TCONS_00054219 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00054219
Unique Name	TCONS_00054219
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2076

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_242:551160..557740+
coding sequence from alignment at scaffold_242:551160..557740+

transcript sequence

>TCONS_00054219 ID=TCONS_00054219|Name=TCONS_00054219|organism=Clytia hemisphaerica|type=transcript|length=2076bp
agaaaaaaataaaataaaaaataaaaaataatactgTCAAACAATAATGG
CATTGAGATTGAAACGAGTCCCGGTAACAAATTATCGCCATTTATGTCGA
TGTCTGTCAACCAGCGGTAGTGTAAATTCAAACGTAGAGCACCATCGATT
TGCAGTGATTGGTGGTGGAGCTGGTGGTTTGAGCGTCGCATCTTATCTTG
CAAGAAAGTTTCCAAATCAAGTAGCTGTAATTGAACCAGCAGATTATCAT
TACTATCAACCAATGTGGACATTAGTTGGTGCAGGATTGAAAGATTTGGA
TGATTCGATGAAGTCAATGTCACTGGTCATGCCAAGAAATGTCAAATGGA
TTAAAGAAAAAGCGGTCAAATTCGACCCTAAAGAAAATCTCGTTCACACT
GATAATGATCGACAGATCAAATATGATTTTGCTGTAGTTGCTCTTGGCAT
TCAATTACAATTTGAAAAGCTTCCAGGTTTAACAGAGGCACTTGGTACCG
ATGGTGTAGGGTGCAATTATTCAGTCAACACAGTCAAGGATACATTCAAA
GGCTTACAAAAGTTCAATGGTGGTGAGGCTATCTTCACTTTGCCAGCTAC
ACCAGTGAAATGTCTTGGTGCTCCTCAAAAGATCATGTATCTTGCTGATG
AAATCTTTAGAAAGAATGGTTGTCGCGATCAGACCAATATTTCTTACAAA
ACACCAGCTGGAGTGTTATTCGGTGTTGAAAAATACAGAAATTCTTTACT
GAAAGTTTGTGCAGAAAGAGACATCAACGTTGACTTGTTCCGCCATCTCA
TACAAATCGACCCTTCAAGAAAAGAAGTCGNACGTTGACTTGTTCCGCCA
TCTCATAAAAATCGACCCTGCAAGAAAAGAAGTCGTTTTTGAACATACCA
ATGATGAAAGTACGCCTAAGAAGACGGAAACTTTAAAGtaTGACTTCATC
CATGTCACACCTCCTATGGGACCATACCCTGTTCTCAAGAACAGCTTATT
GGCTGACGATAATGGCTTTGTTAACGTGGACAAACACACTTGTCAACATG
TCCAATACTCGAATGTCTTCTCTCTTGGTGATTGCTCCAGTCTTCCCAAC
AGTAAAACAGCCGCCGCAGTGGCTGCACAATCGGAAGTTGTTCGTAAGAA
TTTGACGAGTCTAGTAAATGGGAAACCATTACAATCTAAGTATGACGGTT
ATGCATCGTGTCCACTCATCACAAGCTCAAAGTCGTGTATTTTAGCGGAA
TTCAATTATGATGGACAACCTCAAGAGACGTTCCCTCTTGATCAAGGAGT
GGAGCGAAGAAGCATGTATCATTTGAAAGCAAACTTCATGCCGGATTTAT
ATTGGAATTCATTGATTCGTGGAACTTGGCCTGGTCCTGGTCCTGTAAGA
AAGATTTTACACATGGGAAGGGTTTGAAGgttttttttacggaatttaaT
TTAATAGACACACAAAAAACGATATTCAatttagaaacatttttttataa
