TCONS_00054237 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054237
Unique NameTCONS_00054237
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054237 ID=TCONS_00054237|Name=TCONS_00054237|organism=Clytia hemisphaerica|type=transcript|length=2228bp
GAACTACTGACTTGGGTCCCAAGGCCCTGATTTCACGCGGAATGAAAGCT
GTagatatgttgaaatttcaattAAAGCATAGTTACCGTGTAAATGGAGC
CAAAGAAGATGGTGACAAGCGAGAAGAGAAATCTGTTTTGACCAACATTG
TTTCCATAACACTGGATCGAATGCTTGATGTGATCTTACAAGAAGAGGAA
CAAAGCATACAACTGAAACTTCCTGATCCTTCCGTTTACATCTATGCGGA
AGAGGATGCGGACGATAACATTATTTTCGAAGAACAATCTGAGGACGACA
CTGGAGCACCTGTTATTCGTGGAGGCACACTGTATAAATTGGTTGAACGT
CTGACATACCACAAATATGGAGATCCCACGTTCATTCGTGTGTTCTTGAC
AACATTCCGTTCTTTCACCACGCCCGCCGAACTCCTCGACCTACTCATCA
AGCGCTATGATATTCCTGAACCAGCCGTGGTGGAAGATAACCTGGGTTCA
GATCCCAATCAACAATCTTTGACGCGCGACGAAATGAAACGCTTCAAGAA
AGAATACATGCACCCCATACAAGTCAGAGTTCTGAACGTGTTACGGCGTT
GGGTGGATCACCACTTCTATGATTTCACTCGTGAAGATGTTCTGATTCGG
CAGCTCAATAAGTTCCTCAAACGAATCGAAAAAACGCGGGCCGCTAAAAA
ATGGGTAGAAAACATACAAAAATTAACGAATAAAAGGTTGGAGGCGTTAT
CGTTAGGACCAGAGACGTACACATTCAATGAACCACCACCGCCCATTGAG
TGGCATCTCACCAAAGACCCTGCTGAATTCACATTACTGAAGCTACATCC
TCTAGAAATTGGAAGACAAATTACTCTAATGCAATCTGAAATCTTTCGTT
CCATTCGTCCTTCCGAGCTTGTTGGTTCAGTGTGGCAAAAGAATGACAAA
GAAAAGCTTTCACCGAACGCTTTGAAAATGATGAGATTATCCAACTTGCT
GACGTATTGGTATGAAACGAATTTGTGTGAAGCACAAAACTTTGAAGAAC
GATTAGCCATCTACAATCGGATCATTGACTTATTAATGGTTTTCATCGAG
TTGAATAACTTCAATGGAATTTCTGAAATCATCGGTTTTCTCGATTCGTC
GCCTGTTCACCGAATGAAGATCATCAAGGAGGAGTTTCAAAAGAAGTCGC
CAGCTCGTCACCAAGCTATTGAATATGTCAAAGGATTCTTCGACCGGCAG
TAcatcaaatataatgaaaaattgCGGTCGATAAATCCACCTTGTATACC
ATTCTTAGGTGTGTACTTGAGGAATATTCTACTAAGCGAAGAAGGGAATC
CCGATTTTCTCACGAATACAGATAACCTAATCAATTTCAGTAAAAGACGC
ATGGTTGCCGAGGCGATTGGTgatattcaaaaatatcaaaatatgccATA
CAATTTAGCAGTGGACGAAGACATACGCAATTTCTTAGAGAATCTGGATC
CATTCCAGGGTCGAGAAACAAATGACATGAACAATTATCTTTTTGAACGC
TCGCTAGAAGTTGAACCAAGACACGCCAAGAAACTTCCTGCATTTCCTCG
AACAAGCGACATCCCATTAAAATCGCCAGGCATCAAAGCAGGTCAATCGA
AATATGGGACACATGGTAAAAAACAATCTCAATCTGTCACCAGTCAGATA
AGTGTAGAGGTTCCAGCCACGCCCCTACCTAgtgatttagaaaaatttga
tttaaaagaaaTCGAGGATGAAGCACCTgacgttttttttaaagatcaaC
CACAAGACGAAGAACCGCCTCCGTTACCACCACCACTTTTGTTACCTAGG
CAACAACCAGCTCCTGCCCCGAAAAATAACTCGCCTACTCCCGCCCCATT
GAAGAAGAGGACGTCTCGTAAACAAATCATAGCGCCGATCGAAGAGGAGG
ACCTTGAAGCTTTGAACAGAATCAACGAACTTCCATCTACACCTGCACCT
ACTCTACCGCCTAGACAAAGACTTTCAAACCCTAATGCTCCTGAAATTAT
TCGGGACCGAACGAGATCCGCACCGCCGATTCCACCCAGTATACCACCGA
GACGGCCGCCCTTAGGGCCTAGGACTTCAGAGGGTGCGCCTGTCAGTTCG
ATTAGCGCTCCTATTAGACCGCCCGATCTCCCGCCAAGGAAGCCAGCACA
GCGTTGAATATTGTCATTTAAGTGGAGN
Run BLAST on NCBI

transcript from alignment at scaffold_242:880360..892080+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054237 ID=TCONS_00054237|Name=TCONS_00054237|organism=Clytia hemisphaerica|type=transcript|length=11721bp|location=Sequence derived from alignment at scaffold_242:880360..892080+ (Clytia hemisphaerica)
