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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054264 ID=TCONS_00054264|Name=TCONS_00054264|organism=Clytia hemisphaerica|type=transcript|length=2992bp
tttcatttgatgataagaccatagtataagaaagccgcggctggaatgat
aacatctgaatttctgttattctatctctgtcgtatttgatgactatttg
ttgatcaagNACTTATCCATAATTTCATCTGATACTTTTGCAGGGATCCA
TTCTCAAAGCGATATTGGGCGTGTCCAAACTCGAGACGAAAGTAAAGTTG
TCATTGGAtatgatgacatcatcactAATTCCAATGATTACGTAATAATT
TCAGGTGTTCCGGGAAGTGGAAAAACAACATTAGCGGAAACACTGCTGTA
CAGCTGGAGCTGTGAGGGATTATGGCATAATACAGCCCAGGTTGACTCAC
AagaaaaaggtgtaaagaaaaaagtccactttgattttgttttcgttCTG
TATTTTCGACAATTAGTGCGTTTTCGAAAGGACAACACAATAACAGCGGA
AAAACTGTTGGATTTCTTTTATCCAAACTACGGATTCAATGATGGTGCAT
TATTGAAAGAACTGAAAAAGTATGATCGTAAAGCTTTGATAGTATTGGAA
GGTTTTGATGAGTTTGCCAACAAAAGAGACTTCGTTGATCAACCAGAAGA
AGAATGGTCAAGCCTTTCGCGTAGCATACACGATTTGATGAATCCCGAAA
ATCCTACTTTTGATGGTATATTAACACGCGTGGTATCTAGTCGACCGGGA
AGTTGCTCTTTATTAATGGATACATTTTTCCCGCGCTCATCGAGACATAA
ACATTGGAGAAAAATAATCGAGGTAACTGGTTTCAATAAACAAAACATCG
ACCTCTACATTCAAAAACATGTGCGCGATGATCAAAAGGTGAAACAGgtt
caagagaaaattgatgaTTCCCAAATGCTTGGTAAAATGATTGCAATTCC
TTTCTATGCGTGGGGAATCTGTTATCTTTTGAACAGTACAGATAATACTG
AGGGAATCTCCGTTCACACTTATACTTCGCTCTTTTGCAATCTACTCCCA
TTGTTTTTGAGATCACACAGTGCTACTCGGAAAAACCNCGCTCTTTTGCA
ATCTACTCCCATTGTTTTTGAGATCACACAGTGCTACTCGAAAAAACCAA
TTTGGTTGTTCGACCAGAAACATCTTAGAAGATCCAAAAGTTCACCAGGA
ATTGCTGACACTTGCTAAAATGGCTTTTCAACTTGAAGTTGAAGgtAAAA
TCGCTTTTACTTCGGAAGAGATCATTAGTGGAGAATTGTCAATGAAAGAA
GTGTTGGATGATACTGGTTTAATTATCGAAATTGATTACCCGGATTCAAT
AGAGGGTACCCGGTACCAATTTCTTCATTATTCATTCAATGAGTTTCTGA
CTGCTTTACATTTATTTGATACCGGAACAGTAGATGCCCGGATCACAAAT
CCGTATATCTTATCAATGTTATCCGGATTGGTTGGAGGTTCTCTTTACGA
CTCACAATCTTCGCCAATCGTAAGAAAGTTCACATCCATTTTTACAAAGT
CTTCAACAGAATCTAGAAAGGAATTATTGGTTGATCACTTATTAGCAAAA
GAGCCTAAAAATCCTCAACATTTTTTCATTGACGGTAAAGCATATTATCT
GAGTGTATTTTATgagtatcaaaacaaaatagaatATAACGAACACTTAC
ATATTCAGATTACCAATGGTTCATTGAacaattatgaaaaacaatGTCTG
GATTATTTAGAGAAACAAGCTACCAAAGGAATGTTTCGTTTAAAATCTGT
CACCTTATCTTCCTTCAAATGTCCGTTGGAAAGTGACGAAGCGAAACGGT
