TCONS_00054260-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054260-protein
Unique NameTCONS_00054260-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054260-protein ID=TCONS_00054260-protein|Name=TCONS_00054260-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
NRTFLTPMLSKHGKLWSNFWGAIGSDGFYARSPDYIDIVKNIRRGVWNVP
HVASAYLIKASAIKQMVVNPFYSERRDQDMIFGENNRDRGVFMYVTNMEH
FGHLKETETYTTNYKHNDLHQLFSNRLDWEERYLHPNYTNYLKPNSDMPM
PCPDVYWFPLVTANYTEDLIEECEHFGGWSGGRHEDKRISGGYENVPTVD
IHMNQIGFEKQWLQILKDYVAPMCTRIYTGYNPHSHAIMNFVVKYTPTGQ
KYLRPHHDASTFTINMALNRRGIDYEGGGARFLRYNCSVRDTQVGWALIH
PGRLTHQHEGLETTKGTRYIMVSFIDP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034227XLOC_034227Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054260TCONS_00054260Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006620Pro_4_hyd_alph
IPR005123Oxoglu/Fe-dep_dioxygenase
IPR001006Procol_lys_dOase
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0031418L-ascorbic acid binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016491oxidoreductase activity
GO:0008475procollagen-lysine 5-dioxygenase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005783 endoplasmic reticulum
molecular_function GO:0005506 iron ion binding
molecular_function GO:0031418 L-ascorbic acid binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function GO:0008475 procollagen-lysine 5-dioxygenase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006620Prolyl 4-hydroxylase, alpha subunitSMARTSM00702p4hccoord: 153..326
e-value: 9.4E-17
score: 71.7
IPR005123Oxoglutarate/iron-dependent dioxygenasePFAMPF031712OG-FeII_Oxycoord: 241..327
e-value: 1.2E-4
score: 22.4
IPR005123Oxoglutarate/iron-dependent dioxygenasePROSITEPS51471FE2OG_OXYcoord: 233..327
score: 11.426
NoneNo IPR availableGENE3D2.60.120.620coord: 157..326
e-value: 6.0E-14
score: 51.8
IPR001006Procollagen-lysine 5-dioxygenasePROSITEPS01325LYS_HYDROXYLASEcoord: 255..262

Blast
[Close]
BLAST of TCONS_00054260-protein vs. Swiss-Prot (Human)
Match: PLOD3 (Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Homo sapiens GN=PLOD3 PE=1 SV=1)

HSP 1 Score: 407.527 bits (1046), Expect = 9.182e-138
Identity = 180/329 (54.71%), Postives = 242/329 (73.56%), Query Frame = 0 
Query:    1 NRTFLTPMLSKHGKLWSNFWGAIGSDGFYARSPDYIDIVKNIRRGVWNVPHVASAYLIKASAIKQMVV--NPFYSERRDQDMIFGENNRDRGVFMYVTNMEHFGHLKETETYTTNYKHNDLHQLFSNRLDWEERYLHPNYTNYLKPNSDMPMPCPDVYWFPLVTANYTEDLIEECEHFGGWSGGRHEDKRISGGYENVPTVDIHMNQIGFEKQWLQILKDYVAPMCTRIYTGYNPHSHAIMNFVVKYTPTGQKYLRPHHDASTFTINMALNRRGIDYEGGGARFLRYNCSVRDTQVGWALIHPGRLTHQHEGLETTKGTRYIMVSFIDP 327
            NR  + PMLS+HGKLWSNFWGA+  D +YARS DY+++V+  R GVWNVP+++ AY+I+   ++  +   + F     D DM F ++ RD+G+F++++N   FG L  T  Y T + H DL Q+F N +DW+E+Y+H NY+  L+    +  PCPDVYWFPL++    ++L+ E EH+G WSGGRHED R++GGYENVPTVDIHM Q+G+E QWLQ+L+ YV PM   ++ GY+  + A+MNFVV+Y P  Q  LRPHHD+STFT+N+ALN +G+DYEGGG RFLRY+C +   + GWAL+HPGRLTH HEGL TT GTRYIMVSF+DP
Sbjct:  410 NRKVIAPMLSRHGKLWSNFWGALSPDEYYARSEDYVELVQRKRVGVWNVPYISQAYVIRGDTLRMELPQRDVFSGSDTDPDMAFCKSFRDKGIFLHLSNQHEFGRLLATSRYDTEHLHPDLWQIFDNPVDWKEQYIHENYSRALEGEGIVEQPCPDVYWFPLLSEQMCDELVAEMEHYGQWSGGRHEDSRLAGGYENVPTVDIHMKQVGYEDQWLQLLRTYVGPMTESLFPGYHTKARAVMNFVVRYRPDEQPSLRPHHDSSTFTLNVALNHKGLDYEGGGCRFLRYDCVISSPRKGWALLHPGRLTHYHEGLPTTWGTRYIMVSFVDP 738
The following BLAST results are available for this feature:
BLAST of TCONS_00054260-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PLOD39.182e-13854.71Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 ... [more]
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