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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054338 ID=TCONS_00054338|Name=TCONS_00054338|organism=Clytia hemisphaerica|type=transcript|length=1150bp
ccccggctattaggtaccgagagtaatattttgatttcttcAATACAGTA
TTTACACAGTGTTAAATTGCacattttaatgttttcaagtttgttctttt
gtttcCCCTTCTAGGATTTGAATTACCCAACTGACAAGTTCGACCACATG
AGCGATTATCAACTCCAGAACTTCAAGAATCTAGTTGCTGATCCCTTGAC
ATATAGAGAACACCAATTTACATCTGTATTCACCGGAACTACCGGAAAAG
CTCCTAAACTTTCATGGATGGAAGATAAAGAGATGCCGAAGAAATGATTC
TACAAAATAGCCCTTGTTTTCCCGAGTTATCAACGATGCAAAATGTAAGG
AGTAACCAGCGATTTCAACAACCCATTTATTCGTCAATGATGGTGCAGAC
ATATTTAACAAAATTAGGAAGattaagaaactttcaatggtATCTTTTCC
CACTAGGCTTTCatactaaaataaatttttcttttctttaaagaataTTA
TTTCTAAGTAatttaaaacaaataaagaagaaataaaaagattgtaaaaa
aacaaaaaaacagaaagttttattCCGTAagttacaaaaacaaaaacatt
atgaaatcaaaaaatagGTCATCTTGTCTCGATACGAAAATAGTCACCGA
GCCTATATCGTGTCCATAAGTCTATATTCAATCTTTCGTTATAATTGGGA
GGTGATTCTTCAaacattatattttttatgtttttcgtcCATATTTATCA
AATGGATTTTCTCTCCATCCTTAGTTAATCCTAGCTCGATACTATTCGGC
TCTTGTGGTGAAACGCCTTCTAGATGTTTTCGAAAGACTCTCGCTTCTTC
ATGAAAAGCGTCAATAGTATAATACTGCACCTTGCGATCAGAGGGGTTAT
CAGTTTTCGGGTAAATTTGCATAAGTGCGTTTCGAACAGATGCATAGTGC
TCGTAAGACATTTCGCCCATCGCCTTTTCGAATCCATCTAAATTATCGAG
ATTTGGTTTCCGAGCATCGAGCAGCATTTGCGCTTTACGACGTCCATTTT
CTTCTGCTTGTGCGCGTAATGCGTCTTCGAAGTATTTACGAGCAGCGTCT
GCTTCGTATGATGCGTAATTATCGAGACATTGAAATTCAACGAtgtctga Run BLAST on NCBI transcript from alignment at scaffold_242:439623..442180- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054338 ID=TCONS_00054338|Name=TCONS_00054338|organism=Clytia hemisphaerica|type=transcript|length=2558bp|location=Sequence derived from alignment at scaffold_242:439623..442180- (Clytia hemisphaerica)
CCCCGGCTATTAGGTACCGAGAGTAATATTTTGATTTCTTCAATACAGTA
TTTACACAGTGTTAAATTGCACATTTTAATGTTTTCAAGTTTGTTCTTTT
GTTTCCCCTTCTAGGATTTGAATTACCCAACTGACAAGTTCGACCACATG
AGCGATTATCAACTCCAGAACTTCAAGAATCTAGTTGCTGATCCCTTGAC
ATATAGAGAACACCAATTTACATCTGTATTCACCGGAACTACCGGAAAAG
CTCCTAAACTTTCATGGATGGAAGATAAAGAGATGCCGAAGAAATGATTC
TACAAAATAGCCCTTGTTTTCCCGAGTTATCAACGATGCAAAATGTAAGG
AGTAACCAGCGATTTCAACAACCCATTTATTCGTCAATGATGGTGCAGAC
ATATTTAACAAAATTAGGAAGATTAAGAAACTTTCAATGGTATCTTTTCC
CACTAGGCTTTCATACTAAAATAAATTTTTCTTTTCTTTAAAGAATATTA
TTTCTAAGTAATTTAAAACAAATAAAGAAGAAATAAAAAGATTGTAAAAA
AACAAAAAAACAGAAAGTTTTATTCCGTAAGTTACAAAAACAAAAACATT
