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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054225 ID=TCONS_00054225|Name=TCONS_00054225|organism=Clytia hemisphaerica|type=transcript|length=1468bp
GAATATTCACTTTCCCAACcacatttcaaaaatgatttttcaatcttttt
tttctagTTCTCTTAGATCATGAAAGCATCAAGGAGTATGAAAGATAGTA
CAGAGTTTAAGATATGGAAACAAAAAAGATCTGCGTTTCGTTGGATATCG
AGTATAACAATGATTCTTTATGGAGCTGAAGATATCACTACCATAACCAT
GATTTTCTTACTCATGGACCGACATGGATTATCACGTCCAGTTGCTGCGT
TCTATTACAGTGTTACCGAAATGTTCTTTTGTTTGGTACAAGCCAATGGT
AGTTTGCTACTTGGACGCTATGCAGataaaacgcaaaaaattcGCCTTGT
TTTGATGGCGAATTTGTTCATGTGTTGTTTGTGCAATTTGGTTTACACAC
TTCCGCTACCATTATGGATTGTGTTGGGTGCACGTGGGTTAATGGGGACT
ACTGAGTCGTTGAATTCGGCTGTACTAGGTGAAATCCGTCGTGTGTACGA
TCATGACAAGAAAGAACTTATGAATGTCATAACTTGGTTCTCCATAAACA
TACAGGTTGGACGTAATGTAGCTGGAGTCCTCATTCTAGTTTTGGCTCAT
ATGTCCTTCAAAATTGGTTCTTGGCACATCGATCATTTAGTTGCATGCAA
CGTTATTGTAACTGTTTTAGCTGCTCTTCTTATTGTTGTCTCCTACTTCA
AACTGACTGATGTTTCCTTGGAACTGGATCAAATAAAACTGCATTGTACC
AAGAATTTTGATAGTCagcaaaatgaaacaaaagcaGCGTCCCCAAAGGT
CCTTATGGAATGGACAGACCTTTTTAACAAAGATATCATTTCAATCATTC
TATCTTTTGGTCTAGTCAGATATATGGCTTTGGTTTTTACTAGCAATGTA
TCCGTTTTGGCAGCAAGCGCAAAATACGAGTGGAGCAGCAACAGCAGATT
TATTGTTTTTCTTCTCCCGAGTATACTGTTTCTTTTCCTCGCCTTAGCTT
TGAATTATTCGAGATTTCTTGAAGATCGAACCGTATCGTTTTTCATCTAC
GTAATTGCATTATGCTTGGCATGCATAGTTTTAACAGGATTTCTGCTAAC
CAAAACTGGTTTATTGGAGACATTCATGAAACAATTCATCTTTTTCGTCG
TGttgaaaatgatcaaaagttTTAGTATTTATTTTGGATTTGTGTGCTCC
AATTTTTTACTCTTCATTTTGGTTAAACCGGAAGATAGCAGTTTCATAGC
TGGAGCTCGAATATATTTTTCTGTTCTATTGAAAGGGACAGCATATTTGA
TATCCTACAAGGCTTCATTTTACCCAGAATATTTATATCCACCAGCAATT
ATTGTGTTGTTGGTACTGGCACAATTTCTGCTTTATCGAAGACACTTGTA
TCTTCCAAAAAGGAATGTGTAGATGGTTTACATCACCGATAACTATTACA
CAAAATAATTGGAATAGA Run BLAST on NCBI protein sequence of TCONS_00054225-protein >TCONS_00054225-protein ID=TCONS_00054225-protein|Name=TCONS_00054225-protein|organism=Clytia hemisphaerica|type=polypeptide|length=450bp
MKASRSMKDSTEFKIWKQKRSAFRWISSITMILYGAEDITTITMIFLLMD
RHGLSRPVAAFYYSVTEMFFCLVQANGSLLLGRYADKTQKIRLVLMANLF
MCCLCNLVYTLPLPLWIVLGARGLMGTTESLNSAVLGEIRRVYDHDKKEL
MNVITWFSINIQVGRNVAGVLILVLAHMSFKIGSWHIDHLVACNVIVTVL
AALLIVVSYFKLTDVSLELDQIKLHCTKNFDSQQNETKAASPKVLMEWTD
LFNKDIISIILSFGLVRYMALVFTSNVSVLAASAKYEWSSNSRFIVFLLP
SILFLFLALALNYSRFLEDRTVSFFIYVIALCLACIVLTGFLLTKTGLLE
TFMKQFIFFVVLKMIKSFSIYFGFVCSNFLLFILVKPEDSSFIAGARIYF
SVLLKGTAYLISYKASFYPEYLYPPAIIVLLVLAQFLLYRRHLYLPKRNV Run BLAST on NCBI transcript from alignment at scaffold_242:623315..626662+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054225 ID=TCONS_00054225|Name=TCONS_00054225|organism=Clytia hemisphaerica|type=transcript|length=3348bp|location=Sequence derived from alignment at scaffold_242:623315..626662+ (Clytia hemisphaerica)
