCONS_00054340-exon-scaffold_242-1510915933:460155..460251 | Clytia hemisphaerica | exon |
| TCONS_00054340-exon-scaffold_242-1510915933:459847..459873 | TCONS_00054340-exon-scaffold_242-1510915933:459847..459873 | Clytia hemisphaerica | exon |
| TCONS_00054340-exon-scaffold_242-1510915933:459049..459294 | TCONS_00054340-exon-scaffold_242-1510915933:459049..459294 | Clytia hemisphaerica | exon |
| TCONS_00054340-exon-scaffold_242-1510915933:458400..458682 | TCONS_00054340-exon-scaffold_242-1510915933:458400..458682 | Clytia hemisphaerica | exon |
| TCONS_00054340-exon-scaffold_242-1491911889:460155..460251 | TCONS_00054340-exon-scaffold_242-1491911889:460155..460251 | Clytia hemisphaerica | exon |
| TCONS_00054340-exon-scaffold_242-1491911889:459847..459873 | TCONS_00054340-exon-scaffold_242-1491911889:459847..459873 | Clytia hemisphaerica | exon |
| TCONS_00054340-exon-scaffold_242-1491911889:459049..459294 | TCONS_00054340-exon-scaffold_242-1491911889:459049..459294 | Clytia hemisphaerica | exon |
| TCONS_00054340-exon-scaffold_242-1491911889:458400..458682 | TCONS_00054340-exon-scaffold_242-1491911889:458400..458682 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:458400..460251 - |
Blast
The following BLAST results are available for this feature:
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