TGCACTCGCTCTTCATGCTACACACTAAAAATGTTAACGTTTCTTTTAAT
AATATTATTCAAGTCTCGCAACTTGCCGAGGTTATCAAGGATCATGTTAT
CCATTTAAAACCCGATTTCAAAATCCAACGGTTATTTTTCCTAACATTGC
CAAACACAGATATGTCAAAGGCTGCTCCTATTCTACCCTTTGTTCATGGG
TTGGAGACCAATGGGTATTTATCACAGCTTCGTCAATTGTGTACTGCAGC
ATCAGTCAAGCTGAGAGAAGGTCAACCAGCTCCGTACAGGCTCACTTATC
ATTCTCCATTCAGCTTAACGGCTGAAGAGCTAATCGAATGTGGCTTGAAT
ATATTCCAGGAAATTATACTGGCTTATAATCCGTACATACAACATATGGG
AGCTTATAAACATCAACATGCAAGGGATTGTATTGCATTTGAATCGTGGA
AAAAAATGAGGTTAATGTCAGTCAAGATCTGGTGTGGCTTGCAAACTAGT
ACATCAGCCATCAGCGAACAACTTGAGCAAAAGATAAAACGCATTGGTGC
ATCTTGTATGCGAGGATATCTTTATGAAGGTGAACCAACAATCTTCGACC
ATTCAGATGAAATCGAAAATATATCAATGAGGAAACCCCGTGAGACATAT
ATTCGAATGCCACCAGGAGTTCGATCATTAAAGGATTATCTTCGCCTTGG
TGTAGAGAGCCAATCCCAAGATCCCTAATAACTTACAACTGGCCTCCGTG
CGtcgtagaattttttttcaggcaacTNATCCCTAATAACTTACAACTGG
CCTCCGTGCGTCGTAGAATCTTTTTTCAGGCAACTTGAAAATATATCTTC
AACCATTAAAATGAATAATCGACGAATGACAGCTACAGATAAGATTAAAT
CCAATCCAAACGATCGATTAGATTAGAAGCAAATATTTAAGTTCACGATT
AAACTATACCGtcatttctctaatttaatgCGGCCgattaaataaatatt
tttgaggtGTCGCACTCATAATGGGAGaaaataaattactttgaaCCGTT
GACTTTCCTATCGCACTAAAGATTAGAGGAGAAATCTAGTTTATCCGCAC
TAACTTGAAGGAaaagtaccgtgaagtcgggtaacttgcatcagtggaga
caaacatgcatagccctcaaatgaatgaccaataaaagcagc Run BLAST on NCBI protein sequence of TCONS_00054264-protein >TCONS_00054264-protein ID=TCONS_00054264-protein|Name=TCONS_00054264-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp
MAFQLEVEGKIAFTSEEIISGELSMKEVLDDTGLIIEIDYPDSIEGTRYQ
FLHYSFNEFLTALHLFDTGTVDARITNPYILSMLSGLVGGSLYDSQSSPI
VRKFTSIFTKSSTESRKELLVDHLLAKEPKNPQHFFIDGKAYYLSVFYEY
QNKIEYNEHLHIQITNGSLNNYEKQCLDYLEKQATKGMFRLKSVTLSSFK
CPLESDEAKRLHSLFMLHTKNVNVSFNNIIQVSQLAEVIKDHVIHLKPDF
KIQRLFFLTLPNTDMSKAAPILPFVHGLETNGYLSQLRQLCTAASVKLRE
GQPAPYRLTYHSPFSLTAEELIECGLNIFQEIILAYNPYIQHMGAYKHQH
ARDCIAFESWKKMRLMSVKIWCGLQTSTSAISEQLEQKIKRIGASCMRGY
LYEGEPTIFDHSDEIENISMRKPRETYIRMPPGVRSLKDYLRLGVESQSQ
DP Run BLAST on NCBI transcript from alignment at scaffold_242:1317976..1321759+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054264 ID=TCONS_00054264|Name=TCONS_00054264|organism=Clytia hemisphaerica|type=transcript|length=3784bp|location=Sequence derived from alignment at scaffold_242:1317976..1321759+ (Clytia hemisphaerica)
