TCONS_00054260 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054260
Unique NameTCONS_00054260
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1666

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054260 ID=TCONS_00054260|Name=TCONS_00054260|organism=Clytia hemisphaerica|type=transcript|length=1666bp
CAATAGAACATTCTTAACACCAATGTTATCCAAACACGGTAAACTATGGT
CCAACTTTTGGGGAGCTATTGGATCAGATGGTTTCTATGCTCGATCACCA
GACTATATCGATATTGTGAAGAACATTCGTCGTGGAGTGTGGAACGTACC
ACACGTTGCCAGTGCTTATTTGATCAAAGCATCAGCAATCAAACAAATGG
TTGTCAATCCGTTCTATTCGGAGAGACGAGACCAAGATATGATTTTTGGT
GAAAACAATAGAGATAGAGGTGTGTTTATGTATGTGACCAACATGGAACA
TTTTGGACATTTGAAAGAAACAGAGACGTACACAACAAACTACAAACACA
ACGACCTCCACCAATTGTTCAGTAATAGACTGGATTGGGAGGAACGTTAT
CTACATCCAAATTACACAAACTACTTGAAACCCAATTCTGACATGCCTAT
GCCTTGTCCAGATGTGTATTGGTTTCCACTTGTTACTGCAAACTACACCG
AAGATCTGATTGAGGAATGTGAACATTTTGGTGGATGGTCCGGTGGAAGA
CATgagGATAAACGTATTTCTGGAGGATATGAAAATGTTCCCACCGTTGA
TATCCACATGAACCAGATTGGTTTTGAGAAACAATGGCtacaaattttaa
aagattacGTCGCGCCAATGTGTACTCGAATTTATACAGGTTACAATCCA
CATtcGCATGCTATTATGAATTTTGTTGTCAAATACACACCGACTGGTCA
GAAATATTTGCGACCACATCACGATGCTTCCACTTTCACCATCAATATGG
CTTTGAATAGAAGAGGAATTGATTATGAGGGTGGAGGTGCTCGTTTCCTC
CGTTATAACTGCAGTGTCCGTGATACTCAAGTTGGATGGGCGTTGATCCA
CCCAGGGCGTTTGACACATCAACACGAAGGATTGGAAACTACAAAAGGAA
CACGTTACATCATGGTCTCTTTCATTGATCCATAAGAAGTAATTTGTTGT
CTTGTGAAATATTTCGATATGTTTTCTGAAGAATCGAGTTATTCGTCTTT
TATGCACATACACTTTCCAaactgaaataatttttctcaagAAATTCTTG
TTTGTCTGAAAAACGAATTCTTCTGCTCTTCAAACCTCAAAAAACTTTTC
CAATCTAAAATTTCTCTAAGACCGTAAGGAGCCCTTTTTCAGTTTATTTA
AAActacagaattttttttctttgaaaccaTATTTTTTTGTGCTCAAACG
AAGCCTTTTCATGATGATAATGGATCAGCCTATAGTCAGATGGTACAAAA
TGCCTTAAACTCCAAAGATTTatgaaaaccttaaaaaaatccaccatttt
gatgacgtcataggtAGAAAAGTTTGAATAACTTTACAATGAGTAAAGCT
GTCgacttcaaatttttaaaaattcgaaGATATGATTGTTTGTATAGGAA
AGGTTTATGCAGTAAAAAAACTGATAAAGGTTCCTTACAGCCGTAGAGTT
TGTTTTCATTTCCTAAACATTTATTAGAAACTGTTTCtataaatctttct
ttaatgcctaaataaattttatatttcttaatcttagaaaagtttttata
ccaaaagtttgtatttattttaaaactaaattttttttataaagagatTA
TTTGCCTAAACTGTTT
Run BLAST on NCBI

protein sequence of TCONS_00054260-protein

>TCONS_00054260-protein ID=TCONS_00054260-protein|Name=TCONS_00054260-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
NRTFLTPMLSKHGKLWSNFWGAIGSDGFYARSPDYIDIVKNIRRGVWNVP
HVASAYLIKASAIKQMVVNPFYSERRDQDMIFGENNRDRGVFMYVTNMEH
FGHLKETETYTTNYKHNDLHQLFSNRLDWEERYLHPNYTNYLKPNSDMPM
PCPDVYWFPLVTANYTEDLIEECEHFGGWSGGRHEDKRISGGYENVPTVD
IHMNQIGFEKQWLQILKDYVAPMCTRIYTGYNPHSHAIMNFVVKYTPTGQ
KYLRPHHDASTFTINMALNRRGIDYEGGGARFLRYNCSVRDTQVGWALIH
PGRLTHQHEGLETTKGTRYIMVSFIDP
Run BLAST on NCBI

transcript from alignment at scaffold_242:1305999..1311142+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054260 ID=TCONS_00054260|Name=TCONS_00054260|organism=Clytia hemisphaerica|type=transcript|length=5144bp|location=Sequence derived from alignment at scaffold_242:1305999..1311142+ (Clytia hemisphaerica)
CAATAGAACATTCTTAACACCAATGTTATCCAAACACGGTAAACTATGGT
CCAACTTTTGGGGAGCTATTGGATCAGATGGTTTCTATGCTCGATCACCA