GAATATTCACTTTCCCAACcacatttcaaaaatgatttttcaatcttttt
tttctagTTCTCTTAGATCATGAAAGCATCAAGGAGTATGAAAGATAGTA
CAGAGTTTAAGATATGGAAACAAAAAAGATCTGCGTTTCGTTGGATATCG
AGTATAACAATGATTCTTTATGGAGCTGAAGATATCACTACCATAACCAT
GATTTTCTTACTCATGGACCGACATGGATTATCACGTCCAGTTGCTGCGT
TCTATTACAGTGTTACCGAAATGTTCTTTTGTTTGGTACAAGCCAATGGT
AGTTTGCTACTTGGACGCTATGCAGataaaacgcaaaaaattcGCCTTGT
TTTGATGGCGAATTTGTTCATGTGTTGTTTGTGCAATTTGGTTTACACAC
TTCCGCTACCATTATGGATTGTGTTGGGTGCACGTGGGTTAATGGGGACT
ACTGAGTCGTTGAATTCGGCTGTACTAGGTAAGATTTATTTTGCTTGTTG
TATTGTTTTGTTAGCCCTGTGGTTCGACTAGATACGCAAGCATCATCCTT
TCTTGAGACACAGGAACGCGAGAGAAGcgcaaatacacgcttttttttat
aagaatggtgtaaatccatttcatcatggttattcttaacttttttagca
aaatcatcctaaaatattcttacagcattcttaggttaggatcctaattg
actaaaaaatggtctaaaaatggcattcttagcttgagtagcaaaattct
atgatggtgatattcttaacatattcttcattttttggccattttcatca
tgaatattcttatgaagtatttatttaaaaaaagcgtgtataaaaagttc
ttgtaaaagtaaaaaataaattactGTGGGACAATGgtttggaaaagaaa
aagtttgtattAAGCAAACATAATTAGTCCAACGCAAACGTAAGCTGCAA
CGAAATACAACGACagggtttactagtctaggttGGATTGACTTAGCTTC
AAACCCCTGCAAAACTGCAGGTATACTgtcattcttctaatttaatcCGT
CCTCTAATTAGTacgaattaattattttggcaaaatgaaataatttatct
AACTCTAATTATTAGTACGAGTCCATGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCAT
GATCACGAATTTctgattttcctctaatttagtacgataaaggtcaaatt
ttcctctaattatagtacgaatagtaaaaataaacgaatttttttccatt
aGTGGATGCCAGAAACCTAACCTAGAGAAACTTTGGTGGTCAATACCCGG
TGTAACGATGATATATTTTCCTTTactcaaaaaacttttattcGCACGcc
gaaaaatagaaaattagttcccactcAATCTAGCTTAAACCTTTTATtta
cgaaagcagccggcgagacgacgtttttttccgatgtgttctgagagtat
gtttcagctagaaattttgaccTGTTCTAatcagatcttcgaaaattaat
cagctagaaatgtcCAGAAACCCAGAAATGAttatgtgttctgacgagac
aggggtataatcaaggtcatctaacgtgttcttgttgcctacctagtaac
cctagaaattttcataacacatctttcgtggagaaaaacTAATATCTTAC
AAGTTTGTCTTGGCGAACTGTTTaacctagattttagaacataAGTTTAG
agagacaaatagtgcgataaaggtttcctagaaatcagaacacattattt
gtataaaaaattgaaaggtcataacatttggtctcctagaagataagaac
acatatttctaaaaaatcccttcgccggctgcttctgtatTTAAATATCC
TTGGTTTATgtaaaaaagaaatacaaaacTTAACAAGACTTAAAAAACTT
CAATATCTTTATTCTGTGTTTGCGAAATCGATCATTATGGAACATTCGtt
caaattcgaatgttttcttacAAGACTGGCAGTATTTAATTAATGTTAtc
cagaaatgaaaattttcacacaAACCCTGCCGCATCCTTGTTTGATGTGT
GTTTCCGAAATTTTGAGGGATGGTTATCTTCCCTGAGCTCAAACATTCAA
CTTGGGAGGGGGGCACATTGNAGACGGTGTGacggaaattgaagaaaaaa
ttggcggaattgcggaatcgggtaccccctgaaaccccccccgtGTTAGA
CTGTAATTTCTTAAATGCCTGGATTGTAGCTAAGCCTGAAGAATTTCTCT
CTTTTTAGGTGAAATCCGTCGTGTGTACGATCATGACAAGAAAGAACTTA
TGAATGTCATAACTTGGTTCTCCATAAACATACAGGTTGGACGTAATGTA