ATGAAATCAAAAAATAGGTCATCTTGTCTCGATACGAAAAGAGTCACCGA
GTCTATATCGTGTCCATAAGTCTATATTCNGCAAAAACAAAAACATTATT
TTGAAATCAACAAGCAACATGCTGAATGGACCTACCTGATGATGAAAGTT
AGTTAGCAATGCGAAAAGAAAAATGAAAAAAATCAGTCAGAAAATATAGC
ATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGTTATCAATAATGTTTTT
GTGTGAAAAACATAGAAATACAAGGAAAAAATCCAATGAAAATCTGCGAA
AACGGCGATTTCCAGCGACCGGAAAAATTTTTTTCTCAAAAATCGAACTC
GGCCTTTTTTTGAGCATTGCTAATACGCATCTTTCTGCAAAAAATCAGAA
AAAACTAAAAATGAAAATTCGAGAAAAAGTCAAAAAACCGGTTTTCCGGC
ATATTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGAACGAACG
AACGGACGAACGAACGAACGAACGAACGGACAAGGGTTAATTTAAAGGAC
TACCTTAGGAAGGTCCAAAAAATAGGTCATCTTGTCTCGATACGAAAATA
GTCACCGAGCCTATATCGTGTCCATAAGTCTATATTCAATCTTTCGTTAT
AATTGGGAGGTGATTCTTCAAACATTATATTTTTTATGTTTTTCGTCCAT
ATTTATCAAATGGATTTTCTCTCCATCCTTAGTTAATCCTAGCTCGATAC
TATTCGGCTCTTGTGGTGAAACGCCTTCTAGATGTTTTCGAAAGACTCTC
GCTTCTTCATGAAAAGCGTCAATAGTATAATACTGCACCTTGCGATCAGA
GGGGTTATCAGTTTTCGGGTAAATTTGCATAAGTGCGTTTCGAACAGATG
CATAGTGCTCGTAAGACATTTCGCCCATCGCCTTTTCGAATCCATCTAAA
TTATCGAGATTTGGTTTCCGAGCATCGAGCAGCATTTGCGCTTTACGACG
TCCATTTTCTTCTGCTTGTGCGCGTAATGCGTCTTCGAAGTATTTACGAG
CAGCGTCTGCTTCGTATGATGCGTAATTATCGAGACATTGAAATTCAACG
ATGTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054338-exon-scaffold_242-1575043694:441564..442180 | TCONS_00054338-exon-scaffold_242-1575043694:441564..442180 | Clytia hemisphaerica | exon |
| TCONS_00054338-exon-scaffold_242-1575043694:439623..440155 | TCONS_00054338-exon-scaffold_242-1575043694:439623..440155 | Clytia hemisphaerica | exon |
| TCONS_00054338-exon-scaffold_242-1510915933:441564..442180 | TCONS_00054338-exon-scaffold_242-1510915933:441564..442180 | Clytia hemisphaerica | exon |
| TCONS_00054338-exon-scaffold_242-1510915933:439623..440155 | TCONS_00054338-exon-scaffold_242-1510915933:439623..440155 | Clytia hemisphaerica | exon |
| TCONS_00054338-exon-scaffold_242-1491911889:441564..442180 | TCONS_00054338-exon-scaffold_242-1491911889:441564..442180 | Clytia hemisphaerica | exon |
| TCONS_00054338-exon-scaffold_242-1491911889:439623..440155 | TCONS_00054338-exon-scaffold_242-1491911889:439623..440155 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:439623..442180 - |
Blast
The following BLAST results are available for this feature:
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