GAACTACTGACTTGGGTCCCAAGGCCCTGATTTCACGCGGAATGAAAGCT
GTagatatgttgaaatttcaattAAAGCATAGTTACCGTGTAAATGGAGC
CAAAGAAGATGGTGACAAGCGAGAAGAGAAATCTGTTTTGACCAACATTG
TTTCCATGTAAGTTCATCACCAAATCTCTGACAATACANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNtgataagaatgctgtaagaatat
tttaggatgattttcccaaaaaagttaagaatatccatgatgaaatggat
ttacaccattcttataaaaaaaaaagcgtgtatagtttgttctcataaaa
acgtgtatctgaAGAAGTATAACAAAAATAGTCTCTCGAactgaaaatta
tttgaaaatcacGGCTGTTTCGAATTGTTATTGTCTTGACCGGATTTCTT
GTTTAGTTCGGCGATTCTGTTATCGTAAATTTTATCtacaaaaaaattgc
aaattatATACATAAACAAACATCTGGCATCGTTCTCACAAAAAACGTGA
TGTTGTTAGAAAAGTATGGACTTTCAAGCGAAACTGAATTTTTCagtgaa
tttcatttttattgcaaCTTTGTTGAAGATTTATCCATTCTTGCATATCT
TTTGCTGAACTGAATGAAGTTGAATTCATAAGAGTGGAACTTATGGGTAT
TAGTTTAGTGGTCACATTTATTTCAAGTGTATAATTTGGATGTTTTATTT
AAGATAAGCCAAATTGGGCTGTCGCGGGTCAACACGTAAAAATTATCTGA
AGTAAATGTGCTATAAGCCTGatatcttttgttgttttttgaggATTATG
TCTCTAAATCAGTGCTTAGTCCTATACAAgctttgtttaaaatttcgtgT
GATGAGTAAGccttaaatttttttaacgtgagcaaaatttttgtttcaaa
agcacgaaatcaaattacaaatttggcacaaaatgttcaaatttATTTGT
TTGAGCTGAGGTGTAGGTTGTGTGTAGGACTTTGATGAAATCGTACCGTA
GGCTTATGGGGATGTTAGTTTAATATGTGTTCGAACACCTAAAAACAATC
TTTGttgattaaaaacaaattcACTGTATCTATGGACACTCTTTGACGTa
atcaaaaaccaaaacaaaccaagtATTGCGATCTTTTTGATTGAAGTGTC
TTTTGAGCTTTTGGGGCTTCCTTTACCTGAATACCCTGCTATCGGCCCCT
TTTCATGTCGACCCCTTTTCATGTCGGCCCTTATTGGGGTTATCTGACCG
AAAGACGACAAATCGGTAGAaatttttgtcttaaaaagcctaaattttaa
agtttttcctcTAAAAGAGCATACTGCGTTTAGAATATTCTTTCCAGTAC
TCTTTGTTATCAATGGCTAAGATTAACTGGCGAATTTCTTATATTACTTT
GATTCAGGCAGATCTTTAAtccttttcttgaaaaatttatcctctACAAC
TTTTTAGTCTCTGATACCCTCAAACAAATATGACTTTGAGAGGtgattta
tttttatgttttaaaaacgtttttatTTCATTCCACCTTCAGAACACTGG
ATCGAATGCTTGATGTGATCTTACAAGAAGAGGAACAAAGCATACAACTG
AAACTTCCTGATCCTTCCGTTTACATGTATGTGTATTGTTTATgcttttt
ctattttaaccTCTGAAAACTCCAAAGCCAGTTTGACTTGAagcgttttt
tgaaaatcagaaacATGGCTGGCTGGTTGCGACTAAacgcattttctcga
gatttcatgattagttttttctgatttttttttcacaaagatgcgtatta
gcaatgtccAAAACATGGTTGAGTCCGATTTTTtacttccttttcttttt
ccattCCATATTTATCAATAGTTAGGTCCAATATGGATTgtgcttgttta
tttttccttggagtaaaaagtttttctattttccaGGGATTAAACGACTG
ATTTTAGTTcttccaccctcactttaacgcagaaaaagattttttccaag
CCCTTTATTCGAAAGTTGACTTTCGGTAACTCTTTCCGGTTTTTCATAGC
TATGCGGAAGAGGATGCGGACGATAACATTATTTTCGAAGAACAATCTGA
GGTATGAAACTtgcttttcaatgtttttttttacaagaacaacctATATA
agaaagcttcgatggccaatttggatattcttatagaacGTGTAAATAAA
GAAGGACTGGTTCAAGGTGATAAAATTTCGtgtaatttaaatttgaaaac
ttaGCTTCATGAGAAATATGAAAATGGCTCATctgcgaaatatttttaaa
aatttgtaataaaatgaaaatttgcaaGCGTTGATAGTGCTTTACTCAGT
ATATTCTGCAGTCAAAAAAGAGGGAAAAGCTGTAAAATTTTGACATCGAA
ACTTAAGTTAGTGGGGCACTTACTGCTGCCAATGATATTGATAATTTCTT
GAAACATTTTGTAATGTTTAGGACGACACTGGAGCACCTGTTATTCGTGG
AGGCACACTGTATAAATTGGTTGAACGTCTGACATACCACAAATATGGAG