GACTATATCGATATTGTGAAGAACATTCGTCGTGGAGTGTGGAACGTACC
ACACGTTGCCAGTGCTTATTTGATCAAAGCATCAGCAATCAAACAAATGG
TTGTCAATCCGTTCTATTCGGAGAGACGAGACCAAGATATGATTTTTGGT
GAAAACAATAGAGATAGAGTAAGATCTTTTGTTACTGGTGGTACCCTTCT
TAAGGCTTGCGGTACCCTTCTTAAGgcttttttcgcgttggtgcaatgca
acatactccatcccaccaacacaagataATTGCGTCTCccatgttttttt
gtttgtttcgtgagacaaaaagtgagggttttattggtagaaaggaAAAT
GGGGTTTCAGGCGTTTTAGGTCGGTGGGATGTTGCATTGCACGAATGAAA
GAATGAATCTCCCTCCCCTCACTTTTTAAAAACCAATATTACACCAAGCT
TCATTTTaagtacaagtttttttatatgaacatataaaacttttgaaacc
tttgatgttcttaactttttgagttttaagcctaaaagagTTCTTATTTT
CGCCTTTTTTGAGTATTTATGTGTATTTTCCTAAGGAATAGGGCCTTTTG
GGGtccacaaagtcttaaaatgtttttaagttgttcttaatattttggct
atcgaagccttatgttcttatatagtttgttcttattaaaaaaaacgtgt
atgcatgATTTCACATgacttttctttgattttttcttttaaaaagtaaa
atatggGCATCAATTTGATAAAATGAATCTCTCTCTCctcacttttcaaa
aatcacttgAGTATTACACCAAGCTTGATTTTCATTGGTAGGGTGTGTTT
ATGTATGTGACCAACATGGAACATTTTGGACATTTGAAAGAAACAGAGAC
GTACACAACAAACTACAAACACAACGACCTCCACCAATTGTTCAGTAATA
GACTGGTGAGTACAACCAAACTTTCATGTCAGATTGCATTTTGCGTGGAT
AGACTTTTCGTTCCAAAGTTTGGCTATATTTGTGAAATCCGTacttgtga
aatatttttgtctcTGGTAGGAATACGAAGGAAATTAGGTAAACAAAAAA
GCTGTCGAAAAATTCTTTCCACACTTTCCAAACTTTTGATAATAGATTCC
CAAATATTTTCCGATAAGTATATCTAGACGCGATGAAAATATACACCGCG
AAAATTTACGCACATAActgcaatataatttttttttttagttcttttta
GTCGTTCGGTAAGATAAACTCTTCTTTCGGTTTTCATAGGATTGGGAGGA
ACGTTATCTACATCCAAATTACACAAACTACTTGAAACCCAATTCTGACA
TGCCTATGGTAGGTTGCTTCTTTTTAATCTAATGAACAGTTTATCTTGAT
AGTGTCTTGTCTAAAGATAGCCAAAAGGCAAACGTCTAAAAACCCAACTT
GACAAAAagaaatgcttcctacggcactgaaaaCGCacaaaaattcggaa
ttccagagggtttTGACCCTTGAGTTTCTTGGAATTCCAGGGGTAGCTCA
Tacaaaggttggacctccttaacagggggtgtacggtttttttctggaaa
agcccattgatcttttactttttttcctatttttttcaGCCTTGTCCAGA
TGTGTATTGGTTTCCACTTGTTACTGCAAACTACACCGAAGATCTGATTG
AGGTAAATATTTATGCCGAAAAGGCTTGACTTCCTTCTCCCTAAAAGTCA
ATCGCGATTCTCGTAGAATTGTTTTATAATTATCATATACCTTCTCGGNC
CTCCCTAGAAGTCAATCGTGATTCTGGTAGAATTGTTTTATAATTATCAT
ATACCTTCTCgaccctttttacaccggcccttattattGGCGCTATTTTT
GGGctcttggcgtaataagggccggcgtaaaaaggtcTTTGAAACTTTTA
TTAACTACAAGTAACTAACTATATCAATGGTTACAATACTTGATTTTTGT
CTGCAGATTTATTTCAGATACATATACCTTCgatgtttgattttttggac
ctaccccggtggggtggaggtcctataaattaacctgtgttcgttcgttc
gtccgtccgtccgttcgttcgtctgttaccaacttttctcaggattgaat
cataggaatcttttgatttttggtacaaaggtgcaaaatgatggtggcca
aaatgttacggagcccgattttcgagaagaaaaaaattttggggaaattt
ggGCCAgcaaacggctaaaaaacggtttttttggacttttttttttattt
tttgcatttcttaaacagatttttgcaaaaaaaaattattggctcaaaaa
acgcatctttatctataagaatcactatttataagcataaatcaatgttc
ttagccaaattattattttattattattttttctaaacaaagaaaattga
aattgattagtttgataaccaagtaggtccataaaagtatcacttgttat
ttgATAGGAATGTGAACATTTTGGTGGATGGTCCGGTGGAAGACATgagg
taaataaaattattatcAGCTGCTAAGATTTGTGGAAACTAATGAATTCC
AACATCTGTAGTAGAAATCATGATTAGCCTTCTTTCTGAATGTTCCGACA
TCTATGAGATACATACTTAATGgttttaagatatttgatttttaaatcat
gttgcgttttttctttttggcccATCTGGTATAACTTctcattgaaaata
atttcttgtGAGCCAACCTTTTTGCAGAGTGTATTTTTGCCAATAGATTT
TCTCAATTTATTCTCAATGTATTCTTCCTTTTAGGATAAACGTATTTCTG
GAGGATATGAAAATGTTCCCACCGTTGATATCCACATGAACCAGGTATAA
GGTCTTATTTGATATTCTTTCTTTACATTTAGAGTAAAGAAATGTTATAT
