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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054313 ID=TCONS_00054313|Name=TCONS_00054313|organism=Clytia hemisphaerica|type=transcript|length=408bp
GGTGTATTGGAAAATGTGACGGCGCCGAATTCAACAACGATCATGGCTGG
TGGAAATCCCATCGTGTACAAGAATATCACTTCTCTAAAGAACGCCCTGC
AAAACGAAGAAATCAAAGCTATCGCAATGGAATCCTCCATGATGCAATAC
TACCAGAAAGACTTGGATGATCTCGGTTCCGAATATTTTGTTCAGCTGAA
ACTGGAAGTATCGGAAAACGGTATAGGATTTATGGCACTTGATCCACAAC
TTGCCAAAATGACTCGAAATTTCTATGAGGAAAATCAGGATAATATATAC
ACGTTTTGGCATGAATCTCATAAAAGATATCTCGGAATAGAAAGTACGCT
GGATTTCCACGAAGAAAATTCAGAATCAACACAGACGACAGTACACGGTA
AAGAAATA Run BLAST on NCBI protein sequence of TCONS_00054313-protein >TCONS_00054313-protein ID=TCONS_00054313-protein|Name=TCONS_00054313-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
GVLENVTAPNSTTIMAGGNPIVYKNITSLKNALQNEEIKAIAMESSMMQY
YQKDLDDLGSEYFVQLKLEVSENGIGFMALDPQLAKMTRNFYEENQDNIY
TFWHESHKRYLGIESTLDFHEENSESTQTTVHGKEI Run BLAST on NCBI transcript from alignment at scaffold_242:107817..112506- Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054313 ID=TCONS_00054313|Name=TCONS_00054313|organism=Clytia hemisphaerica|type=transcript|length=4690bp|location=Sequence derived from alignment at scaffold_242:107817..112506- (Clytia hemisphaerica)
GGTGTATTGGAAAATGTGACGGCGCCGAATTCAACAACGATCATGGCTGG
TGGAAATCCCATCGGTAAGACACCTTCAAAAATACACCCCTGTGTCACAG
ACCCACTTGGACCCCAGTCCCAATGGAAAGTTTGGCAAAAACTTCATCCC
CGGTTGGAAAAAAAAACCCTGTAATTTCAGCCCTACTGAGAAATTGACTT
TGATTTCGTTCCCATTCAAAATTCCATGTTTAAAAATTGCATTCCAAAAA
CTGGGTTTTTTAACCTTGGAACAATAGAATTTCTATCCACATTGGGATTT
CAATCGGAATTTTTATCCCCACTGAGGAAATAAGTTCCACCGGGGCTGTG
AGACAGGGGTGTTGGAATTCTTCACAATAAAATGAGTTAAAATTTTGAAA
GAAGGTCAAATAAAGTGAAAAGACAAAAATTTAAAGTTGATAACAGAGAT
TACCATCGACAACTATTTTCATACACTTTCGTATTTGGTTACTTTATTCA
CCTTTAGTGTACAAGAATATCACTTCTCTAAAGAACGCCCTGCAAAACGA
AGAAATCAAAGGTAAGGCGCTAAATACTAAAATGTTGAAGGCGGAAAAAA
CATTCTCAATACTTTTCTCATCAAAAAGAAACCCGTACTGATTGTAAGTT
TGGAAGACACAAATTTGAAATACCTTATCGGGAAGATTTTCGTCAGGGAA
AAATTCGTCACTTGCTGGTAATTGGTAAACGCATTAAGGCCGAGGAAAAT
TTTCGTCGGGGAAAATATTCATCACTTGTCCAAAATTTCGTCACTTTTCC
GACAAAGTTTTCCCCGATAAGGTAATGGGTCTAGTGCAGATTGTTGCGGT
TTTCGTCTAACAAGTTTGACATGAAGAGGTTCTCCGTAAGATCTTCAGTG
AATCGAGGCACAAAAGAAGCAAATCCAAAATGGTTCATACTTCTGACCTA
TACAGTAACAAAAAACATTCTCAATCTCGTACCCAGAACCATTTTTTGAC
TTTACTGCTGGACGTTGGTACAACGTTTCATGAACGTTATCAGAATGAGA
