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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054332 ID=TCONS_00054332|Name=TCONS_00054332|organism=Clytia hemisphaerica|type=transcript|length=599bp
ctgaaacatCGTAATTATGACAGGAAAAtcttcaaatcaaaaacaaacgA
CGAATGGAAGATGATCGACTCTTACAGGATTTAAAAAATACTTAATTTGA
TAGATAAGGAATTTTGGGTAACCTATCTTGATAGAAATGGAGACTCCACA
AAATAAATTCATCGAAAAAGTCTACGAAAAAGCCAATGAGATCGATGCGA
CTTTCGTATTGGCGAACGCTGCGTTGGACTTTTATCCGATCATATATTGC
AGTCAAGGATTTTTCGGAGATGTTGGTTGGACTAGAAATGAAGTCACCAC
AAAAGATGTCTATCTCAACTTCATgatgggcaaaaggaccgacaaGAAAT
GCATACGGACATACGAGAAGGGAATATTGAACAAAGAATTCACTCAAGTA
GAAATGATCTTGTATAGCAAGGGAGGCACGAAGAGATGGTTTTTGGTGAC
ATTACTACCAGTGAAAGATACCGAagaaaatatttccattttCATCGTCT
TTTTCAATTACATGTCACATTACCATGACCCTATACCAGATTCTCCGAAA
CGTTTATGGAAAATCGTGACACGTGGCGCACTCAATAAACCAAGTCTTG Run BLAST on NCBI transcript from alignment at scaffold_242:369788..372117- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054332 ID=TCONS_00054332|Name=TCONS_00054332|organism=Clytia hemisphaerica|type=transcript|length=2330bp|location=Sequence derived from alignment at scaffold_242:369788..372117- (Clytia hemisphaerica)
CTGAAACATCGTAATTATGACAGGAAAATCTTCAAATCAAAAACAAACGA
CGAATGGAAGATGATCGACTCTTACAGGATTTAAAAAATACTTAATTTGA
TAGATAAGGAATTTTGGGTAACCTATCTTGATAGAAATGGAGACTCCACA
AAATAAATTCATCGAAAAAGTCTACGAAAAAGCCAATGAGATCGGTAAGG
AGTTTCTTAAGATCTCGTATCAGCATGAGTTGAGATACCTTAAGGGAACT
AATTTTTACGAGCTAAAAACCCTGAAAATTTTTAATTTCGGCGAGAACTT
ATTCTGGCGATTGATGATTTTTTTAAATTTTAGCGGGCACTAATTTTGGG
GTGAGCTGGAGTTTTTATAAGATACTTCACTAATTGGTCATTTGAAGTAA
TAGAGACGCGTTCTTTAGAAAAAGTAATGAAATTAGCGACCAACCAAATC
ACATGAGAGCTTGTAAAAACTCCAGCTTGTCCCCTAATTTTGGCGAATGA
CAGCATAAATCTGTTCTATTTTGCCTTGTCTGAAGCTTTTTTTGTGAACT
CAAGATGTTATTTAAACTAAATACTTAAAAATTTAATTTTGGCGAGAACT
TATTTTGGCGACTGAGCAAAATATTTAATTTTGGCGAGAACTAATTCACC
AAAATTAGTTCCGGCCAAAATAAGTTCTCTTAAAGTAGATACTTATCCAG
AGTATTTCACGAAAAGCAAAAATAATTATGATGACCTTAATGATAGGGAC
AAACCTGGAAGGACGCTTATCCCATCCATAGGGATTAAGCCGGGGAAATT
ATTTACGATTCAAAACGTTATAGTAATTTTTGACCGAAATTTGTAGATCA
GGTAAATAAGGTAACGAATCTAAAGCCGAAAAGAGAATGTCACGTGATTA
TTCACAGACTAATTTTCTGCTAACAAAAATCGATTCTTCGGATTTTTTTT
CTATTGAAATCAAAAGTTTCGGTCGGGAGTTTAATTTGCTCTATTTATTA
CATAGATGCGACTTTCGTATTGGCGAACGCTGCGTTGGACTTTTATCCGA
TCATATATTGCAGTCAAGGATTTTTCGGAGATGTTGGTTGGACTAGAAAT
GAAGTCACCACAAAAGATGTCTATCTCAACTTCATGATGGGCAAAAGGAC
CGACAAGAAATGCATACGGACATACGAGAAGGGAATATTGAACAAAGAAT
TCACTCAAGTAGAAATGATCTTGTATAGCAAGGGAGGTAAACTGATTTCT
TTAAAGTTCAAAAATAGCCTGAAACAAGGTTCATCTTCTTCATATATCCA
CTTGGAATTATTTTTCCAACAATATATAACTTTTAATTGTATCTTTATTC
CTTCAAAAGACAAGTGTATAAAAATGTGTGGATTGTCAATATTTTCCGGA
GAAGACTTTTAGTTTTAACAAAAGAAGGCTGTATGCATCCCCTCTAATAT
GTTTTGATATATGGGATCGGATGCTAGCCCGGGATCAAAACATATCAGAG
ATTATGCGTGCAGCCTAGAACTAAAGCTTTAGTTGAATCACACTAACAGG
GTCAACGAAACCCAACAACAAATCATATTATTACTGTACCTTTATAGGCA
CGAAGAGATGGTTTTTGGTGACATTACTACCAGTGAAAGATACCGAAGAA
AATATTTCCATTTTCATCGTCTTTTTCAATTACATGTCACATTACCATGA
CCCTATACCAGGTAAAAATTCTAACTCGAACAAGTTGTTTTCTCGTTCCT
TTAGATGATAAACCTAATTACATAACTCGAAATTTCGTGTTGTGTTACCC
GTGCGTGTTCAGTAAGACACCTCGCTGAAGCTGTATTCTTTTCCACCGTT
TAACATATACGCATTTTTGCGTTTCCGCGAGATTTCGGCCTAATCAGATC
GACCAGATTTTAAAAATGAATTCAGTATTCACTATAACAAAATTTCAACT