TCCTTTCGAGAATCGAGAATCGTCTTTAGAcaatcaggatctagacaaat
aaAAAACTGACCGTCTtagctgaaaaatatataacataCTTAAATTCGCT
TATGTTTTAGCTCAATATTGTCCCCATGTAtccccaggctttatttacgc
aTGATTTGCGTTACtcatggacgccagagaatattaaaTTATCTGGCGCT
ATagaaaagctgataatacgcagggaacgaaaTTGCTTTCAAGTCCAGTA
TGTATAGCAGTCCAGTATACTACATGACAGATGACAGTAGTTAATACTGC
CTGAAAATGCGATCCAGGTTTTATTTCAGGGATTAaattttctcgttttt
ttttctccattcaGATTGGTTTTGAGAAACAATGGCtacaaattttaaaa
gattacGTCGCGCCAATGTGTACTCGAATTTATACAGGTTACAATCCACA
TGTGAGTCGAATTTCTTGTGTGATGATACTTGAAATTCCATTGATGGCTT
GATGTATTACTCTTTAGTCTATATATTCTACTGGGATACAAGCGACACTA
AGAGGGAATGAATTTCGAATATGCTGACGATATATCTATACGTCTTATTT
GTTACTCTTTagggagaaaattttttattttcatttgagAACCCTTTAAT
TAATACATTTTTTGGTCCTTTTGGTTGTGTCCTATTCAAAAGGGACCTTA
CGTGAAAGTCTGCTAGAAATGGACTTATCCCAAAATTTTACATTCAAGAA
TAAAATTAAATAGGGaatccatttttttttcttagtcGCATGCTATTATG
AATTTTGTTGTCAAATACACACCGACTGGTCAGAAATATTTGCGACCACA
TCACGATGCTTCCACTTTCACCATCAATATGGCTTTGAATAGAAGAGGAA
TTGATTATGAGGTGAGtcttcagtttttctttgactCTTCTTTCTACGTT
GTATGACCGGATATTGCCCGATAGATCAGTCGGTAGAGCTTTTACCATAT
AATTCAAGTTGTGGGTTTCTATCCCTGGTCGTcactaagctctagtttag
acggtgTTACGTCaattctaaccaatagaatggcttcacttcgtttcgga
gcgaaacggagcCGTCACGTGCGAATATgttctaaactagagctaactCA
TCAGATTTGATTGCATTAATGTTTAAACTACGTTAGGAGACAGCTTGAAA
CGCCTTTCTTGATTCACAATATCATACCTTCGCTAATCTTGATTCTTTCT
TTTGTAGGGTGGAGGTGCTCGTTTCCTCCGTTATAACTGCAGTGTCCGTG
ATACTCAAGTTGGATGGGCGTTGATCCACCCAGGGCGTTTGACACATCAA
CACGAAGGATTGGAAACTACAAAAGGAACACGTTACATCATGGTCTCTTT
CATTGATCCATAAGAAGTAATTTGTTGTCTTGTGAAATATTTCGATATGT
TTTCTGAAGAATCGAGTTATTCGTCTTTTATGCACATACACTTTCCAaac
tgaaataatttttctcaagAAATTCTTGTTTGTCTGAAAAACGAATTCTT
CTGCTCTTCAAACCTCAAAAAACTTTTCCAATCTAAAATTTCTCTAAGAC
CGTAAGGAGCCCTTTTTCAGTTTATTTAAAActacagaattttttttctt
tgaaaccaTATTTTTTTGTGCTCAAACGAAGCCTTTTCATGATGATAATG
GATCAGCCTATAGTCAGATGGTACAAAATGCCTTAAACTCCAAAGATTTa
tgaaaaccttaaaaaaatccaccattttgatgacgtcataggtAGAAAAG
TTTGAATAACTTTACAATGAGTAAAGCTGTCgacttcaaatttttaaaaa
ttcgaaGATATGATTGTTTGTATAGGAAAGGTTTATGCAGTAAAAAAACT
GATAAAGGTTCCTTACAGCCGTAGAGTTTGTTTTCATTTCCTAAACATTT
ATTAGAAACTGTTTCtataaatctttctttaatgcctaaataaattttat
atttcttaatcttagaaaagtttttataccaaaagtttgtatttatttta
aaactaaattttttttataaagagatTATTTGCCTAAACTGTTT

Coding sequence (CDS) from alignment at scaffold_242:1305999..1311142+

>TCONS_00054260 ID=TCONS_00054260|Name=TCONS_00054260|organism=Clytia hemisphaerica|type=CDS|length=8856bp|location=Sequence derived from alignment at scaffold_242:1305999..1311142+ (Clytia hemisphaerica)
AATAGAACATTCTTAACACCAATGTTATCCAAACACGGTAAACTATGGTC
CAACTTTTGGGGAGCTATTGGATCAGATGGTTTCTATGCTCGATCACCAG
ACTATATCGATATTGTGAAGAACATTCGTCGTGGAGTGTGGAACGTACCA
CACGTTGCCAGTGCTTATTTGATCAAAGCATCAGCAATCAAACAAATGGT
TGTCAATCCGTTCTATTCGGAGAGACGAGACCAAGATATGATTTTTGGTG
AAAACAATAGAGATAGAGGTGTGTTTATGTATGTGACCAACATGGAACAT
TTTGGACATTTGAAAGAAACAGAGACGTACACAACAAACTACAAACACAA
CGACCTCCACCAATTGTTCAGTAATAGACTGGATTGGGAGGAACGTTATC
TACATCCAAATTACACAAACTACTTGAAACCCAATTCTGACATGCCTATG
CCTTGTCCAGATGTGTATTGGTTTCCACTTGTTACTGCAAACTACACCGA
AGATCTGATTGAGGAATGTGAACATTTTGGTGGATGGTCCGGTGGAAGAC
ATgagGATAAACGTATTTCTGGAGGATATGAAAATGTTCCCACCGTTGAT