AAAGAAAACTAAGAAACTGCGTTCAAGTCTGAAAACATTTCTACATTCTA
ATCACAATTTTAGCTATCGCAATGGAATCCTCCATGATGCAATACTACCA
GAAAGACTTGGATGATCTCGGTTCCGAATATTTTGTTCAGCTGAAACTGG
AAGTATCGGAAAACGGTATAGGATTTATGGCACTTGATCCACAACTTGCC
AAAATGACTCGAAATTTCTATGAGGAAAATCAGGATAATATATACACGTT
TTGGCATGAATCTCATAAAAGATATCTNTTTATAAAGGTTGTTTTTTTTA
TATAAAAGTGATATCGTTTGCTTACTCATCAATTTTAATTCACAAGCTTT
TTCATATTGGATTGACACGGATGTGGAGCAGGATTGGCCAGAAAGAGGAA
AAGAAAAACATTTTTGCTTATATCAGCATAACAATAGGGAGACACTGTCC
CAGTGGCGTTGTGGGAAAATTTTTCTGGAGGGGCCAAAGTCAATTTTTTT
TAGATGGCGCCCCCCCCCNAATCCCATCGGTAAGACACCTTCAAAAATAC
ACCCCTGTGTCACAGACCCACTTGGACCCCAGTCCCAATGGAAAGTTTGG
CAAAAACTTCATCCCCGGTTGGAAAAAAAAACCCTGTAATTTCAGCCCTA
CTGAGAAATTGACTTTGATTTCGTTCCCATTCAAAATTCCATGTTTAAAA
ATTGCATTCCAAAAACTGGGTTTTTTAACCTTGGAACAATAGAATTTCTA
TCCACATTGGGATTTCAATCGGAATTTTTATCCCCACTGAGGAAATAAGT
TCCACCGGGGCTGTGAGACAGGGGTGTTGGAATTCTTCACAATAAAATGA
GTTAAAATTTTGAAAGAAGGTCAAATAAAGTGAAAAGACAAAAATTTAAA
GTTGATAACAGAGATTACCATCGACAACTATTTTCATACACTTTCGTATT
TGGTTACTTTATTCACCTTTAGTGTACAAGAATATCACTTCTCTAAAGAA
CGCCCTGCAAAACGAAGAAATCAAAGGTAAGGCGCTAAATACTAAAATGT
TGAAGGCGGAAAAAACATTCTCAATACTTTTCTCATCAAAAAGAAACCCG
TACTGATTGTAAGTTTGGAAGACACAAATTTGAAATACCTTATCGGGAAG
ATTTTCGTCAGGGAAAAATTCGTCACTTGCTGGTAATTGGTAAACGCATT
AAGGCCGAGGAAAATTTTCGTCGGGGAAAATATTCATCACTTGTCCAAAA
TTTCGTCACTTTTCCGACAAAGTTTTCCCCGATAAGGTAATGGGTCTAGT
GCAGATTGTTGCGGTTTTCGTCTAACAAGTTTGACATGAAGAGGTTCTCC
GTAAGATCTTCAGTGAATCGAGGCACAAAAGAAGCAAATCCAAAATGGTT
CATACTTCTGACCTATACAGTAACAAAAAACATTCTCAATCTCGTACCCA
GAACCATTTTTTGACTTTACTGCTGGACGTTGGTACAACGTTTCATGAAC
GTTATCAGAATGAGAAAAGAAAACTAAGAAACTGCGTTCAAGTCTGAAAA
CATTTCTACATTCTAATCACAATTTTAGCTATCGCAATGGAATCCTCCAT
GATGCAATACTACCAGAAAGACTTGGATGATCTCGGTTCCGAATATTTTG
TTCAGCTGAAACTGGAAGTATCGGAAAACGGTATAGGATTTATGGCACTT
GATCCACAACTTGCCAAAATGACTCGAAATTTCTATGAGGAAAATCAGGA
TAATATATACACGTTTTGGCATGAATCTCATAAAAGATATCTCGGAATAG
AAAGTGTAAGAACCATTGTCATTTCTTTTAATAATCAAGAACTACCTTTC
CTTCAAAGTCTGGTCACCTCCGAAGCAATTTTTTCATTGCCTCGTTTTTT
AAAGGATATCATTGAACGTATCTCCTACCATCTGCTTACACAGCATTTTC
AAGCAAAAGAAAAGAACTTCTCCTTTACCACGCCGCGTGAGCACAAAATT
TGTGTTTATTCTACTTTGTTAGCATAAGAAGCACACTTCATCCTAGACAG
GAACCCGTCTGCGTATTTTTTTTAAATCTGATGAATACTTGACGGGTCAG
AGCTGTGAGTCCGATTTTGGACTCAAAAAAATTACAGTGGGAANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTGTTTTCAACCGTTATTAGGATATGGGAAATTCAAA
CTGTCAGCCCATACCATGCTATATATTTCGCCATCAGTATATAGAATAAG
AAATCATAGCATGGATTTCCAGGCTAACTTCATCCTATATCATAGATTAT