tttcatttgatgataagaccatagtataagaaagccgcggctggaatgat
aacatctgaatttctgttattctatctctgtcgtatttgatgactatttg
ttgatcaagNACTTATCCATAATTTCATCTGATACTTTTGCAGGGATCCA
TTCTCAAAGCGATATTGGGCGTGTCCAAACTCGAGACGAAAGTAAAGTTG
TCATTGGAtatgatgacatcatcactAATTCCAATGATTACGTAATAATT
TCAGGTGTTCCGGGAAGTGGAAAAACAACATTAGCGGAAACACTGCTGTA
CAGCTGGAGCTGTGAGGGATTATGGCATAATACAGCCCAGGTTGACTCAC
AagaaaaaggtgtaaagaaaaaagtccactttgattttgttttcgttCTG
TATTTTCGACAATTAGTGCGTTTTCGAAAGGACAACACAATAACAGCGGA
AAAACTGTTGGATTTCTTTTATCCAAACTACGGATTCAATGATGGTGCAT
TATTGAAAGAACTGAAAAAGTATGATCGTAAAGCTTTGATAGTATTGGAA
GGTTTTGATGAGTTTGCCAACAAAAGAGACTTCGTTGATCAACCAGAAGA
AGAATGGTCAAGCCTTTCGCGTAGCATACACGATTTGATGAATCCCGAAA
ATCCTACTTTTGATGGTATATTAACACGCGTGGTATCTAGTCGACCGGGA
AGTTGCTCTTTATTAATGGATACATTTTTCCCGCGCTCATCGAGACATAA
ACATTGGAGAAAAATAATCGAGGTAACTGGTTTCAATAAACAAAACATCG
ACCTCTACATTCAAAAACATGTGCGCGATGATCAAAAGGTGAAACAGgtt
caagagaaaattgatgaTTCCCAAATGCTTGGTAAAATGATTGCAATTCC
TTTCTATGCGTGGGGAATCTGTTATCTTTTGAACAGTACAGATAATACTG
AGGGAATCTCCGTTCACACTTATACTTCGCTCTTTTGCAATCTACTCCCA
TTGTTTTTGAGATCACACAGTGCTACTCGGAAAAACCNCGCTCTTTTGCA
ATCTACTCCCATTGTTTTTGAGATCACACAGTGCTACTCGAAAAAACCAA
TTTGGTTGTTCGACCAGAAACATCTTAGAAGATCCAAAAGTTCACCAGGA
ATTGCTGACACTTGCTAAAATGGCTTTTCAACTTGAAGTTGAAGGTTTGT
TATACACTTCCATACGTTTTAATGTCTTTTAAAAACACCGATATGTGTGA
CCTTAGCCTTTTAGTATAGTGCATTCTCGAATATTTATGGAACTTTTTAT
TGATCAGAAACGTCTATGACCGAGGATAAAATAGGCTACCTTATTGGGAA
AAAATGttgggggaaagtgacgaaaattttgagaagtTGACGAAATTTCC
CCCCGACGAACTTCGCCCAAAATTTTTACCCGGTTTTTTAACCCCCCAAC
CAagatttttctccaattttttatttcaacaggAAAAAAGGTTCTCTATC
GTAGTTTTCCATTGTAAACGTTTCCAGGGATGTTTCTTAATAGAACaaat
aaaatgactttttttcaaacgaGTTCTTTTGCCCAATAAACACAACAAAC
TATGTTAAAACTGCaatggtttgataaaaaattcttatGCTCTATATTTT
GTCggaaacattcaaaaaattttggtcagggaaaagtgacgaatttgaaa
ttttggtcgggggaaagtgacgaaaatgcctctaggtgacgaaaatattt
ccccgacgaaaaaaaaccctGACTATATAAAACTCCGACATATTTTTCCC
GATAAGGCACATCACATTTCCTTTGTTTAGAGCCTAAAGCAATTTCTTAT