AAACCAATTTTCATTCTGCAAGTTTCTCAATTGGTTTATCTTGTATAAGG
TTTGCTAACTCGCTTTGATCTTGAGAGAAATAACTGCATCAAGTAGAAAA
TTCGAGTCATATTTTTAAAGAGGAATCCTCAAAAAGCAAGTACATTGGAG
TCTCTTTAACTCGAATGTCTCCTTAATCCGAACAAGTTTTTCGTCCTTTC
CCTTCAGTTAACAATGAAATTCCTTTTACATCGAAAAAAATCCTCGTGCG
TGTTCGAGTTATCAAGACTCCACTGTACCAGTTTTCATTGATCTGATCTT
TAATGATATAATACCTTTAGATTCTCCGAAACGTTTATGGAAAATCGTGA
CACGTGGCGCACTCAATAAACCAAGTCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054332-exon-scaffold_242-1575043694:371924..372117 | TCONS_00054332-exon-scaffold_242-1575043694:371924..372117 | Clytia hemisphaerica | exon |
| TCONS_00054332-exon-scaffold_242-1575043694:370882..371112 | TCONS_00054332-exon-scaffold_242-1575043694:370882..371112 | Clytia hemisphaerica | exon |
| TCONS_00054332-exon-scaffold_242-1575043694:370407..370520 | TCONS_00054332-exon-scaffold_242-1575043694:370407..370520 | Clytia hemisphaerica | exon |
| TCONS_00054332-exon-scaffold_242-1575043694:369788..369847 | TCONS_00054332-exon-scaffold_242-1575043694:369788..369847 | Clytia hemisphaerica | exon |
| TCONS_00054332-exon-scaffold_242-1510915933:371924..372117 | TCONS_00054332-exon-scaffold_242-1510915933:371924..372117 | Clytia hemisphaerica | exon |
| TCONS_00054332-exon-scaffold_242-1510915933:370882..371112 | TCONS_00054332-exon-scaffold_242-1510915933:370882..371112 | Clytia hemisphaerica | exon |
| TCONS_00054332-exon-scaffold_242-1510915933:370407..370520 | TCONS_00054332-exon-scaffold_242-1510915933:370407..370520 | Clytia hemisphaerica | exon |
| TCONS_00054332-exon-scaffold_242-1510915933:369788..369847 | TCONS_00054332-exon-scaffold_242-1510915933:369788..369847 | Clytia hemisphaerica | exon |
| TCONS_00054332-exon-scaffold_242-1491911889:371924..372117 | TCONS_00054332-exon-scaffold_242-1491911889:371924..372117 | Clytia hemisphaerica | exon |
| TCONS_00054332-exon-scaffold_242-1491911889:370882..371112 | TCONS_00054332-exon-scaffold_242-1491911889:370882..371112 | Clytia hemisphaerica | exon |
| TCONS_00054332-exon-scaffold_242-1491911889:370407..370520 | TCONS_00054332-exon-scaffold_242-1491911889:370407..370520 | Clytia hemisphaerica | exon |
| TCONS_00054332-exon-scaffold_242-1491911889:369788..369847 | TCONS_00054332-exon-scaffold_242-1491911889:369788..369847 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:369788..372117 - |
Blast
BLAST of TCONS_00054332 vs. Swiss-Prot (Human)
Match: KCNH1 (Potassium voltage-gated channel subfamily H member 1 OS=Homo sapiens GN=KCNH1 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 5.002e-21 Identity = 46/144 (31.94%), Postives = 75/144 (52.08%), Query Frame = 2
Query: 143 TPQNKFIEKVYEKANEIDATFVLANAALDFYPIIYCSQGFFGDVGWTRNEVTTKDVYLNFMMGKRTDKKCIRTYEKGILNKEFTQVEMILYSKGGTKRWFLVTLLPVKDTEENISIFIVFFNYMSHYHDPIPDSPKRLWKIVTR 574
PQN F+E + ++N D FVL NA + +PI+Y + GF G+ R EV K +FM G+ TDK I + N E E+++Y K T WF V + P+++ ++ + +F+ F+ ++ + PI D + W R
Sbjct: 12 APQNTFLENIVRRSN--DTNFVLGNAQIVDWPIVYSNDGFCKLSGYHRAEVMQKSSTCSFMYGELTDKDTIEKVRQTFENYEMNSFEILMYKKNRTPVWFFVKIAPIRNEQDKVVLFLCTFSDITAFKQPIEDDSCKGWGKFAR 153
The following BLAST results are available for this feature:
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