ATCCACATGAACCAGATTGGTTTTGAGAAACAATGGCtacaaattttaaa
agattacGTCGCGCCAATGTGTACTCGAATTTATACAGGTTACAATCCAC
ATtcGCATGCTATTATGAATTTTGTTGTCAAATACACACCGACTGGTCAG
AAATATTTGCGACCACATCACGATGCTTCCACTTTCACCATCAATATGGC
TTTGAATAGAAGAGGAATTGATTATGAGGGTGGAGGTGCTCGTTTCCTCC
GTTATAACTGCAGTGTCCGTGATACTCAAGTTGGATGGGCGTTGATCCAC
CCAGGGCGTTTGACACATCAACACGAAGGATTGGAAACTACAAAAGGAAC
ACGTTACATCATGGTCTCTTTCATTGATCCATAAAATAGAACATTCTTAA
CACCAATGTTATCCAAACACGGTAAACTATGGTCCAACTTTTGGGGAGCT
ATTGGATCAGATGGTTTCTATGCTCGATCACCAGACTATATCGATATTGT
GAAGAACATTCGTCGTGGAGTGTGGAACGTACCACACGTTGCCAGTGCTT
ATTTGATCAAAGCATCAGCAATCAAACAAATGGTTGTCAATCCGTTCTAT
TCGGAGAGACGAGACCAAGATATGATTTTTGGTGAAAACAATAGAGATAG
AGGTGTGTTTATGTATGTGACCAACATGGAACATTTTGGACATTTGAAAG
AAACAGAGACGTACACAACAAACTACAAACACAACGACCTCCACCAATTG
TTCAGTAATAGACTGGATTGGGAGGAACGTTATCTACATCCAAATTACAC
AAACTACTTGAAACCCAATTCTGACATGCCTATGCCTTGTCCAGATGTGT
ATTGGTTTCCACTTGTTACTGCAAACTACACCGAAGATCTGATTGAGGAA
TGTGAACATTTTGGTGGATGGTCCGGTGGAAGACATgagGATAAACGTAT
TTCTGGAGGATATGAAAATGTTCCCACCGTTGATATCCACATGAACCAGA
TTGGTTTTGAGAAACAATGGCtacaaattttaaaagattacGTCGCGCCA
ATGTGTACTCGAATTTATACAGGTTACAATCCACATtcGCATGCTATTAT
GAATTTTGTTGTCAAATACACACCGACTGGTCAGAAATATTTGCGACCAC
ATCACGATGCTTCCACTTTCACCATCAATATGGCTTTGAATAGAAGAGGA
ATTGATTATGAGGGTGGAGGTGCTCGTTTCCTCCGTTATAACTGCAGTGT
CCGTGATACTCAAGTTGGATGGGCGTTGATCCACCCAGGGCGTTTGACAC
ATCAACACGAAGGATTGGAAACTACAAAAGGAACACGTTACATCATGGTC
TCTTTCATTGATCCATAAAATAGAACATTCTTAACACCAATGTTATCCAA
ACACGGTAAACTATGGTCCAACTTTTGGGGAGCTATTGGATCAGATGGTT
TCTATGCTCGATCACCAGACTATATCGATATTGTGAAGAACATTCGTCGT
GGAGTGTGGAACGTACCACACGTTGCCAGTGCTTATTTGATCAAAGCATC
AGCAATCAAACAAATGGTTGTCAATCCGTTCTATTCGGAGAGACGAGACC
AAGATATGATTTTTGGTGAAAACAATAGAGATAGAGGTGTGTTTATGTAT
GTGACCAACATGGAACATTTTGGACATTTGAAAGAAACAGAGACGTACAC
AACAAACTACAAACACAACGACCTCCACCAATTGTTCAGTAATAGACTGG
ATTGGGAGGAACGTTATCTACATCCAAATTACACAAACTACTTGAAACCC
AATTCTGACATGCCTATGCCTTGTCCAGATGTGTATTGGTTTCCACTTGT
TACTGCAAACTACACCGAAGATCTGATTGAGGAATGTGAACATTTTGGTG
GATGGTCCGGTGGAAGACATgagGATAAACGTATTTCTGGAGGATATGAA
AATGTTCCCACCGTTGATATCCACATGAACCAGATTGGTTTTGAGAAACA
ATGGCtacaaattttaaaagattacGTCGCGCCAATGTGTACTCGAATTT
ATACAGGTTACAATCCACATtcGCATGCTATTATGAATTTTGTTGTCAAA
TACACACCGACTGGTCAGAAATATTTGCGACCACATCACGATGCTTCCAC
TTTCACCATCAATATGGCTTTGAATAGAAGAGGAATTGATTATGAGGGTG
GAGGTGCTCGTTTCCTCCGTTATAACTGCAGTGTCCGTGATACTCAAGTT
GGATGGGCGTTGATCCACCCAGGGCGTTTGACACATCAACACGAAGGATT
GGAAACTACAAAAGGAACACGTTACATCATGGTCTCTTTCATTGATCCAT
AAAATAGAACATTCTTAACACCAATGTTATCCAAACACGGTAAACTATGG
TCCAACTTTTGGGGAGCTATTGGATCAGATGGTTTCTATGCTCGATCACC
AGACTATATCGATATTGTGAAGAACATTCGTCGTGGAGTGTGGAACGTAC
CACACGTTGCCAGTGCTTATTTGATCAAAGCATCAGCAATCAAACAAATG
GTTGTCAATCCGTTCTATTCGGAGAGACGAGACCAAGATATGATTTTTGG
TGAAAACAATAGAGATAGAGGTGTGTTTATGTATGTGACCAACATGGAAC
ATTTTGGACATTTGAAAGAAACAGAGACGTACACAACAAACTACAAACAC
AACGACCTCCACCAATTGTTCAGTAATAGACTGGATTGGGAGGAACGTTA
TCTACATCCAAATTACACAAACTACTTGAAACCCAATTCTGACATGCCTA
TGCCTTGTCCAGATGTGTATTGGTTTCCACTTGTTACTGCAAACTACACC
GAAGATCTGATTGAGGAATGTGAACATTTTGGTGGATGGTCCGGTGGAAG