GTAGGaggctttactttttcttttctttgaaagatattgtGTCTGGTTTC
TACGCACTTCAGTGTGTTTGTGTCTGGTTTCTACGCACTTCAGTGTGTTT
GTGTCTGGTTTCTACGCACTTCAATGTGTTTGTGTCTGGTTTCTACGCTG
CTTACAGTTTGTCTTCAAATTTCGTAGCTACTCTACGCTCCCTTTATTTg
ctgttgaaaattttgaaaatgttatcttttaaattcaataatcaCAAGTC
TGTTCTGGTACACAAGCGATACCTTGCTTACCCATAATAATCCAAAAGTT
TCCTCGACAATCAAAGACTTTTTCTGAGCACTGATTTGCTAATTTAGGTC
AATTACATCATAATTTTTAGTTTCAGCgaaacttttggattgttatgggT
AAGTACGGTACCTCTATTCTCATTTCACGTCTTTTTTAGATCCCACGTTC
ATTCGTGTGTTCTTGACAACATTCCGTTCTTTCACCACGCCCGCCGAACT
CCTCGACCTACTCATCAAGCGCTATGATATTCCTGAACCAGCCGTGGTGG
AAGATAACCTGGGTTCAGATCCCAATCAACAATCTTTGACGCGCGACGAA
ATGAAACGCTTCAAGAAAGAATACATGCACCCCATACAAGTCAGGTAAGG
ATCAACTTTTGTAATTTCAATTCTTGAAAATTCTCTTTAATCAAACCTTC
ACTCTCGACTCCATTCAATGACTTTACCCTTTGTATCTAAAATGGGCTAT
TGAAGTTGAATCAGAAAACCATTTTGTCCATCTCTCACTCTTCATTATCA
TAGCAAAACAAAAGTACCATTGAACCCCCCCCCATTTGTTAAATTTCCTT
TAAGGCATAATTTccgtacccagctggcacaaaacgttgtttcagcgttc
atataacgttaaatgaacgttgagaacattagataaacgttgaaaggGCG
CTGTGTGCCAGCTCGGTAGAGAATGACCATTTTGATAACTTGTCGCTATC
AACTGCTGTTTTTACGAtattcaaaattatttcttttccttTCATTAGAG
TTCTGAACGTGTTACGGCGTTGGGTGGATCACCACTTCTATGATTTCACT
CGTGAAGATGTTCTGATTCGGCAGCTCAATAAGTTCCTCAAACGAATCGA
AAAAACGCGGGCCGCTAAAAAATGGGTAGAAAACATACAAAAATTAACGA
ATAAAAGGGTAAGGTTTTTATATCAACTTTCAAATATACTTAATACCTGT
GTATCAATCAGTTGAGAATCCGTAATACATCTCTGTCATTTAAAGTCaac
tttctctctctctctctaattcgaacctatATTATTCTAttaatctttct
ataattcgaactgcAATATTGGTATCCTCAGTTagaaattagtataaaat
actctcttcAACTCGAATTATTCTTTAATTCGACGTAAATGCCTGCGGTC
TCTTTgaggatcgaattagagagagtcaaatGTAATTTAGTAATTCTTAG
AAATTTGCAAGCATTTTGTTCATATCCCGGTTTTCAAAGTATACCAAATC
TCAAAGAACTTGTGATCGAGTTTAATAAATAGAATATGCATTTAAagcaa
attttcttctttccaaatcagattttatttttggtaaatttcAATGGATT
TTTATTGCGCATGTGATATGATGATAAGCTGACGCCCTTAGAGACGCCCT
ATGAACGCCATAAGCGGCTTTATACAATTTTTTCGGCAAACGAAATCAAT
TACATTATAACCTATTTTCTCGCATTTCTTTACATTTGCAGTTGGAGGCG
TTATCGTTAGGACCAGAGACGTACACATTCAATGAACCACCACCGCCCAT
TGAGTGGCATCTCACCAAAGACCCTGCTGAATTCACATTACTGAAGGTac
aaagttaagaatattttaggcttaaaactcaaaaagtcaagaactTCTGA
AGGTTCAGATAGCAAGCATGTATACATGTCCAATGAAAAAGTTTGTTATC
ACCACGCATTGTGGTGTCAACAGCAACCAGCACCATCCACCATTATATAC
ATCCTTTTCTTAGAGATCCATGATCTTTGTCCTCAATTTTCTACGTACAC
ATTGAGTCTTTTTAGTTCAAACCTCTACAACTCTAATGTCTCCCTTACAC
AAACAGGTTTTCTCGTCCAATCATTTAACATTGTCTTATAAACCCTACTC
CGTAACTGGAAATTTCCTCAACAGTTCCCCGTACGGgctcgagttataga
gactcaacTGTATCAGTCGAACGTATCATGGAAAGAGCTTGGGACTGGAC
CGGGAAATTTTTGTTCGTGTACATACTGACGCGTTCTTTCTGCTTCATTA
CAGCTACATCCTCTAGAAATTGGAAGACAAATTACTCTAATGCAATCTGA
AATCTTTCGGTAAGTAAACTATACATCCTCGATTAatgaaatcttccaaa
aatttGGTCTTCATACCTGACGAAAACTGTGATACGTTCCAGCCACTGAG
CTTCTCTAAACCTTTCAATCCTAGCTAACCAGAATCTTTAATCGGAGAGT
TTAAGGCACCCTGATTGTTACCCTTCCTGACTTTATAATTAATCCACCCG
CAAAGATCGGGTACCacctttccaaaaattttgcttAATTAGGTTATAAC
ATAGTCCGGGCTTTTGAGGAGATCAGTGGCTTTAACTCTGTCTAACAGAA
