TCONS_00054339 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054339
Unique NameTCONS_00054339
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length653

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054339 ID=TCONS_00054339|Name=TCONS_00054339|organism=Clytia hemisphaerica|type=transcript|length=653bp
TTTCATTTGAAATCATCACTTCAACTtttgaatcaagttcaagaagatct
caaaacaacaaaaatgaagaCCATCATCTTGATCGCCATCTTCGCTGcTT
GCTCAGCTGAATTCTACCACCCATGTCCTGACAGACTGTGTCATGGTGCA
TCCTTGGGATCCATCTTTGGATTAGGAGATAAACACCGAACACCCGATAT
CTTTGTCCAATGTGCACCAGGAGCTCATGGAAAACTGAGAGCTGTTTGCC
AAAAATGTCCACGACACCAAGTATTCAGCCGTAAATTCTCAGTTTGTGTT
CGACGTACTTTTGCTGTTTGCAAAGGAAAACATTGCAAACCACATGCTTT
CAAACCACATCCAAAAGAATgCCCAAAATCATTGTGCGCCGATTACCCAC
ACAGCGACTACGTTGTCTTCCGATACCCACACAAACCAACTTATTACGTC
CAATGTACCGCTGGAAGACCTGTCTGCAGACAATGTCCACATGGATTGAT
CTTCAACAACGACATCAAAGTTTGCGATTTCCCACCAGCCAAGAAACATT
aaactcaaaactcaaaaatttttaCCATTTGTTTTTTAACTCTTTGTACA
TTAGGTTCTTTGTTTgatatgcaaaaaaaaaattaatacatGCTCAATGA
AAT
Run BLAST on NCBI

protein sequence of TCONS_00054339-protein

>TCONS_00054339-protein ID=TCONS_00054339-protein|Name=TCONS_00054339-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
FHLKSSLQLLNQVQEDLKTTKMKTIILIAIFAACSAEFYHPCPDRLCHGA
SLGSIFGLGDKHRTPDIFVQCAPGAHGKLRAVCQKCPRHQVFSRKFSVCV
RRTFAVCKGKHCKPHAFKPHPKECPKSLCADYPHSDYVVFRYPHKPTYYV
QCTAGRPVCRQCPHGLIFNNDIKVCDFPPAKKH
Run BLAST on NCBI

transcript from alignment at scaffold_242:458400..460251-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054339 ID=TCONS_00054339|Name=TCONS_00054339|organism=Clytia hemisphaerica|type=transcript|length=1852bp|location=Sequence derived from alignment at scaffold_242:458400..460251- (Clytia hemisphaerica)
TTTCATTTGAAATCATCACTTCAACTTTTGAATCAAGTTCAAGAAGATCT
CAAAACAACAAAAATGAAGACCATCATCTTGATCGCCATCTTCGCTGGTA
AGTTTGATGAAAAGGGCTATTCCAGAAAATGTCCGTACATGGGGTTGGAG
GATATAGTGTCTGGGGGGAGTGAAAAATCTGAAAAATTTGTCCTGTCCGG
GAGGTAAACTTGCTCTGTTTGGGGTAATTTTGCTCGGTTTGAGGGTTATT
TTGAATGTCCATGGGGTCAACTGATGCTTGTTTAAGCTTTGTTGAAATTT
AAAAACTTGGCTACGAAACGGTAAACATTGATGGCAGGATACCTAAAAAA
TAAACAATGTACTTTCTTGTTTTTTTAGCTTGCTCAGCTGAATTCTACCA
CCCATGTAAGTATTNACTTTGCTGAAATTTAACAACTTGGCTACGAAACG
GTAAACATTGATGGCAGGATACCTAAAAAATAAACAATGTACTTTCTTGT
TTTTTTAGCTTGCTCAGCTGAATTCTACCACCCATGTAAGTATTAATCTC
ATTATCAAAACTAATTACTAATTACCTCGATTAAGCAATATACACAATTC
AGTGTCCATATTCTTCCGAAATTCGAAATACAGTTGACAGTCTCTAATTC
GATTTCGAAGGGAAATTCGATTCTTATCGAATAAGGGGGCGTATCGAATA
GTAGAGCATCGTTTATGAGAGTTTCTTGTCGGCAGTGACTTCAAATATTA
TCGAATAATGGAGCGTATCGAAAAGTAGAACGTCGAATTGGAGAGCGTCA
ACTGTAGTTCCCTAAGCTTAAAAAAGGCTCTAAAGCATTCAAAGATTTTT
GTTTCTTGAAAATAGGACGATGATCGTGAAAATACAATGATTATAAAACA
ACCATACCTCTTTCGCATGTCTCAAACCTTCAACAAAAATTTTCCAAATC
CTTCTAGGTCCTGACAGACTGTGTCATGGTGCATCCTTGGGATCCATCTT
TGGATTAGGAGATAAACACCGAACACCCGATATCTTTGTCCAATGTGCAC
CAGGAGCTCATGGAAAACTGAGAGCTGTTTGCCAAAAATGTCCACGACAC
CAAGTATTCAGCCGTAAATTCTCAGTTTGTGTTCGACGTACTTTTGCTGT
TTGCAAAGGAAAACATTGCAAACCACATGCTTTCAAACCACATCCAAAAG
AATGTAAGTTTCCAACCAATTTCAATCTGTTTATTTAGGTTTTGTTTTTT
AAGCATGAATCATCCTATAAAATGCGCTCTTTTAGGAAAAATCGGTTCAT
GGGGGTAGAGGATGAATTGTCGAGGGGTCCGAAAAATTGCATTGTCCAGG
GGGTAAATCTGCGCGATGTCCAGGGGTAAATTTTGGTGTCCAGGGGGTTA
AAGTGATGATTGTCCATAGGTATAATCCATGACCATGGGGTGAAAAATGA
AAATGTCCAGGGGCAATTAATTGAAAAAATAATATAAAAGGTCTATACTC
GCCAATATTAACTTTGTCTTTAGTTTTCATTTTAATCATCTCTCATTTCA
ATAATTCTTTTAATTTCAGGCCCAAAATCATTGTGCGCCGATTACCCACA
CAGCGACTACGTTGTCTTCCGATACCCACACAAACCAACTTATTACGTCC
AATGTACCGCTGGAAGACCTGTCTGCAGACAATGTCCACATGGATTGATC
TTCAACAACGACATCAAAGTTTGCGATTTCCCACCAGCCAAGAAACATTA
AACTCAAAACTCAAAAATTTTTACCATTTGTTTTTTAACTCTTTGTACAT
TAGGTTCTTTGTTTGATATGCAAAAAAAAAATTAATACATGCTCAATGAA
AT