ACATgagGATAAACGTATTTCTGGAGGATATGAAAATGTTCCCACCGTTG
ATATCCACATGAACCAGATTGGTTTTGAGAAACAATGGCtacaaatttta
aaagattacGTCGCGCCAATGTGTACTCGAATTTATACAGGTTACAATCC
ACATtcGCATGCTATTATGAATTTTGTTGTCAAATACACACCGACTGGTC
AGAAATATTTGCGACCACATCACGATGCTTCCACTTTCACCATCAATATG
GCTTTGAATAGAAGAGGAATTGATTATGAGGGTGGAGGTGCTCGTTTCCT
CCGTTATAACTGCAGTGTCCGTGATACTCAAGTTGGATGGGCGTTGATCC
ACCCAGGGCGTTTGACACATCAACACGAAGGATTGGAAACTACAAAAGGA
ACACGTTACATCATGGTCTCTTTCATTGATCCATAAAATAGAACATTCTT
AACACCAATGTTATCCAAACACGGTAAACTATGGTCCAACTTTTGGGGAG
CTATTGGATCAGATGGTTTCTATGCTCGATCACCAGACTATATCGATATT
GTGAAGAACATTCGTCGTGGAGTGTGGAACGTACCACACGTTGCCAGTGC
TTATTTGATCAAAGCATCAGCAATCAAACAAATGGTTGTCAATCCGTTCT
ATTCGGAGAGACGAGACCAAGATATGATTTTTGGTGAAAACAATAGAGAT
AGAGGTGTGTTTATGTATGTGACCAACATGGAACATTTTGGACATTTGAA
AGAAACAGAGACGTACACAACAAACTACAAACACAACGACCTCCACCAAT
TGTTCAGTAATAGACTGGATTGGGAGGAACGTTATCTACATCCAAATTAC
ACAAACTACTTGAAACCCAATTCTGACATGCCTATGCCTTGTCCAGATGT
GTATTGGTTTCCACTTGTTACTGCAAACTACACCGAAGATCTGATTGAGG
AATGTGAACATTTTGGTGGATGGTCCGGTGGAAGACATgagGATAAACGT
ATTTCTGGAGGATATGAAAATGTTCCCACCGTTGATATCCACATGAACCA
GATTGGTTTTGAGAAACAATGGCtacaaattttaaaagattacGTCGCGC
CAATGTGTACTCGAATTTATACAGGTTACAATCCACATtcGCATGCTATT
ATGAATTTTGTTGTCAAATACACACCGACTGGTCAGAAATATTTGCGACC
ACATCACGATGCTTCCACTTTCACCATCAATATGGCTTTGAATAGAAGAG
GAATTGATTATGAGGGTGGAGGTGCTCGTTTCCTCCGTTATAACTGCAGT
GTCCGTGATACTCAAGTTGGATGGGCGTTGATCCACCCAGGGCGTTTGAC
ACATCAACACGAAGGATTGGAAACTACAAAAGGAACACGTTACATCATGG
TCTCTTTCATTGATCCATAAAATAGAACATTCTTAACACCAATGTTATCC
AAACACGGTAAACTATGGTCCAACTTTTGGGGAGCTATTGGATCAGATGG
TTTCTATGCTCGATCACCAGACTATATCGATATTGTGAAGAACATTCGTC
GTGGAGTGTGGAACGTACCACACGTTGCCAGTGCTTATTTGATCAAAGCA
TCAGCAATCAAACAAATGGTTGTCAATCCGTTCTATTCGGAGAGACGAGA
CCAAGATATGATTTTTGGTGAAAACAATAGAGATAGAGGTGTGTTTATGT
ATGTGACCAACATGGAACATTTTGGACATTTGAAAGAAACAGAGACGTAC
ACAACAAACTACAAACACAACGACCTCCACCAATTGTTCAGTAATAGACT
GGATTGGGAGGAACGTTATCTACATCCAAATTACACAAACTACTTGAAAC
CCAATTCTGACATGCCTATGCCTTGTCCAGATGTGTATTGGTTTCCACTT
GTTACTGCAAACTACACCGAAGATCTGATTGAGGAATGTGAACATTTTGG
TGGATGGTCCGGTGGAAGACATgagGATAAACGTATTTCTGGAGGATATG
AAAATGTTCCCACCGTTGATATCCACATGAACCAGATTGGTTTTGAGAAA
CAATGGCtacaaattttaaaagattacGTCGCGCCAATGTGTACTCGAAT
TTATACAGGTTACAATCCACATtcGCATGCTATTATGAATTTTGTTGTCA
AATACACACCGACTGGTCAGAAATATTTGCGACCACATCACGATGCTTCC
ACTTTCACCATCAATATGGCTTTGAATAGAAGAGGAATTGATTATGAGGG
TGGAGGTGCTCGTTTCCTCCGTTATAACTGCAGTGTCCGTGATACTCAAG
TTGGATGGGCGTTGATCCACCCAGGGCGTTTGACACATCAACACGAAGGA
TTGGAAACTACAAAAGGAACACGTTACATCATGGTCTCTTTCATTGATCC
ATAAAATAGAACATTCTTAACACCAATGTTATCCAAACACGGTAAACTAT
GGTCCAACTTTTGGGGAGCTATTGGATCAGATGGTTTCTATGCTCGATCA
CCAGACTATATCGATATTGTGAAGAACATTCGTCGTGGAGTGTGGAACGT
ACCACACGTTGCCAGTGCTTATTTGATCAAAGCATCAGCAATCAAACAAA
TGGTTGTCAATCCGTTCTATTCGGAGAGACGAGACCAAGATATGATTTTT
GGTGAAAACAATAGAGATAGAGGTGTGTTTATGTATGTGACCAACATGGA
ACATTTTGGACATTTGAAAGAAACAGAGACGTACACAACAAACTACAAAC
ACAACGACCTCCACCAATTGTTCAGTAATAGACTGGATTGGGAGGAACGT
TATCTACATCCAAATTACACAAACTACTTGAAACCCAATTCTGACATGCC
TATGCCTTGTCCAGATGTGTATTGGTTTCCACTTGTTACTGCAAACTACA
CCGAAGATCTGATTGAGGAATGTGAACATTTTGGTGGATGGTCCGGTGGA