CGAGATAAAAATTGAGATAGCCTAAGACCTGTCTATTAGAACAGGTTACT
GATGTTTAGAATAATTCCTCCTGCATAACTAGCGAATTTGTATGTTTCTT
GCAGCTCATTGTAGAtctaaattgtttttcttttaggtAAAATCGCTTTT
ACTTCGGAAGAGATCATTAGTGGAGAATTGTCAATGAAAGAAGTGTTGGA
TGATACTGGTTTAATTATCGAAATTGATTACCCGGATTCAATAGAGGGTA
CCCGGTACCAATTTCTTCATTATTCATTCAATGAGTTTCTGACTGCTTTA
CATTTATTTGATACCGGAACAGTAGATGCCCGGATCACAAATCCGTATAT
CTTATCAATGTTATCCGGATTGGTTGGAGGTTCTCTTTACGACTCACAAT
CTTCGCCAATCGTAAGAAAGTTCACATCCATTTTTACAAAGTCTTCAACA
GAATCTAGAAAGGAATTATTGGTTGATCACTTATTAGCAAAAGAGCCTAA
AAATCCTCAACATTTTTTCATTGACGGTAAAGCATATTATCTGAGTGTAT
TTTATgagtatcaaaacaaaatagaatATAACGAACACTTACATATTCAG
ATTACCAATGGTTCATTGAacaattatgaaaaacaatGTCTGGATTATTT
AGAGAAACAAGCTACCAAAGGAATGTTTCGTTTAAAATCTGTCACCTTAT
CTTCCTTCAAATGTCCGTTGGAAAGTGACGAAGCGAAACGGTTGCACTCG
CTCTTCATGCTACACACTAAAAATGTTAACGTTTCTTTTAATAATATTAT
TCAAGTCTCGCAACTTGCCGAGGTTATCAAGGATCATGTTATCCATTTAA
AACCCGATTTCAAAATCCAACGGTTATTTTTCCTAACATTGCCAAACACA
GATATGTCAAAGGCTGCTCCTATTCTACCCTTTGTTCATGGGTTGGAGAC
CAATGGGTATTTATCACAGCTTCGTCAATTGTGTACTGCAGCATCAGTCA
AGCTGAGAGAAGGTCAACCAGCTCCGTACAGGCTCACTTATCATTCTCCA
TTCAGCTTAACGGCTGAAGAGCTAATCGAATGTGGCTTGAATATATTCCA
GGAAATTATACTGGCTTATAATCCGTACATACAACATATGGGAGCTTATA
AACATCAACATGCAAGGGATTGTATTGCATTTGAATCGTGGAAAAAAATG
AGGTTAATGTCAGTCAAGATCTGGTGTGGCTTGCAAACTAGTACATCAGC
CATCAGCGAACAACTTGAGCAAAAGATAAAACGCATTGGTGCATCTTGTA
TGCGAGGATATCTTTATGAAGGTGAACCAACAATCTTCGACCATTCAGAT
GAAATCGAAAATATATCAATGAGGAAACCCCGTGAGACATATATTCGAAT
GCCACCAGGAGTTCGATCATTAAAGGATTATCTTCGCCTTGGTGTAGAGA
GCCAATCCCAAGATCCCTAATAACTTACAACTGGCCTCCGTGCGtcgtag
aattttttttcaggcaacTNATCCCTAATAACTTACAACTGGCCTCCGTG
CGTCGTAGAATCTTTTTTCAGGCAACTTGAAAATATATCTTCAACCATTA
AAATGAATAATCGACGAATGACAGCTACAGATAAGATTAAATCCAATCCA
AACGATCGATTAGATTAGAAGCAAATATTTAAGTTCACGATTAAACTATA
CCGtcatttctctaatttaatgCGGCCgattaaataaatatttttgaggt
GTCGCACTCATAATGGGAGaaaataaattactttgaaCCGTTGACTTTCC
TATCGCACTAAAGATTAGAGGAGAAATCTAGTTTATCCGCACTAACTTGA
AGGAaaagtaccgtgaagtcgggtaacttgcatcagtggagacaaacatg