GCTGGAGTCCTCATTCTAGTTTTGGCTCATATGTCCTTCAAAATTGGTTC
TTGGCACATCGATCATTTAGTTGCATGCAACGTTATTGTAACTGTTTTAG
CTGCTCTTCTTATTGTTGTCTCCTACTTCAAACTGACTGATGTTTCCTTG
GAACTGGATCAAATAAAACTGCATTGTACCAAGAATTTTGATAGTCagca
aaatgaaacaaaagcaGCGTCCCCAAAGGTCCTTATGGAATGGACAGACC
TTTTTAACAAAGATATCATTTCAATCATTCTATCTTTTGGTCTAGTCAGA
TATATGGCTTTGGTTTTTACTAGCAATGTATCCGTTTTGGCAGCAAGCGC
AAAATACGAGTGGAGCAGCAACAGCAGATTTATTGTTTTTCTTCTCCCGA
GTATACTGTTTCTTTTCCTCGCCTTAGCTTTGAATTATTCGAGATTTCTT
GAAGATCGAACCGTATCGTTTTTCATCTACGTAATTGCATTATGCTTGGC
ATGCATAGTTTTAACAGGATTTCTGCTAACCAAAACTGGTTTATTGGAGA
CATTCATGAAACAATTCATCTTTTTCGTCGTGttgaaaatgatcaaaagt
tTTAGTATTTATTTTGGATTTGTGTGCTCCAATTTTTTACTCTTCATTTT
GGTTAAACCGGAAGATAGCAGTTTCATAGCTGGAGCTCGAATATATTTTT
CTGTTCTATTGAAAGGGACAGCATATTTGATATCCTACAAGGCTTCATTT
TACCCAGAATATTTATATCCACCAGCAATTATTGTGTTGTTGGTACTGGC
ACAATTTCTGCTTTATCGAAGACACTTGTATCTTCCAAAAAGGAATGTGT
AGATGGTTTACATCACCGATAACTATTACACAAAATAATTGGAATAGA Coding sequence (CDS) from alignment at scaffold_242:623315..626662+ >TCONS_00054225 ID=TCONS_00054225|Name=TCONS_00054225|organism=Clytia hemisphaerica|type=CDS|length=2706bp|location=Sequence derived from alignment at scaffold_242:623315..626662+ (Clytia hemisphaerica)
ATGAAAGCATCAAGGAGTATGAAAGATAGTACAGAGTTTAAGATATGGAA
ACAAAAAAGATCTGCGTTTCGTTGGATATCGAGTATAACAATGATTCTTT
ATGGAGCTGAAGATATCACTACCATAACCATGATTTTCTTACTCATGGAC
CGACATGGATTATCACGTCCAGTTGCTGCGTTCTATTACAGTGTTACCGA
AATGTTCTTTTGTTTGGTACAAGCCAATGGTAGTTTGCTACTTGGACGCT
ATGCAGataaaacgcaaaaaattcGCCTTGTTTTGATGGCGAATTTGTTC
ATGTGTTGTTTGTGCAATTTGGTTTACACACTTCCGCTACCATTATGGAT
TGTGTTGGGTGCACGTGGGTTAATGGGGACTACTGAGTCGTTGAATTCGG
CTGTACTAGGTGAAATCCGTCGTGTGTACGATCATGACAAGAAAGAACTT
ATGAATGTCATAACTTGGTTCTCCATAAACATACAGGTTGGACGTAATGT
AGCTGGAGTCCTCATTCTAGTTTTGGCTCATATGTCCTTCAAAATTGGTT
CTTGGCACATCGATCATTTAGTTGCATGCAACGTTATTGTAACTGTTTTA
GCTGCTCTTCTTATTGTTGTCTCCTACTTCAAACTGACTGATGTTTCCTT
GGAACTGGATCAAATAAAACTGCATTGTACCAAGAATTTTGATAGTCagc
aaaatgaaacaaaagcaGCGTCCCCAAAGGTCCTTATGGAATGGACAGAC
CTTTTTAACAAAGATATCATTTCAATCATTCTATCTTTTGGTCTAGTCAG
ATATATGGCTTTGGTTTTTACTAGCAATGTATCCGTTTTGGCAGCAAGCG
CAAAATACGAGTGGAGCAGCAACAGCAGATTTATTGTTTTTCTTCTCCCG
AGTATACTGTTTCTTTTCCTCGCCTTAGCTTTGAATTATTCGAGATTTCT
TGAAGATCGAACCGTATCGTTTTTCATCTACGTAATTGCATTATGCTTGG
CATGCATAGTTTTAACAGGATTTCTGCTAACCAAAACTGGTTTATTGGAG
ACATTCATGAAACAATTCATCTTTTTCGTCGTGttgaaaatgatcaaaag
ttTTAGTATTTATTTTGGATTTGTGTGCTCCAATTTTTTACTCTTCATTT
TGGTTAAACCGGAAGATAGCAGTTTCATAGCTGGAGCTCGAATATATTTT
TCTGTTCTATTGAAAGGGACAGCATATTTGATATCCTACAAGGCTTCATT
TTACCCAGAATATTTATATCCACCAGCAATTATTGTGTTGTTGGTACTGG
CACAATTTCTGCTTTATCGAAGACACTTGTATCTTCCAAAAAGGAATGTG