AGACATgagGATAAACGTATTTCTGGAGGATATGAAAATGTTCCCACCGT
TGATATCCACATGAACCAGATTGGTTTTGAGAAACAATGGCtacaaattt
taaaagattacGTCGCGCCAATGTGTACTCGAATTTATACAGGTTACAAT
CCACATtcGCATGCTATTATGAATTTTGTTGTCAAATACACACCGACTGG
TCAGAAATATTTGCGACCACATCACGATGCTTCCACTTTCACCATCAATA
TGGCTTTGAATAGAAGAGGAATTGATTATGAGGGTGGAGGTGCTCGTTTC
CTCCGTTATAACTGCAGTGTCCGTGATACTCAAGTTGGATGGGCGTTGAT
CCACCCAGGGCGTTTGACACATCAACACGAAGGATTGGAAACTACAAAAG
GAACACGTTACATCATGGTCTCTTTCATTGATCCATAAAATAGAACATTC
TTAACACCAATGTTATCCAAACACGGTAAACTATGGTCCAACTTTTGGGG
AGCTATTGGATCAGATGGTTTCTATGCTCGATCACCAGACTATATCGATA
TTGTGAAGAACATTCGTCGTGGAGTGTGGAACGTACCACACGTTGCCAGT
GCTTATTTGATCAAAGCATCAGCAATCAAACAAATGGTTGTCAATCCGTT
CTATTCGGAGAGACGAGACCAAGATATGATTTTTGGTGAAAACAATAGAG
ATAGAGGTGTGTTTATGTATGTGACCAACATGGAACATTTTGGACATTTG
AAAGAAACAGAGACGTACACAACAAACTACAAACACAACGACCTCCACCA
ATTGTTCAGTAATAGACTGGATTGGGAGGAACGTTATCTACATCCAAATT
ACACAAACTACTTGAAACCCAATTCTGACATGCCTATGCCTTGTCCAGAT
GTGTATTGGTTTCCACTTGTTACTGCAAACTACACCGAAGATCTGATTGA
GGAATGTGAACATTTTGGTGGATGGTCCGGTGGAAGACATgagGATAAAC
GTATTTCTGGAGGATATGAAAATGTTCCCACCGTTGATATCCACATGAAC
CAGATTGGTTTTGAGAAACAATGGCtacaaattttaaaagattacGTCGC
GCCAATGTGTACTCGAATTTATACAGGTTACAATCCACATtcGCATGCTA
TTATGAATTTTGTTGTCAAATACACACCGACTGGTCAGAAATATTTGCGA
CCACATCACGATGCTTCCACTTTCACCATCAATATGGCTTTGAATAGAAG
AGGAATTGATTATGAGGGTGGAGGTGCTCGTTTCCTCCGTTATAACTGCA
GTGTCCGTGATACTCAAGTTGGATGGGCGTTGATCCACCCAGGGCGTTTG
ACACATCAACACGAAGGATTGGAAACTACAAAAGGAACACGTTACATCAT
GGTCTCTTTCATTGATCCATAAAATAGAACATTCTTAACACCAATGTTAT
CCAAACACGGTAAACTATGGTCCAACTTTTGGGGAGCTATTGGATCAGAT
GGTTTCTATGCTCGATCACCAGACTATATCGATATTGTGAAGAACATTCG
TCGTGGAGTGTGGAACGTACCACACGTTGCCAGTGCTTATTTGATCAAAG
CATCAGCAATCAAACAAATGGTTGTCAATCCGTTCTATTCGGAGAGACGA
GACCAAGATATGATTTTTGGTGAAAACAATAGAGATAGAGGTGTGTTTAT
GTATGTGACCAACATGGAACATTTTGGACATTTGAAAGAAACAGAGACGT
ACACAACAAACTACAAACACAACGACCTCCACCAATTGTTCAGTAATAGA
CTGGATTGGGAGGAACGTTATCTACATCCAAATTACACAAACTACTTGAA
ACCCAATTCTGACATGCCTATGCCTTGTCCAGATGTGTATTGGTTTCCAC
TTGTTACTGCAAACTACACCGAAGATCTGATTGAGGAATGTGAACATTTT
GGTGGATGGTCCGGTGGAAGACATgagGATAAACGTATTTCTGGAGGATA
TGAAAATGTTCCCACCGTTGATATCCACATGAACCAGATTGGTTTTGAGA
AACAATGGCtacaaattttaaaagattacGTCGCGCCAATGTGTACTCGA
ATTTATACAGGTTACAATCCACATtcGCATGCTATTATGAATTTTGTTGT
CAAATACACACCGACTGGTCAGAAATATTTGCGACCACATCACGATGCTT
CCACTTTCACCATCAATATGGCTTTGAATAGAAGAGGAATTGATTATGAG
GGTGGAGGTGCTCGTTTCCTCCGTTATAACTGCAGTGTCCGTGATACTCA
AGTTGGATGGGCGTTGATCCACCCAGGGCGTTTGACACATCAACACGAAG
GATTGGAAACTACAAAAGGAACACGTTACATCATGGTCTCTTTCATTGAT
CCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034227XLOC_034227Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054260-proteinTCONS_00054260-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054260-exon-scaffold_242-1491911889:1305999..1306266TCONS_00054260-exon-scaffold_242-1491911889:1305999..1306266Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1510915933:1305999..1306266TCONS_00054260-exon-scaffold_242-1510915933:1305999..1306266Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1575043694:1305999..1306266TCONS_00054260-exon-scaffold_242-1575043694:1305999..1306266Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1491911889:1306940..1307053TCONS_00054260-exon-scaffold_242-1491911889:1306940..1307053Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1510915933:1306940..1307053TCONS_00054260-exon-scaffold_242-1510915933:1306940..1307053Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1575043694:1306940..1307053TCONS_00054260-exon-scaffold_242-1575043694:1306940..1307053Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1491911889:1307388..1307456TCONS_00054260-exon-scaffold_242-1491911889:1307388..1307456Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1510915933:1307388..1307456TCONS_00054260-exon-scaffold_242-1510915933:1307388..1307456Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1575043694:1307388..1307456TCONS_00054260-exon-scaffold_242-1575043694:1307388..1307456Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1491911889:1307738..1307800TCONS_00054260-exon-scaffold_242-1491911889:1307738..1307800Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1510915933:1307738..1307800TCONS_00054260-exon-scaffold_242-1510915933:1307738..1307800Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1575043694:1307738..1307800TCONS_00054260-exon-scaffold_242-1575043694:1307738..1307800Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1491911889:1308606..1308647TCONS_00054260-exon-scaffold_242-1491911889:1308606..1308647Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1510915933:1308606..1308647TCONS_00054260-exon-scaffold_242-1510915933:1308606..1308647Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1575043694:1308606..1308647TCONS_00054260-exon-scaffold_242-1575043694:1308606..1308647Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1491911889:1308933..1308992TCONS_00054260-exon-scaffold_242-1491911889:1308933..1308992Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1510915933:1308933..1308992TCONS_00054260-exon-scaffold_242-1510915933:1308933..1308992Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1575043694:1308933..1308992TCONS_00054260-exon-scaffold_242-1575043694:1308933..1308992Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1491911889:1309413..1309499TCONS_00054260-exon-scaffold_242-1491911889:1309413..1309499Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1510915933:1309413..1309499TCONS_00054260-exon-scaffold_242-1510915933:1309413..1309499Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1575043694:1309413..1309499TCONS_00054260-exon-scaffold_242-1575043694:1309413..1309499Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1491911889:1309834..1309959TCONS_00054260-exon-scaffold_242-1491911889:1309834..1309959Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1510915933:1309834..1309959TCONS_00054260-exon-scaffold_242-1510915933:1309834..1309959Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1575043694:1309834..1309959TCONS_00054260-exon-scaffold_242-1575043694:1309834..1309959Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1491911889:1310306..1311142TCONS_00054260-exon-scaffold_242-1491911889:1310306..1311142Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1510915933:1310306..1311142TCONS_00054260-exon-scaffold_242-1510915933:1310306..1311142Clytia hemisphaericaexon