aacacaTCATTTTGTACCGTAATGGTTTTTGTCTAGACAAAATCGAACTC
TTCTGCAAGATAGTAGAACTTTTTTGGAGACAATAATATTATGAGCTACC
TAAAGTTCTCCTAAATATCTTGAACAGTATACTCTAGCTTATTAGAAATT
CTGTTATTCGAATCgttctataatttgaactaaTTCTCATTTTCCATAAA
GAAAGAactatactttctataattcgaatctctctgtattTCGAATAAAT
GAAATTCTTCATTCAAGCTCTAATTGCGAGAATCAACTATATATCATCTG
TATCtatgttctttttattgaaatttttcacattttcaatCACGAATCAg
aggaattaatttttttctgggtgcggcttttttttatattagaggttaca
attttgatataaaaagaCTTTCTTAAAAAGggttgtaaatatttttttca
ccgATTTATACTAACGATATtgattaataattaataattaatttaattgt
ttcttcGGTTGTTCTTGACAAATTTTTGTATCTAATTATTTTCGCTTATG
GAAAAAAATGACGATCTCAAATCAAA

Run BLAST on NCBI

protein sequence of TCONS_00054219-protein

>TCONS_00054219-protein ID=TCONS_00054219-protein|Name=TCONS_00054219-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MALRLKRVPVTNYRHLCRCLSTSGSVNSNVEHHRFAVIGGGAGGLSVASY
LARKFPNQVAVIEPADYHYYQPMWTLVGAGLKDLDDSMKSMSLVMPRNVK
WIKEKAVKFDPKENLVHTDNDRQIKYDFAVVALGIQLQFEKLPGLTEALG
TDGVGCNYSVNTVKDTFKGLQKFNGGEAIFTLPATPVKCLGAPQKIMYLA
DEIFRKNGCRDQTNISYKTPAGVLFGVEKYRNSLLKVCAERDINVDLFRH
LIQIDPSRKEVXR

Run BLAST on NCBI

transcript from alignment at scaffold_242:551160..557740+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00054219 ID=TCONS_00054219|Name=TCONS_00054219|organism=Clytia hemisphaerica|type=transcript|length=6581bp|location=Sequence derived from alignment at scaffold_242:551160..557740+ (Clytia hemisphaerica)
agaaaaaaataaaataaaaaataaaaaataatactgTCAAACAATAATGG
CATTGAGATTGAAACGAGTCCCGGTAACAAATTATCGCCATTTATGTCGA
TGTCTGTCAACCAGCGGTAGTGTAAATTCAAACGTAGAGCACCATCGATT
TGCAGTGATTGGTGGTGGAGCTGGTGGTTTGAGCGTCGCATCTTATCTTG
CAAGAAAGTTTCCAAATCAAGTAGCTGTAATTGAACCAGCAGATGTAAGT
GGTATGGATTTGCTTAAAGCTATTTTGATCGTCTGATGAAAAAGCACCAA
ACTATTTGATTTCTTGAGTATTATTTGATTTCTTGAGTATTAAGCTGAAC
CTGATATCAATCCTGTTTAATTTATTGTGCTTCAGTAAAATAATTCTACT
GTATCATTTGaagctactgaagttgagcctaTTGTGTTGCGCACGTTAAT
TataattataatataaaataattaATGTGTTTGGGTAAAAAATACAACAT
GACTATTCCTTTTAATACACACTCATTAGAGGTGAATTACTTTCTGCAAG
AAAAACTTTACCGAGTTGAAAGATTTGCCTACGAATCAACCTTCGTTTTA