catagccctcaaatgaatgaccaataaaagcagc Coding sequence (CDS) from alignment at scaffold_242:1317976..1321759+ >TCONS_00054264 ID=TCONS_00054264|Name=TCONS_00054264|organism=Clytia hemisphaerica|type=CDS|length=2718bp|location=Sequence derived from alignment at scaffold_242:1317976..1321759+ (Clytia hemisphaerica)
ATGGCTTTTCAACTTGAAGTTGAAGgtAAAATCGCTTTTACTTCGGAAGA
GATCATTAGTGGAGAATTGTCAATGAAAGAAGTGTTGGATGATACTGGTT
TAATTATCGAAATTGATTACCCGGATTCAATAGAGGGTACCCGGTACCAA
TTTCTTCATTATTCATTCAATGAGTTTCTGACTGCTTTACATTTATTTGA
TACCGGAACAGTAGATGCCCGGATCACAAATCCGTATATCTTATCAATGT
TATCCGGATTGGTTGGAGGTTCTCTTTACGACTCACAATCTTCGCCAATC
GTAAGAAAGTTCACATCCATTTTTACAAAGTCTTCAACAGAATCTAGAAA
GGAATTATTGGTTGATCACTTATTAGCAAAAGAGCCTAAAAATCCTCAAC
ATTTTTTCATTGACGGTAAAGCATATTATCTGAGTGTATTTTATgagtat
caaaacaaaatagaatATAACGAACACTTACATATTCAGATTACCAATGG
TTCATTGAacaattatgaaaaacaatGTCTGGATTATTTAGAGAAACAAG
CTACCAAAGGAATGTTTCGTTTAAAATCTGTCACCTTATCTTCCTTCAAA
TGTCCGTTGGAAAGTGACGAAGCGAAACGGTTGCACTCGCTCTTCATGCT
ACACACTAAAAATGTTAACGTTTCTTTTAATAATATTATTCAAGTCTCGC
AACTTGCCGAGGTTATCAAGGATCATGTTATCCATTTAAAACCCGATTTC
AAAATCCAACGGTTATTTTTCCTAACATTGCCAAACACAGATATGTCAAA
GGCTGCTCCTATTCTACCCTTTGTTCATGGGTTGGAGACCAATGGGTATT
TATCACAGCTTCGTCAATTGTGTACTGCAGCATCAGTCAAGCTGAGAGAA
GGTCAACCAGCTCCGTACAGGCTCACTTATCATTCTCCATTCAGCTTAAC
GGCTGAAGAGCTAATCGAATGTGGCTTGAATATATTCCAGGAAATTATAC
TGGCTTATAATCCGTACATACAACATATGGGAGCTTATAAACATCAACAT
GCAAGGGATTGTATTGCATTTGAATCGTGGAAAAAAATGAGGTTAATGTC
AGTCAAGATCTGGTGTGGCTTGCAAACTAGTACATCAGCCATCAGCGAAC
AACTTGAGCAAAAGATAAAACGCATTGGTGCATCTTGTATGCGAGGATAT
CTTTATGAAGGTGAACCAACAATCTTCGACCATTCAGATGAAATCGAAAA
TATATCAATGAGGAAACCCCGTGAGACATATATTCGAATGCCACCAGGAG
TTCGATCATTAAAGGATTATCTTCGCCTTGGTGTAGAGAGCCAATCCCAA
GATCCCTAAATGGCTTTTCAACTTGAAGTTGAAGgtAAAATCGCTTTTAC
TTCGGAAGAGATCATTAGTGGAGAATTGTCAATGAAAGAAGTGTTGGATG
ATACTGGTTTAATTATCGAAATTGATTACCCGGATTCAATAGAGGGTACC
CGGTACCAATTTCTTCATTATTCATTCAATGAGTTTCTGACTGCTTTACA
TTTATTTGATACCGGAACAGTAGATGCCCGGATCACAAATCCGTATATCT
TATCAATGTTATCCGGATTGGTTGGAGGTTCTCTTTACGACTCACAATCT
TCGCCAATCGTAAGAAAGTTCACATCCATTTTTACAAAGTCTTCAACAGA
ATCTAGAAAGGAATTATTGGTTGATCACTTATTAGCAAAAGAGCCTAAAA
ATCCTCAACATTTTTTCATTGACGGTAAAGCATATTATCTGAGTGTATTT
TATgagtatcaaaacaaaatagaatATAACGAACACTTACATATTCAGAT