Coding sequence (CDS) from alignment at scaffold_242:458400..460251-

>TCONS_00054339 ID=TCONS_00054339|Name=TCONS_00054339|organism=Clytia hemisphaerica|type=CDS|length=2208bp|location=Sequence derived from alignment at scaffold_242:458400..460251- (Clytia hemisphaerica)
GCCCAAAATCATTGTGCGCCGATTACCCACACAGCGACTACGTTGTCTTC
CGATACCCACACAAACCAACTTATTACGTCCAATGTACCGCTGGAAGACC
TGTCTGCAGACAATGTCCACATGGATTGATCTTCAACAACGACATCAAAG
TTTGCGATTTCCCACCAGCCAAGAAACATTAAGTCCTGACAGACTGTGTC
ATGGTGCATCCTTGGGATCCATCTTTGGATTAGGAGATAAACACCGAACA
CCCGATATCTTTGTCCAATGTGCACCAGGAGCTCATGGAAAACTGAGAGC
TGTTTGCCAAAAATGTCCACGACACCAAGTATTCAGCCGTAAATTCTCAG
TTTGTGTTCGACGTACTTTTGCTGTTTGCAAAGGAAAACATTGCAAACCA
CATGCTTTCAAACCACATCCAAAAGAATCTTGCTCAGCTGAATTCTACCA
CCCATTTTCATTTGAAATCATCACTTCAACTTTTGAATCAAGTTCAAGAA
GATCTCAAAACAACAAAAATGAAGACCATCATCTTGATCGCCATCTTCGC
TGGCCCAAAATCATTGTGCGCCGATTACCCACACAGCGACTACGTTGTCT
TCCGATACCCACACAAACCAACTTATTACGTCCAATGTACCGCTGGAAGA
CCTGTCTGCAGACAATGTCCACATGGATTGATCTTCAACAACGACATCAA
AGTTTGCGATTTCCCACCAGCCAAGAAACATTAAGTCCTGACAGACTGTG
TCATGGTGCATCCTTGGGATCCATCTTTGGATTAGGAGATAAACACCGAA
CACCCGATATCTTTGTCCAATGTGCACCAGGAGCTCATGGAAAACTGAGA
GCTGTTTGCCAAAAATGTCCACGACACCAAGTATTCAGCCGTAAATTCTC
AGTTTGTGTTCGACGTACTTTTGCTGTTTGCAAAGGAAAACATTGCAAAC
CACATGCTTTCAAACCACATCCAAAAGAATCTTGCTCAGCTGAATTCTAC
CACCCATTTTCATTTGAAATCATCACTTCAACTTTTGAATCAAGTTCAAG
AAGATCTCAAAACAACAAAAATGAAGACCATCATCTTGATCGCCATCTTC
GCTGGCCCAAAATCATTGTGCGCCGATTACCCACACAGCGACTACGTTGT
CTTCCGATACCCACACAAACCAACTTATTACGTCCAATGTACCGCTGGAA
GACCTGTCTGCAGACAATGTCCACATGGATTGATCTTCAACAACGACATC
AAAGTTTGCGATTTCCCACCAGCCAAGAAACATTAAGTCCTGACAGACTG
TGTCATGGTGCATCCTTGGGATCCATCTTTGGATTAGGAGATAAACACCG
AACACCCGATATCTTTGTCCAATGTGCACCAGGAGCTCATGGAAAACTGA
GAGCTGTTTGCCAAAAATGTCCACGACACCAAGTATTCAGCCGTAAATTC
TCAGTTTGTGTTCGACGTACTTTTGCTGTTTGCAAAGGAAAACATTGCAA
ACCACATGCTTTCAAACCACATCCAAAAGAATCTTGCTCAGCTGAATTCT
ACCACCCATTTTCATTTGAAATCATCACTTCAACTTTTGAATCAAGTTCA
AGAAGATCTCAAAACAACAAAAATGAAGACCATCATCTTGATCGCCATCT
TCGCTGGCCCAAAATCATTGTGCGCCGATTACCCACACAGCGACTACGTT
GTCTTCCGATACCCACACAAACCAACTTATTACGTCCAATGTACCGCTGG
AAGACCTGTCTGCAGACAATGTCCACATGGATTGATCTTCAACAACGACA
TCAAAGTTTGCGATTTCCCACCAGCCAAGAAACATTAAGTCCTGACAGAC
TGTGTCATGGTGCATCCTTGGGATCCATCTTTGGATTAGGAGATAAACAC
CGAACACCCGATATCTTTGTCCAATGTGCACCAGGAGCTCATGGAAAACT
GAGAGCTGTTTGCCAAAAATGTCCACGACACCAAGTATTCAGCCGTAAAT
TCTCAGTTTGTGTTCGACGTACTTTTGCTGTTTGCAAAGGAAAACATTGC
AAACCACATGCTTTCAAACCACATCCAAAAGAATCTTGCTCAGCTGAATT