CGTAGAATCTACCCaaggggtactaggtttgcgagatgacggcTATTTCC
GAGCCAAAGATCGAAAATATACCCTTTAGAGAGATGAAAAATTGGCGTTT
TCGGAACCCTTAGAGAAgcatttttgtcgattttcactGGATTTTTGTCT
AAATTTTGGACCCTTTCTTTTTGGActctttttaatgttttttgtacccc
tttgagagactttcgagggtgtaaaaagtgaccCTTATGGCTCGTATATA
CCCGACAGccatttttcctatttttcctatTTTATTGTATATACAACAAC
AAATGATGTAACCTTTCATTTTAATCTCTGGCAAATACTAAGTGCTCCTA
AAGATAAGGAACCAGTAATAAAGGGTTAAGTTTTCATTTATAGTCAAACT
ATATTTTATTGCATTTTAGTATCATTACTATCAACCAATGTGGACATTAG
TTGGTGCAGGATTGAAAGATTTGGATGATTCGATGAAGTCAATGTCACTG
GTCATGCCAAGAAATGTCAAATGGATTAAAGAAAAAGCGGTCAAATTCGA
CCCTAAAGAAAATCTCGTTCACACTGATAATGATCGACAGgtttagtttt
attttttttattttcaacggAGCAAATTTTCTTAAAGCCTGAGATCTTTC
TAAGCACTTTGAGTTGGGgctcttttttaataaatttagaTCGAGTTTCT
TATCTGCTCAGCANGATCTTTCTAAAAGCACTTTGAGTTGGGgctctttt
ttataaatttagatCGAGTTTCTAATCTGCTCAGCGAAGCTGTGTGTCAA
TGTAGCTGGGTGAATTGCAGAAAAATCATACAATGTCCCGTCCGCAACAA
AAGTTCCATTCATGCTTACAAGTCAAGATCTGGGATCTAGAGGACCCCCA
TTTTTGCTTTGTTGTGACATACTAtggtaaaaactaattaatagGGTCCA
AAAATTTTTCCCTTCCGCAACGGTGCAAATGTcttaatttctcatttttt
gagaGAACTTTAATGTTCTAACTGTATCAGGCCAATAAACTATAGGGAAC
TACATGCTTTTTGCAGCAGtatcatttttcttgactttacATGTACTAGC
TATGGGTGAAAACCTTTTTGTCCTGTCCGCAACAAAGTGTCCCGTCCGCA
acatttttctcaagattggggctgtaacaaaaaaattatattacaCTCCA
AAAGGAAGGCTATTTAGTAaagttcacaaaaatgtaaagtTCTTAGAAAT
TGCATTTGCCAAAGTTGATTTATGGGTCCTCAAAAAGTGCCTGTTGCGGA
CGGGACATTGTATGATTTTACTGCAATTCGCCCAGCTAGGGGTCTAGGGG
TgctttcagcccccccccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNAGTGAGCTCAGGGCAAACGCCTGGTGGTGATTTAGAGGGCAAAGCTC
CCATAGAATTCGATAATGTATATTAATCTAGTTACTGTTgcttgaaaaca
tgaaaaaaaaaagttgaatttttctaaatctacTATCAATCCTAATTTTG
TTTATTGCCATTTGATTTCAGATCAAATATGATTTTGCTGTAGTTGCTCT
TGGCATTCAATTACAATTTGAAAAGGTATtagattatttttaaataatac
tCGAATAATGATACATCAAATCTGTTAAGaaataaatagaaaagaaaaac
tttaatgGTGCAGGCTACCTTAAATGTCCCATTATTCACCAGGGCTTACA
CATAACTTCCAAAATTATCTTTCTGGAGTTTTTCTGGCGTATGCATAACA
CTACCAGGTCAAATCTGAAAAGTAAGCTTCAAAGCTTGCCCTATTGGAGA
ATTATTTAGCCATGTTTAACGAAAAGTTTTGATTGATCGTTTCCACCAAC