TACCAATGGTTCATTGAacaattatgaaaaacaatGTCTGGATTATTTAG
AGAAACAAGCTACCAAAGGAATGTTTCGTTTAAAATCTGTCACCTTATCT
TCCTTCAAATGTCCGTTGGAAAGTGACGAAGCGAAACGGTTGCACTCGCT
CTTCATGCTACACACTAAAAATGTTAACGTTTCTTTTAATAATATTATTC
AAGTCTCGCAACTTGCCGAGGTTATCAAGGATCATGTTATCCATTTAAAA
CCCGATTTCAAAATCCAACGGTTATTTTTCCTAACATTGCCAAACACAGA
TATGTCAAAGGCTGCTCCTATTCTACCCTTTGTTCATGGGTTGGAGACCA
ATGGGTATTTATCACAGCTTCGTCAATTGTGTACTGCAGCATCAGTCAAG
CTGAGAGAAGGTCAACCAGCTCCGTACAGGCTCACTTATCATTCTCCATT
CAGCTTAACGGCTGAAGAGCTAATCGAATGTGGCTTGAATATATTCCAGG
AAATTATACTGGCTTATAATCCGTACATACAACATATGGGAGCTTATAAA
CATCAACATGCAAGGGATTGTATTGCATTTGAATCGTGGAAAAAAATGAG
GTTAATGTCAGTCAAGATCTGGTGTGGCTTGCAAACTAGTACATCAGCCA
TCAGCGAACAACTTGAGCAAAAGATAAAACGCATTGGTGCATCTTGTATG
CGAGGATATCTTTATGAAGGTGAACCAACAATCTTCGACCATTCAGATGA
AATCGAAAATATATCAATGAGGAAACCCCGTGAGACATATATTCGAATGC
CACCAGGAGTTCGATCATTAAAGGATTATCTTCGCCTTGGTGTAGAGAGC
CAATCCCAAGATCCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054264-exon-scaffold_242-1491911889:1317976..1319169 | TCONS_00054264-exon-scaffold_242-1491911889:1317976..1319169 | Clytia hemisphaerica | exon |
| TCONS_00054264-exon-scaffold_242-1510915933:1317976..1319169 | TCONS_00054264-exon-scaffold_242-1510915933:1317976..1319169 | Clytia hemisphaerica | exon |
| TCONS_00054264-exon-scaffold_242-1575043694:1317976..1319169 | TCONS_00054264-exon-scaffold_242-1575043694:1317976..1319169 | Clytia hemisphaerica | exon |
| TCONS_00054264-exon-scaffold_242-1491911889:1319962..1321759 | TCONS_00054264-exon-scaffold_242-1491911889:1319962..1321759 | Clytia hemisphaerica | exon |
| TCONS_00054264-exon-scaffold_242-1510915933:1319962..1321759 | TCONS_00054264-exon-scaffold_242-1510915933:1319962..1321759 | Clytia hemisphaerica | exon |
| TCONS_00054264-exon-scaffold_242-1575043694:1319962..1321759 | TCONS_00054264-exon-scaffold_242-1575043694:1319962..1321759 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1317976..1321759 + |
Blast
The following BLAST results are available for this feature:
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