GAAGATCTTCTTCTCCTcacacacgttttttttataagaacaaactatat
aagaacataaggcttcgatggccaaaatcttaagaaaaagttaagaacat
tttaagctttGGGGGCtcttaaacacccgatttcttaggaaaatgaacaa
aaatactcaaaaaatggtgaagataagaacatgttaagaacatttctaag
cttaaaactcaaaaagttaagaatatccgaagacttcaaaaattttagat
gttcttataaaaaaagaatttaatttttgaacCATTTAACATTGTTCTTT
CTTTCATTGTTCAATAGTTCCATTCGTCCTTCCGAGCTTGTTGGTTCAGT
GTGGCAAAAGAATGACAAAGAAAAGCTTTCACCGAACGCTTTGAAAATGA
TGAGATTATCCAACTTGCTGACGTATTGGTATGAAACGAATTTGTGTGAA
GCACAAAACTTTGAAGAACGATTAGCCATCTACAATCGGATCATTGACTT
ATTAATGGTAAGgttttttgttggaaatttaCTTTTTCAGGGAAACtatt
tttaaaccttttaaATTCCCGAGCTCTTAGAAATGGCACTTGACATTGAA
GTCTCTTTCTCTTAGTTTCCATTATATTTGCTCTTTTACTCCAGTCCTGT
CTGACGTTATTTTCAAGTCTGAGCCAGATCAACGGCTTAAGCTCAAAATT
GAGTCGTGGCGAATTGGgcctttccagaaaaaaactgtataccccctgtt
gaggaggtccaaccctTTGTTGCTGGGAATGCTATGACCCCCTGGAATTC
CTGGTAATTTTAGGTTCGAAagccctctggaattctgaattctAATAGGA
TTGAAAAAGCTAGTctcatggaattccagttatttttgacaaattttttt
atatccaccacatatcaaaccttagaacgaaaatggacctcctcatcagc
gggtatacggtttttttctggaaaagccatTAAAGTCTTTTATGAAAGGG
CCGATAATGAAAAAATCTTCGTTGTATTTCGACCTTGATGGACCAACCGC
TGAGGCAGGTTATCGACCGGTCACTTTTCGCTGTATCTTTTTCgtacttg
aaaaagaaataaaaggtattttgtattttcgtACAATTCTAGGTTTTCAT
CGAGTTGAATAACTTCAATGGAATTTCTGAAATCATCGGTTTTCTCGATT
CGTCGCCTGTTCACCGAATGAAGATCATCAAGGAGGTAGTTTTGGTTTTG
GAGACATTGATTACTGACCTTTTTATTCATCAAATCTGAAGACTGATGGC
CACTTTGTATGAAGTGAATGCTCTAGAAATCTATtgagccattccatttt
atatccatataGGGAGCAGGGGGGTCTAAATTAGTATTTTTACTTTTGTC
CAccgtcactttaaggtatgaaagaGAAATTCTCCAAGTGTTCTGTTTGC
AAAGcttaccattttccagggggtatccacacatttccaagaattttttt
cggcttgaaaaggttcgtcttcccacctgtatggaaatttaatggaatgg
cCAATtaacggacgaattttcacgaGAAAAAGTGTCAAACTGATTCCGTA
AACTAGCCTTCAGTGAGCGTTTATTTTTCTCTTCCTATGTTTTCTGTTCA
GAGCACATTTTAACTTTAACGAAATCTAATCTTCTCATAACATTTTAGGA
GTTTCAAAAGAAGTCGCCAGCTCGTCACCAAGCTATTGAATATGTCAAAG
GATTCTTCGACCGGCAGTAcatcaaatataatgaaaaattgCGGTCGATA
AATCCACCTTGTATACCATTCTTAGGTGAGGAACcttttattgataataa
taATCATAATACCTATTATTAACACGTTTACCACTGACCTTATATATACC
CTGGACACAGTTTCTCAATCGTTTCTTTggtcggagtttttttgaaaatg
gtaccctaatggtagcactactgacaagttaaaaaaatttcaatggaaaa
taatgaaaaattcatTGAATTACAAATTAACTCACATCGGAAATTGCTAC
CATTAGGGGTTTCACTTTTCTAAAAGCTCTGATCAAAGATGGGGGAAATA
ACTTGATTCAGGTTAAATAAAGGTCATTGTGCGTTTCCATAGATACTGTG
GTAAGGTGAAGTCACTTTTGCAAGCTTCCCTCCTGAGGCTGTTGCAAATA
TTCGAGTTCTGTCTTTTCAATTGAGCCAAATTTAAATAGACCTTGATAGT
AAACTTAGTACAACTCTGCTTTGGTCAGTGCTTTTAGCTTTTAAGTCGAA
AAAAGAACAAGGATTAataaaatgggcttttccagaaatttaCCGTACCC
CTCCCTCCTTTTGAGGGTATCCATTTTTCGAGTTCCAAAGCCTCCTAGAT
GCCTGGCTTAAAAATAAAGACCCAACTGGTTATCCTGGATGTCCACGCGG
GTAGATAGCTTGAGGAAACCCATGCATTTTGTCCTGtatcccctggatat
ccagacattttgtcctgtaccccctggatatccagacattttgtcctgta
ccccctggatatccagacattttgtcctgtaccccctggatatccagaca
ttttgtcctgtaccccctggatatccagacattttgtcctgtaccccctg
gatatccagacattttgtcctgtaccccctggatatccagacattttgtc