AGCTTCCAGGTTTAACAGAGGCACTTGGTACCGATGGTGTAGGGTGCAAT
TATTCAGTCAACACAGTCAAGGATACATTCAAAGGCTTACAAAAGTTCAA
TGGTGGTGAGGCTATCTTCACTTTGCCAGCTACACCAGTGAAATGTCTTG
GTGCTCCTCAAAAGATCATGTATCTTGCTGATGAAATCTTTAGAAAGGTA
TCCAAACTGGGAACTTTACTTGTCATTATTTGGTATTAAAATAGCAATGA
CTTTAAAATTAAGGGTTAAAAAGTCTTTTTAACCCTTACTGTAGGGGAAA
TTATGAGGCCTTGCACTGGCCAAGAGTATTATGAATTGTAAGAGTTACCA
ACATTGCtcataaaattgtaaaaagttgCTACTCGAGCTATTTTTTCTGT
ACAAAATTTATTATAAGCGATTCTtattttcgggtcagggcttGGGTTAC
TTAGCACTCTAGCTCGTTTTCTGAAtaaatttgctttgaccacccctgat
atttTACCCTATTTTTGCTTATTGGGCCATGGGCTTTCATTCTCCATGGT
TAGATAGAGTCCTTGAGTCCTAGCAACCTTGTTAGTTATACTTAATGAAT
CTCTCAATGTATGCATCATCATAGAATGGTTGTCGCGATCAGACCAATAT
TTCTTACAAAACACCAGCTGGAGTGTTATTCGGTGTTGAAAAATACAGAA
ATTCTTTACTGAAAGTTTGTGCAGAAAGAGACATCAACGTTGACTTGTTC
CGCCATCTCATACAAATCGACCCTTCAAGAAAAGAAGTCGNACGTTGACT
TGTTCCGCCATCTCATAAAAATCGACCCTGCAAGAAAAGAAGTCGTTTTT
GAACATACCAATGATGAAAGTACGCCTAAGAAGACGGAAACTTTAAAGgt
ttgatttttgattgataGTCTAATAAAGAAGAACTAACTATTcagcttct
tttttttaaaggaaatagatttcgatttttaGATCGTGTAGATTGAGTCT
GAGGACCCTTGATAtaacttctttttcttttttttgcttaacTTTATTTG
TTAATCAAagtataaaaatttgaaatctttaaaaacgGTCTGTTACACTG
CTCTAATGCTCTACAACCATTTCGGTCTCATCTTAGCAGAACAGCAACAT
AATTTTCTGGGATTGGTTTGAGTTTGAATGATTTTCTGACCTATTTGAAG
ATCGTTTNTCTGTAACGATTTCGGTCTCATCTTAGCAGAACAGCAACATA
ATTTTCTGGGATTGGTTTAACTGTTACACACGACTAATAtctcaaaatat
atatttttcagtaTGACTTCATCCATGTCACACCTCCTATGGGACCATAC
CCTGTTCTCAAGAACAGCTTATTGGCTGACGATAATGGCTTTGTTAACGT
GGACAAACACACTTGTCAACATGTCCAATACTCGAATGTCTTCTCTCTTG
GTGATTGCTCCAGTCTTCCCAACAGTAAAACAGCCGCCGCAGTGGCTGCA
CAATCGGAAGTTGTTCGTAAGAATTTGACGAGTCTAGTAAATGGGAAACC
ATTACAATCTAAGGTAATTTTATGCTCCATTTTGGAACAAGGAATTTATT
TTTGCCTTCTCGTCCTCATCAAATATCATTTAAAGGGTGGTTAATTTTGA
GTTTCTTTCGTCTATCTACACAGTAGATGAAATGCATGAAATCATCATGA
CCTCGTTTTTCAAGTATTGTTGCTAAAGACACTACCCCGTCATTAGACAG
AACCAGTGGTCGTGAACAttttttatcggcgatccaaaaaatatctgcaa
tctgattggttaaaaagagtacaatatatcttgtatttcacatgtacaaa
atataaattgacgaaaagatgttgttgcattgtagcggtagtaGCAATCt
gacgtcactttgctacaaaagtgccctgcgtttttttccaacacaaaaag