GATTTTTAACTATTCATGATATTCATGACGTAATGTTTTCTACGGAAATA
CCCCAGCTTTAGCCAGTAATGGCAAATTTAAACTGGACAAAAGTTGTATT
CATGACATGCACCATTGCAATGTCTTCCATTCCACCCAATAGCTGATTGG
TTGAAAGTGACGTATTGACTGATTTTACGTCACTTACAACCAATGAGCGA
TTGGTTCCGTGATGTAATGTCAGAAGACATTGCAGTGGTGCATATCATGA
ATAGAATTTTCCACTACTGACAAAAACCGGGGTATTCCGTAGATCAAATT
ACGTCATGAGAGGGCCGGCGAATCGGTTTTAAAAGTGAGGGGGCTAAATG
ATTATAGTGACTAAGGAGGCCCCACCATGGTTGGAAAATTTTTGAAATTA
TGGTACTCTACATTGGCTTAGAAGTGATCTAAATTTAATTTTTATGAAGT
TATTGGAATGAAAAAATCAAAGAAATTAAAAANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGGGGGGGCTATAGCCCCCCTAGCCCCC
CCGGTTTCGCCGGCCCTGCATGAAGATCATGAATCACACGTTATGATGAT
CCAAAACTTTCAAAACATTTCATTTAGACGCTGGATTTCCACGAAGAAAA
TTCAGAATCAACACAGACGACAGTACACGGTAAAGAAATA Coding sequence (CDS) from alignment at scaffold_242:107817..112506- >TCONS_00054313 ID=TCONS_00054313|Name=TCONS_00054313|organism=Clytia hemisphaerica|type=CDS|length=1632bp|location=Sequence derived from alignment at scaffold_242:107817..112506- (Clytia hemisphaerica)
ACGCTGGATTTCCACGAAGAAAATTCAGAATCAACACAGACGACAGTACA
CGGTAAAGAAATACTATCGCAATGGAATCCTCCATGATGCAATACTACCA
GAAAGACTTGGATGATCTCGGTTCCGAATATTTTGTTCAGCTGAAACTGG
AAGTATCGGAAAACGGTATAGGATTTATGGCACTTGATCCACAACTTGCC
AAAATGACTCGAAATTTCTATGAGGAAAATCAGGATAATATATACACGTT
TTGGCATGAATCTCATAAAAGATATCTCGGAATAGAAAGTTGTACAAGAA
TATCACTTCTCTAAAGAACGCCCTGCAAAACGAAGAAATCAAAGGGTGTA
TTGGAAAATGTGACGGCGCCGAATTCAACAACGATCATGGCTGGTGGAAA
TCCCATCGACGCTGGATTTCCACGAAGAAAATTCAGAATCAACACAGACG
ACAGTACACGGTAAAGAAATACTATCGCAATGGAATCCTCCATGATGCAA
TACTACCAGAAAGACTTGGATGATCTCGGTTCCGAATATTTTGTTCAGCT
GAAACTGGAAGTATCGGAAAACGGTATAGGATTTATGGCACTTGATCCAC
AACTTGCCAAAATGACTCGAAATTTCTATGAGGAAAATCAGGATAATATA
TACACGTTTTGGCATGAATCTCATAAAAGATATCTCGGAATAGAAAGTTG
TACAAGAATATCACTTCTCTAAAGAACGCCCTGCAAAACGAAGAAATCAA
AGGGTGTATTGGAAAATGTGACGGCGCCGAATTCAACAACGATCATGGCT
GGTGGAAATCCCATCGACGCTGGATTTCCACGAAGAAAATTCAGAATCAA
CACAGACGACAGTACACGGTAAAGAAATACTATCGCAATGGAATCCTCCA
TGATGCAATACTACCAGAAAGACTTGGATGATCTCGGTTCCGAATATTTT
GTTCAGCTGAAACTGGAAGTATCGGAAAACGGTATAGGATTTATGGCACT
TGATCCACAACTTGCCAAAATGACTCGAAATTTCTATGAGGAAAATCAGG
ATAATATATACACGTTTTGGCATGAATCTCATAAAAGATATCTCGGAATA
GAAAGTTGTACAAGAATATCACTTCTCTAAAGAACGCCCTGCAAAACGAA
GAAATCAAAGGGTGTATTGGAAAATGTGACGGCGCCGAATTCAACAACGA
TCATGGCTGGTGGAAATCCCATCGACGCTGGATTTCCACGAAGAAAATTC
AGAATCAACACAGACGACAGTACACGGTAAAGAAATACTATCGCAATGGA
ATCCTCCATGATGCAATACTACCAGAAAGACTTGGATGATCTCGGTTCCG