ctgtaccccctggatatccagacatTTAGTCCTTTACCACTGATTATTCT
AAAAGGTTTTCTAAAGTTCCGTCATTTTTCAATTCTAGGTGTGTACTTGA
GGAATATTCTACTAAGCGAAGAAGGGAATCCCGATTTTCTCACGAATACA
GATAACCTAATCAATTTCAGTAAAAGGTATGCTCAAGTCACAAGTCATGT
ATACCGAGCTTATCGTTCTACATATTATGCAATTTGAGCATTACTAAGCT
CGTTTGAGATGAATCGATACTTCGATTCAGCCGGATTGAGAGAGAATGAT
ATATGAGTGAAGGTAGATAGTCTAttaccatatttccctaacattCTAGT
GTTTGAGATTTGAACACAGTCCATTGtggtgcaagtctgtgatcgaaacc
tagtcacactaccaatcggcagaatATTAGTGAGACACAGTGATAGCCTT
ATACAGATGCTGAGTGAATGTATACCACAAGTCATGCTTAAATTAGTAGT
CTGTTTCGCAGACCTCTACATATACTTCTATATAGGTCTGTTTAATAGTG
TATTTCCTGGCTTACCCTACGGGGGCTTTTTATGGTGACCtcccaaaaaa
cttttttttttagattatcATGTTCTTTCTCACGCCTAATTTTTTTCGGT
ACAAATATAATTTCTCAACTCTTTTTCCTTACAGACGCATGGTTGCCGAG
GCGATTGGTgatattcaaaaatatcaaaatatgccATACAATTTAGCAGT
GGACGAAGACATACGCAATTTCTTAGAGAATCTGGATCCATTCCAGGGTC
GAGAAACAAATGACATGAACAATTATCTTTTTGAACGCTCGCTAGAAGTT
GAACCAAGACACGCCAAGAAACTTCCTGCATTTGTAAGTTTCGAATTTTG
TGAAAGCAAATTTTTACCCCTTGAAGTCATGCATGTTTTGCTAGGTGTCT
AGAAAATTTCCTCCAGATAAATTCCTACCTATGAaatcccccctggtgaa
ttcctaCCTATAAAACCCACCCTGGTGAAGATACATCTTTGCTTCATTCA
ATTAAATTCACACTTTTAAAGATGGAAAGAAGCCTTTGCAccacatcact
tgcctcgtattcaaacaattatcatggtgattatgtcccttgagacatta
aatgattttgttATAAATAGAAagcagttttaataaaatccgctgggagt
caatcaccttggcaataatttcaaaacgaggcaagtgacgtaatttatga
aaagatctattCCCATCCAGGAaatcccccctggtgaattcacACCCATA
TATCTTTGcttactacacgcttttttttttaataagaatggtgttttttc
ATTTCATCATGAATATTCTTAACTTTTTGGCGAAAATCatccaaaaatat
tcttacggtattcttaggttaagatcgaaattggcaatctacaggttaaa
atgcattaaaaatggcattcttaggttcggttgctaaattccatgatggt
gatattcttaccatattcttaattttttggccatttttatcatggacatt
cttataaagtgtattcttataaaaaaaaagcgtgtagtagtTCAATTAAA
TTCACACTTTTAAAGATGGAAAGAAGCCCTTGGATTTACGTCAAAACATT
ACATTTGCattgaatcaaaagttaaatTGTTTGCGATTTagggccggtct
ccacttgcgcgcgctgcgatcgcatcTTTTGGCTtcaaagattacgtcat
aaagaTTTAGCGCGCtctcgaaaaaaagtttttcaaccaTTACGTCAGgt
cgcgccaatggaattgcttcatttttcttttgaccaatagcattgctcga
aaaagtgcgatggAAGCACGTGCAAGTGGAGACTGGCCTTTAGGAAGGCA
GAAAGCTGACGATTCGTAAAGGGCTACATATGTATACTACACAACATATT
GTTAGGCAATATATTAAcgatatattgctgagtgccATAAATATGTTGAA
AAGATGTTCGCAATATATTGTCACATCTccatttgcaatattccaacaat
ataggagGATTGTATACAGAaataaaattccttttttataatagagtacc
agttgttttATTCGTACATAACGGTTCGCGAATCATATTGTCAAAtgttg
ttcgtcaatatattgtgtagtctaagtactTAGTCCTTAAAGCAGTCGAA
AGTTTGTTTTATaccaatatttctttttttctttacagCCTCGAACAAGC
GACATCCCATTAAAATCGCCAGGCATCAAAGCAGGTCAATCGAAATATGG
GACACATGGTAAAAAACAATCTCAATCTGTCACCAGTCAGATAAGTGTAG
AGGTTCCAGCCACGCCCCTACCTAgtgatttagaaaaatttgatttaaaa
gaaaTCGAGGATGAAGCACCTgacgttttttttaaagatcaaCCACAAGA
CGAAGAACCGCCTCCGTTACCACCACCACTTTTGTTACCTAGGCAACAAC
CAGCTCCTGCCCCGAAAAATAACTCGCCTACTCCCGCCCCATTGAAGAAG
AGGACGTCTCGTAAACAAATCATAGCGCCGATCGAAGAGGAGGACCTTGA
AGCTTTGAACAGAATCAACGAACTTCCATCTACACCTGCACCTACTCTAC
CGCCTAGACAAAGACTTTCAAACCCTAATGCTCCTGAAATTATTCGGGAC