cgtatttttttgggtcaccgataaaccagttatcagacatttgctcgtac
aatatggaaatgttttactcgttccggatttttcgtatattttcctcgcc
taaaggctccgaaaatattgtacggaaaaatctcggaactcgtaaaatat
ttatCATATTGTACTCGTAACtttccgataactattacgtatCAAAATTG
ATAAACGTCGTTTGGGAATATCGTTCgacgtattttttttttgaaggtaA
GGCCTGCAATGATTTTGTTATATCTTGAGAAGAGCGTATTGCGCCAAAGC
CATTATGCCATTATGCCAAAGCCATTTATGCAAGTAATGCATGGTAGAAG
AGAATACCATatcgtttatttatttttaaacataATGATGCTCGAAAAGA
ACGCCTGAAAGTATAGTTACTGTAGAATTTCGctattcgaacttctatca
tTCAAATCTTTTCTTTAGTTTGAATTTATCCCGATTCCCAAGGAAAAAAC
TTCTAAtatactttctgtaattcgaataaaataaaactaccgttcgagtt
cgaattagcgagagtccacTCTAAACGGATTCTTATTATTTTGTTCAGTA
TGACGGTTATGCATCGTGTCCACTCATCACAAGCTCAAAGTCGTGTATTT
TAGCGGAATTCAATTATGATGGACAACCTCAAGAGACGTTCCCTCTTGAT
CAAGGAGTGGTAAGTCTCTTTCACCATAAATATTTGACGAGTAAAAGGTT
CTTCGGCTCCGATAATGACTCTTCGTTCAATGGGCTATTCAATTTTATAT
CTATACAAGTGGGAAGGAATAACCTTTCTTGGGGGTAATCCGAAGAAGAA
TTTCCAAGGGGTCTtaggaaagatttttttctttcaagggGTAAAAAGTA
TTCTAAAACTTCCAAAGAGTAAAAGACTGGTTTAAGTTCTTCCActctca
ctttaaggtatgaagaataatttttccaagggtttaCTTTAAAGCGAGTC
TTTCTTCGCTTTAAAACCCCACATGCACAAGAAGCTGCTTTTATCACTAA
CTTTTAACACTAATATTTTTGCATCaattttctttactttcctTTCTCGT
TTTCAGGAGCGAAGAAGCATGTATCATTTGAAAGCAAACTTCATGCCGGA
TTTATATTGGAATTCATTGATTCGTGGAACTTGGCCTGGTCCTGGTCCTG
TAAGAAAGATTTTACACATGGGAAGGGTTTGAAGgttttttttacggaat
ttaaTTTAATAGACACACAAAAAACGATATTCAatttagaaacatttttt
tataaaacacaTCATTTTGTACCGTAATGGTTTTTGTCTAGACAAAATCG
AACTCTTCTGCAAGATAGTAGAACTTTTTTGGAGACAATAATATTATGAG
CTACCTAAAGTTCTCCTAAATATCTTGAACAGTATACTCTAGCTTATTAG
AAATTCTGTTATTCGAATCgttctataatttgaactaaTTCTCATTTTCC
ATAAAGAAAGAactatactttctataattcgaatctctctgtattTCGAA
TAAATGAAATTCTTCATTCAAGCTCTAATTGCGAGAATCAACTATATATC
ATCTGTATCtatgttctttttattgaaatttttcacattttcaatCACGA
ATCAgaggaattaatttttttctgggtgcggcttttttttatattagagg
ttacaattttgatataaaaagaCTTTCTTAAAAAGggttgtaaatatttt
tttcaccgATTTATACTAACGATATtgattaataattaataattaattta
attgtttcttcGGTTGTTCTTGACAAATTTTTGTATCTAATTATTTTCGC
TTATGGAAAAAAATGACGATCTCAAATCAAA

Coding sequence (CDS) from alignment at scaffold_242:551160..557740+