CTACCACCCATTTTCATTTGAAATCATCACTTCAACTTTTGAATCAAGTT
CAAGAAGATCTCAAAACAACAAAAATGAAGACCATCATCTTGATCGCCAT
CTTCGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034263XLOC_034263Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054339-exon-scaffold_242-1575043694:460155..460251TCONS_00054339-exon-scaffold_242-1575043694:460155..460251Clytia hemisphaericaexon
TCONS_00054339-exon-scaffold_242-1575043694:459717..459743TCONS_00054339-exon-scaffold_242-1575043694:459717..459743Clytia hemisphaericaexon
TCONS_00054339-exon-scaffold_242-1575043694:459049..459294TCONS_00054339-exon-scaffold_242-1575043694:459049..459294Clytia hemisphaericaexon
TCONS_00054339-exon-scaffold_242-1575043694:458400..458682TCONS_00054339-exon-scaffold_242-1575043694:458400..458682Clytia hemisphaericaexon
TCONS_00054339-exon-scaffold_242-1510915933:460155..460251TCONS_00054339-exon-scaffold_242-1510915933:460155..460251Clytia hemisphaericaexon
TCONS_00054339-exon-scaffold_242-1510915933:459717..459743TCONS_00054339-exon-scaffold_242-1510915933:459717..459743Clytia hemisphaericaexon
TCONS_00054339-exon-scaffold_242-1510915933:459049..459294TCONS_00054339-exon-scaffold_242-1510915933:459049..459294Clytia hemisphaericaexon
TCONS_00054339-exon-scaffold_242-1510915933:458400..458682TCONS_00054339-exon-scaffold_242-1510915933:458400..458682Clytia hemisphaericaexon
TCONS_00054339-exon-scaffold_242-1491911889:460155..460251TCONS_00054339-exon-scaffold_242-1491911889:460155..460251Clytia hemisphaericaexon
TCONS_00054339-exon-scaffold_242-1491911889:459717..459743TCONS_00054339-exon-scaffold_242-1491911889:459717..459743Clytia hemisphaericaexon
TCONS_00054339-exon-scaffold_242-1491911889:459049..459294TCONS_00054339-exon-scaffold_242-1491911889:459049..459294Clytia hemisphaericaexon
TCONS_00054339-exon-scaffold_242-1491911889:458400..458682TCONS_00054339-exon-scaffold_242-1491911889:458400..458682Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054339-proteinTCONS_00054339-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:458400..460251 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0438641	0	0.0499081	0.104514	0.0341178	0.0196782	0.200445	0	0.105186	0.0313416	0	7.61135	4.87798	331.966	39.4119	3.06403	0.0390691	0.0759517	0.144128	0	0	0.179943	0.0608864	0.426429	0	0	0.0584656	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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