CGAACGAGATCCGCACCGCCGATTCCACCCAGTATACCACCGAGACGGCC
GCCCTTAGGGCCTAGGACTTCAGAGGGTGCGCCTGTCAGTTCGATTAGCG
CTCCTATTAGACCGCCCGATCTCCCGCCAAGGAAGCCAGCACAGCGTTGA
ATATTGTCATTTAAGTGGAGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034212XLOC_034212Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054237-exon-scaffold_242-1491911889:880360..880516TCONS_00054237-exon-scaffold_242-1491911889:880360..880516Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1510915933:880360..880516TCONS_00054237-exon-scaffold_242-1510915933:880360..880516Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1575043694:880360..880516TCONS_00054237-exon-scaffold_242-1575043694:880360..880516Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1491911889:882802..882885TCONS_00054237-exon-scaffold_242-1491911889:882802..882885Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1510915933:882802..882885TCONS_00054237-exon-scaffold_242-1510915933:882802..882885Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1575043694:882802..882885TCONS_00054237-exon-scaffold_242-1575043694:882802..882885Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1491911889:883309..883360TCONS_00054237-exon-scaffold_242-1491911889:883309..883360Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1510915933:883309..883360TCONS_00054237-exon-scaffold_242-1510915933:883309..883360Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1575043694:883309..883360TCONS_00054237-exon-scaffold_242-1575043694:883309..883360Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1491911889:883731..883809TCONS_00054237-exon-scaffold_242-1491911889:883731..883809Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1510915933:883731..883809TCONS_00054237-exon-scaffold_242-1510915933:883731..883809Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1575043694:883731..883809TCONS_00054237-exon-scaffold_242-1575043694:883731..883809Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1491911889:884249..884453TCONS_00054237-exon-scaffold_242-1491911889:884249..884453Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1510915933:884249..884453TCONS_00054237-exon-scaffold_242-1510915933:884249..884453Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1575043694:884249..884453TCONS_00054237-exon-scaffold_242-1575043694:884249..884453Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1491911889:884858..885017TCONS_00054237-exon-scaffold_242-1491911889:884858..885017Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1510915933:884858..885017TCONS_00054237-exon-scaffold_242-1510915933:884858..885017Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1575043694:884858..885017TCONS_00054237-exon-scaffold_242-1575043694:884858..885017Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