>TCONS_00054219 ID=TCONS_00054219|Name=TCONS_00054219|organism=Clytia hemisphaerica|type=CDS|length=3960bp|location=Sequence derived from alignment at scaffold_242:551160..557740+ (Clytia hemisphaerica)
ATGGCATTGAGATTGAAACGAGTCCCGGTAACAAATTATCGCCATTTATG
TCGATGTCTGTCAACCAGCGGTAGTGTAAATTCAAACGTAGAGCACCATC
GATTTGCAGTGATTGGTGGTGGAGCTGGTGGTTTGAGCGTCGCATCTTAT
CTTGCAAGAAAGTTTCCAAATCAAGTAGCTGTAATTGAACCAGCAGATTA
TCATTACTATCAACCAATGTGGACATTAGTTGGTGCAGGATTGAAAGATT
TGGATGATTCGATGAAGTCAATGTCACTGGTCATGCCAAGAAATGTCAAA
TGGATTAAAGAAAAAGCGGTCAAATTCGACCCTAAAGAAAATCTCGTTCA
CACTGATAATGATCGACAGATCAAATATGATTTTGCTGTAGTTGCTCTTG
GCATTCAATTACAATTTGAAAAGCTTCCAGGTTTAACAGAGGCACTTGGT
ACCGATGGTGTAGGGTGCAATTATTCAGTCAACACAGTCAAGGATACATT
CAAAGGCTTACAAAAGTTCAATGGTGGTGAGGCTATCTTCACTTTGCCAG
CTACACCAGTGAAATGTCTTGGTGCTCCTCAAAAGATCATGTATCTTGCT
GATGAAATCTTTAGAAAGAATGGTTGTCGCGATCAGACCAATATTTCTTA
CAAAACACCAGCTGGAGTGTTATTCGGTGTTGAAAAATACAGAAATTCTT
TACTGAAAGTTTGTGCAGAAAGAGACATCAACGTTGACTTGTTCCGCCAT
CTCATACAAATCGACCCTTCAAGAAAAGAAGTCGNACGTTGAATGGCATT
GAGATTGAAACGAGTCCCGGTAACAAATTATCGCCATTTATGTCGATGTC
TGTCAACCAGCGGTAGTGTAAATTCAAACGTAGAGCACCATCGATTTGCA
GTGATTGGTGGTGGAGCTGGTGGTTTGAGCGTCGCATCTTATCTTGCAAG
AAAGTTTCCAAATCAAGTAGCTGTAATTGAACCAGCAGATTATCATTACT
ATCAACCAATGTGGACATTAGTTGGTGCAGGATTGAAAGATTTGGATGAT
TCGATGAAGTCAATGTCACTGGTCATGCCAAGAAATGTCAAATGGATTAA
AGAAAAAGCGGTCAAATTCGACCCTAAAGAAAATCTCGTTCACACTGATA
ATGATCGACAGATCAAATATGATTTTGCTGTAGTTGCTCTTGGCATTCAA
TTACAATTTGAAAAGCTTCCAGGTTTAACAGAGGCACTTGGTACCGATGG
TGTAGGGTGCAATTATTCAGTCAACACAGTCAAGGATACATTCAAAGGCT
TACAAAAGTTCAATGGTGGTGAGGCTATCTTCACTTTGCCAGCTACACCA
GTGAAATGTCTTGGTGCTCCTCAAAAGATCATGTATCTTGCTGATGAAAT
CTTTAGAAAGAATGGTTGTCGCGATCAGACCAATATTTCTTACAAAACAC
CAGCTGGAGTGTTATTCGGTGTTGAAAAATACAGAAATTCTTTACTGAAA
GTTTGTGCAGAAAGAGACATCAACGTTGACTTGTTCCGCCATCTCATACA
AATCGACCCTTCAAGAAAAGAAGTCGNACGTTGAATGGCATTGAGATTGA
AACGAGTCCCGGTAACAAATTATCGCCATTTATGTCGATGTCTGTCAACC
AGCGGTAGTGTAAATTCAAACGTAGAGCACCATCGATTTGCAGTGATTGG