TCONS_00054260-exon-scaffold_242-1575043694:1310306..1311142TCONS_00054260-exon-scaffold_242-1575043694:1310306..1311142Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1305999..1311142 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.243499	0.261194	0.358412	0.107892	37.9597	33.8367	15.9972	17.3796	10.4237	15.6564	14.2344	5.54617	29.9271	28.9942	16.6611	16.5	51.9316	86.0345	36.2641	41.6586	31.3355	32.5209	16.3885	20.5598	29.5159	29.7487	2.83802	3.84837	75.0524	92.0793
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006620Pro_4_hyd_alph
IPR005123Oxoglu/Fe-dep_dioxygenase
IPR001006Procol_lys_dOase
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0031418L-ascorbic acid binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016491oxidoreductase activity
GO:0008475procollagen-lysine 5-dioxygenase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005783 endoplasmic reticulum
molecular_function GO:0005506 iron ion binding
molecular_function GO:0031418 L-ascorbic acid binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function GO:0008475 procollagen-lysine 5-dioxygenase activity
Blast
[Close]
BLAST of TCONS_00054260 vs. Swiss-Prot (Human)
Match: PLOD3 (Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Homo sapiens GN=PLOD3 PE=1 SV=1)

HSP 1 Score: 407.527 bits (1046), Expect = 1.306e-132
Identity = 180/329 (54.71%), Postives = 242/329 (73.56%), Query Frame = 2 
Query:    2 NRTFLTPMLSKHGKLWSNFWGAIGSDGFYARSPDYIDIVKNIRRGVWNVPHVASAYLIKASAIKQMVV--NPFYSERRDQDMIFGENNRDRGVFMYVTNMEHFGHLKETETYTTNYKHNDLHQLFSNRLDWEERYLHPNYTNYLKPNSDMPMPCPDVYWFPLVTANYTEDLIEECEHFGGWSGGRHEDKRISGGYENVPTVDIHMNQIGFEKQWLQILKDYVAPMCTRIYTGYNPHSHAIMNFVVKYTPTGQKYLRPHHDASTFTINMALNRRGIDYEGGGARFLRYNCSVRDTQVGWALIHPGRLTHQHEGLETTKGTRYIMVSFIDP 982
            NR  + PMLS+HGKLWSNFWGA+  D +YARS DY+++V+  R GVWNVP+++ AY+I+   ++  +   + F     D DM F ++ RD+G+F++++N   FG L  T  Y T + H DL Q+F N +DW+E+Y+H NY+  L+    +  PCPDVYWFPL++    ++L+ E EH+G WSGGRHED R++GGYENVPTVDIHM Q+G+E QWLQ+L+ YV PM   ++ GY+  + A+MNFVV+Y P  Q  LRPHHD+STFT+N+ALN +G+DYEGGG RFLRY+C +   + GWAL+HPGRLTH HEGL TT GTRYIMVSF+DP
Sbjct:  410 NRKVIAPMLSRHGKLWSNFWGALSPDEYYARSEDYVELVQRKRVGVWNVPYISQAYVIRGDTLRMELPQRDVFSGSDTDPDMAFCKSFRDKGIFLHLSNQHEFGRLLATSRYDTEHLHPDLWQIFDNPVDWKEQYIHENYSRALEGEGIVEQPCPDVYWFPLLSEQMCDELVAEMEHYGQWSGGRHEDSRLAGGYENVPTVDIHMKQVGYEDQWLQLLRTYVGPMTESLFPGYHTKARAVMNFVVRYRPDEQPSLRPHHDSSTFTLNVALNHKGLDYEGGGCRFLRYDCVISSPRKGWALLHPGRLTHYHEGLPTTWGTRYIMVSFVDP 738
The following BLAST results are available for this feature:
BLAST of TCONS_00054260 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PLOD31.306e-13254.71Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 ... [more]
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