AATATTTTGTTCAGCTGAAACTGGAAGTATCGGAAAACGGTATAGGATTT
ATGGCACTTGATCCACAACTTGCCAAAATGACTCGAAATTTCTATGAGGA
AAATCAGGATAATATATACACGTTTTGGCATGAATCTCATAAAAGATATC
TCGGAATAGAAAGTTGTACAAGAATATCACTTCTCTAAAGAACGCCCTGC
AAAACGAAGAAATCAAAGGGTGTATTGGAAAATGTGACGGCGCCGAATTC
AACAACGATCATGGCTGGTGGAAATCCCATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054313-exon-scaffold_242-1575043694:112443..112506 | TCONS_00054313-exon-scaffold_242-1575043694:112443..112506 | Clytia hemisphaerica | exon |
| TCONS_00054313-exon-scaffold_242-1575043694:110431..110484 | TCONS_00054313-exon-scaffold_242-1575043694:110431..110484 | Clytia hemisphaerica | exon |
| TCONS_00054313-exon-scaffold_242-1575043694:109652..109878 | TCONS_00054313-exon-scaffold_242-1575043694:109652..109878 | Clytia hemisphaerica | exon |
| TCONS_00054313-exon-scaffold_242-1575043694:107817..107879 | TCONS_00054313-exon-scaffold_242-1575043694:107817..107879 | Clytia hemisphaerica | exon |
| TCONS_00054313-exon-scaffold_242-1510915933:112443..112506 | TCONS_00054313-exon-scaffold_242-1510915933:112443..112506 | Clytia hemisphaerica | exon |
| TCONS_00054313-exon-scaffold_242-1510915933:110431..110484 | TCONS_00054313-exon-scaffold_242-1510915933:110431..110484 | Clytia hemisphaerica | exon |
| TCONS_00054313-exon-scaffold_242-1510915933:109652..109878 | TCONS_00054313-exon-scaffold_242-1510915933:109652..109878 | Clytia hemisphaerica | exon |
| TCONS_00054313-exon-scaffold_242-1510915933:107817..107879 | TCONS_00054313-exon-scaffold_242-1510915933:107817..107879 | Clytia hemisphaerica | exon |
| TCONS_00054313-exon-scaffold_242-1491911889:112443..112506 | TCONS_00054313-exon-scaffold_242-1491911889:112443..112506 | Clytia hemisphaerica | exon |
| TCONS_00054313-exon-scaffold_242-1491911889:110431..110484 | TCONS_00054313-exon-scaffold_242-1491911889:110431..110484 | Clytia hemisphaerica | exon |
| TCONS_00054313-exon-scaffold_242-1491911889:109652..109878 | TCONS_00054313-exon-scaffold_242-1491911889:109652..109878 | Clytia hemisphaerica | exon |
| TCONS_00054313-exon-scaffold_242-1491911889:107817..107879 | TCONS_00054313-exon-scaffold_242-1491911889:107817..107879 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:107817..112506 - |
Blast
The following BLAST results are available for this feature:
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