1491911889:885601..885705TCONS_00054237-exon-scaffold_242-1491911889:885601..885705Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1510915933:885601..885705TCONS_00054237-exon-scaffold_242-1510915933:885601..885705Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1575043694:885601..885705TCONS_00054237-exon-scaffold_242-1575043694:885601..885705Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1491911889:886163..886218TCONS_00054237-exon-scaffold_242-1491911889:886163..886218Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1510915933:886163..886218TCONS_00054237-exon-scaffold_242-1510915933:886163..886218Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1575043694:886163..886218TCONS_00054237-exon-scaffold_242-1575043694:886163..886218Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1491911889:886827..887016TCONS_00054237-exon-scaffold_242-1491911889:886827..887016Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1510915933:886827..887016TCONS_00054237-exon-scaffold_242-1510915933:886827..887016Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1575043694:886827..887016TCONS_00054237-exon-scaffold_242-1575043694:886827..887016Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1491911889:887652..887744TCONS_00054237-exon-scaffold_242-1491911889:887652..887744Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1510915933:887652..887744TCONS_00054237-exon-scaffold_242-1510915933:887652..887744Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1575043694:887652..887744TCONS_00054237-exon-scaffold_242-1575043694:887652..887744Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1491911889:888208..888334TCONS_00054237-exon-scaffold_242-1491911889:888208..888334Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1510915933:888208..888334TCONS_00054237-exon-scaffold_242-1510915933:888208..888334Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1575043694:888208..888334TCONS_00054237-exon-scaffold_242-1575043694:888208..888334Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1491911889:889298..889385TCONS_00054237-exon-scaffold_242-1491911889:889298..889385Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1510915933:889298..889385TCONS_00054237-exon-scaffold_242-1510915933:889298..889385Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1575043694:889298..889385TCONS_00054237-exon-scaffold_242-1575043694:889298..889385Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1491911889:889894..890092TCONS_00054237-exon-scaffold_242-1491911889:889894..890092Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1510915933:889894..890092TCONS_00054237-exon-scaffold_242-1510915933:889894..890092Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1575043694:889894..890092TCONS_00054237-exon-scaffold_242-1575043694:889894..890092Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1491911889:891448..892080TCONS_00054237-exon-scaffold_242-1491911889:891448..892080Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1510915933:891448..892080TCONS_00054237-exon-scaffold_242-1510915933:891448..892080Clytia hemisphaericaexon