TAGATGAAAGCATCAAGGAGTATGAAAGATAGTACAGAGTTTAAGATATG
GAAACAAAAAAGATCTGCGTTTCGTTGGATATCGAGTATAACAATGATTC
TTTATGGAGCTGAAGATATCACTACCATAACCATGATTTTCTTACTCATG
GACCGACATGGATTATCACGTCCAGTTGCTGCGTTCTATTACAGTGTTAC
CGAAATGTTCTTTTGTTTGGTACAAGCCAATGGTAGTTTGCTACTTGGAC
GCTATGCAGataaaacgcaaaaaattcGCCTTGTTTTGATGGCGAATTTG
TTCATGTGTTGTTTGTGCAATTTGGTTTACACACTTCCGCTACCATTATG
GATTGTGTTGGGTGCACGTGGGTTAATGGGGACTACTGAGTCGTTGAATT
CGGCTGTACTAGGTGAAATCCGTCGTGTGTACGATCATGACAAGAAAGAA
CTTATGAATGTCATAACTTGGTTCTCCATAAACATACAGGTTGGACGTAA
TGTAGCTGGAGTCCTCATTCTAGTTTTGGCTCATATGTCCTTCAAAATTG
GTTCTTGGCACATCGATCATTTAGTTGCATGCAACGTTATTGTAACTGTT
TTAGCTGCTCTTCTTATTGTTGTCTCCTACTTCAAACTGACTGATGTTTC
CTTGGAACTGGATCAAATAAAACTGCATTGTACCAAGAATTTTGATAGTC
agcaaaatgaaacaaaagcaGCGTCCCCAAAGGTCCTTATGGAATGGACA
GACCTTTTTAACAAAGATATCATTTCAATCATTCTATCTTTTGGTCTAGT
CAGATATATGGCTTTGGTTTTTACTAGCAATGTATCCGTTTTGGCAGCAA
GCGCAAAATACGAGTGGAGCAGCAACAGCAGATTTATTGTTTTTCTTCTC
CCGAGTATACTGTTTCTTTTCCTCGCCTTAGCTTTGAATTATTCGAGATT
TCTTGAAGATCGAACCGTATCGTTTTTCATCTACGTAATTGCATTATGCT
TGGCATGCATAGTTTTAACAGGATTTCTGCTAACCAAAACTGGTTTATTG
GAGACATTCATGAAACAATTCATCTTTTTCGTCGTGttgaaaatgatcaa
aagttTTAGTATTTATTTTGGATTTGTGTGCTCCAATTTTTTACTCTTCA
TTTTGGTTAAACCGGAAGATAGCAGTTTCATAGCTGGAGCTCGAATATAT
TTTTCTGTTCTATTGAAAGGGACAGCATATTTGATATCCTACAAGGCTTC
ATTTTACCCAGAATATTTATATCCACCAGCAATTATTGTGTTGTTGGTAC
TGGCACAATTTCTGCTTTATCGAAGACACTTGTATCTTCCAAAAAGGAAT
GTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054225-exon-scaffold_242-1491911889:623315..623792 | TCONS_00054225-exon-scaffold_242-1491911889:623315..623792 | Clytia hemisphaerica | exon |
| TCONS_00054225-exon-scaffold_242-1510915933:623315..623792 | TCONS_00054225-exon-scaffold_242-1510915933:623315..623792 | Clytia hemisphaerica | exon |
| TCONS_00054225-exon-scaffold_242-1575043694:623315..623792 | TCONS_00054225-exon-scaffold_242-1575043694:623315..623792 | Clytia hemisphaerica | exon |
| TCONS_00054225-exon-scaffold_242-1491911889:625673..626662 | TCONS_00054225-exon-scaffold_242-1491911889:625673..626662 | Clytia hemisphaerica | exon |
| TCONS_00054225-exon-scaffold_242-1510915933:625673..626662 | TCONS_00054225-exon-scaffold_242-1510915933:625673..626662 | Clytia hemisphaerica | exon |
| TCONS_00054225-exon-scaffold_242-1575043694:625673..626662 | TCONS_00054225-exon-scaffold_242-1575043694:625673..626662 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:623315..626662 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020846 | MFS_dom |
Blast
The following BLAST results are available for this feature:
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