TCONS_00054237-exon-scaffold_242-1575043694:891448..892080TCONS_00054237-exon-scaffold_242-1575043694:891448..892080Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:880360..892080 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.65	3.46545	2.62674	1.9355	6.21182	5.33787	5.07492	7.84565	5.12247	3.75357	3.00518	0.659544	6.4493	9.13747	3.91195	3.1014	22.2878	23.3878	7.41297	8.1462	9.04955	10.7063	6.56375	5.72874	12.7464	15.0816	5.27205	2.99954	6.49601	6.33319
Blast
[Close]
BLAST of TCONS_00054237 vs. Swiss-Prot (Human)
Match: SOS1 (Son of sevenless homolog 1 OS=Homo sapiens GN=SOS1 PE=1 SV=1)

HSP 1 Score: 508.064 bits (1307), Expect = 2.233e-162
Identity = 252/508 (49.61%), Postives = 350/508 (68.90%), Query Frame = 3 
Query:  159 TLDRMLDVILQEEEQSIQLKLPDPSVYIYAEEDADDNIIFEEQSEDDTGAPVIRGGTLYKLVERLTYHKYGDPTFIRVFLTTFRSFTTPAELLDLLIKRYDIPEPAVVE-DNLGSDPNQQSLTRDEMKRFKKEYMHPIQVRVLNVLRRWVDHHFYDFTREDVLIRQLNKFLKRIEKTRAAKKWVENIQKLTNKRLEALSLGP-ETYTFNEPPPPIEWHLTKDPAE---FTLLKLHPLEIGRQITLMQSEIFRSIRPSELVGSVWQKNDKEKLSPNALKMMRLSNLLTYWYETNLCEAQNFEERLAIYNRIIDLLMVFIELNNFNGISEIIGFLDSSPVHRMKIIKEEFQKKSPARHQAI-EYVKGFFDRQYIKYNEKLRSINPPCIPFLGVYLRNILLSEEGNPDFLT-NTDNLINFSKRRMVAEAIGDIQKYQNMPYNLAVDEDIRNFLENLDPFQGRETNDMNNYLFERSLEVEPRHAKKLPAFPRTSDIPLKSPGIKAGQSKYGT 1661
            TL+RMLDV + +EE+  Q++LP   VY +AE D+++NIIFEE  +   G P+I+ GT+ KL+ERLTYH Y DP F+R FLTT+RSF  P ELL L+I+R++IPEP   E D +  +   Q L+  E+KRF+KEY+ P+Q+RVLNV R WV+HHFYDF R+  L++++ +F+  + + +A KKWVE+I K+  ++  A   GP    TF   PP +EWH+++ P     F LL LHP+EI RQ+TL++S+++R+++PSELVGSVW K DKE  SPN LKM+R +  LT W+E  + E +N EER+A+ +RII++L VF ELNNFNG+ E++  ++SSPV+R+    E+     P+R + I E      +  Y KY  KLRSINPPC+PF G+YL NIL +EEGNP+ L  +   LINFSKRR VAE  G+IQ+YQN PY L V+ DI+ F ENL+P       +  +YLF +SLE+EPR+ K LP FP+    PLKSPG++    + GT
Sbjct:  549 TLERMLDVTMLQEEKEEQMRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSA-ELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTV-RGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISR-PGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQI----PSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKYSYPLKSPGVRPSNPRPGT 1049
The following BLAST results are available for this feature:
BLAST of TCONS_00054237 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SOS12.233e-16249.61Son of sevenless homolog 1 OS=Homo sapiens GN=SOS1... [more]
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