TGGTGGAGCTGGTGGTTTGAGCGTCGCATCTTATCTTGCAAGAAAGTTTC
CAAATCAAGTAGCTGTAATTGAACCAGCAGATTATCATTACTATCAACCA
ATGTGGACATTAGTTGGTGCAGGATTGAAAGATTTGGATGATTCGATGAA
GTCAATGTCACTGGTCATGCCAAGAAATGTCAAATGGATTAAAGAAAAAG
CGGTCAAATTCGACCCTAAAGAAAATCTCGTTCACACTGATAATGATCGA
CAGATCAAATATGATTTTGCTGTAGTTGCTCTTGGCATTCAATTACAATT
TGAAAAGCTTCCAGGTTTAACAGAGGCACTTGGTACCGATGGTGTAGGGT
GCAATTATTCAGTCAACACAGTCAAGGATACATTCAAAGGCTTACAAAAG
TTCAATGGTGGTGAGGCTATCTTCACTTTGCCAGCTACACCAGTGAAATG
TCTTGGTGCTCCTCAAAAGATCATGTATCTTGCTGATGAAATCTTTAGAA
AGAATGGTTGTCGCGATCAGACCAATATTTCTTACAAAACACCAGCTGGA
GTGTTATTCGGTGTTGAAAAATACAGAAATTCTTTACTGAAAGTTTGTGC
AGAAAGAGACATCAACGTTGACTTGTTCCGCCATCTCATACAAATCGACC
CTTCAAGAAAAGAAGTCGNACGTTGAATGGCATTGAGATTGAAACGAGTC
CCGGTAACAAATTATCGCCATTTATGTCGATGTCTGTCAACCAGCGGTAG
TGTAAATTCAAACGTAGAGCACCATCGATTTGCAGTGATTGGTGGTGGAG
CTGGTGGTTTGAGCGTCGCATCTTATCTTGCAAGAAAGTTTCCAAATCAA
GTAGCTGTAATTGAACCAGCAGATTATCATTACTATCAACCAATGTGGAC
ATTAGTTGGTGCAGGATTGAAAGATTTGGATGATTCGATGAAGTCAATGT
CACTGGTCATGCCAAGAAATGTCAAATGGATTAAAGAAAAAGCGGTCAAA
TTCGACCCTAAAGAAAATCTCGTTCACACTGATAATGATCGACAGATCAA
ATATGATTTTGCTGTAGTTGCTCTTGGCATTCAATTACAATTTGAAAAGC
TTCCAGGTTTAACAGAGGCACTTGGTACCGATGGTGTAGGGTGCAATTAT
TCAGTCAACACAGTCAAGGATACATTCAAAGGCTTACAAAAGTTCAATGG
TGGTGAGGCTATCTTCACTTTGCCAGCTACACCAGTGAAATGTCTTGGTG
CTCCTCAAAAGATCATGTATCTTGCTGATGAAATCTTTAGAAAGAATGGT
TGTCGCGATCAGACCAATATTTCTTACAAAACACCAGCTGGAGTGTTATT
CGGTGTTGAAAAATACAGAAATTCTTTACTGAAAGTTTGTGCAGAAAGAG
ACATCAACGTTGACTTGTTCCGCCATCTCATACAAATCGACCCTTCAAGA
AAAGAAGTCGNACGTTGAATGGCATTGAGATTGAAACGAGTCCCGGTAAC
AAATTATCGCCATTTATGTCGATGTCTGTCAACCAGCGGTAGTGTAAATT
CAAACGTAGAGCACCATCGATTTGCAGTGATTGGTGGTGGAGCTGGTGGT
TTGAGCGTCGCATCTTATCTTGCAAGAAAGTTTCCAAATCAAGTAGCTGT
AATTGAACCAGCAGATTATCATTACTATCAACCAATGTGGACATTAGTTG
GTGCAGGATTGAAAGATTTGGATGATTCGATGAAGTCAATGTCACTGGTC
ATGCCAAGAAATGTCAAATGGATTAAAGAAAAAGCGGTCAAATTCGACCC
TAAAGAAAATCTCGTTCACACTGATAATGATCGACAGATCAAATATGATT
TTGCTGTAGTTGCTCTTGGCATTCAATTACAATTTGAAAAGCTTCCAGGT
TTAACAGAGGCACTTGGTACCGATGGTGTAGGGTGCAATTATTCAGTCAA
CACAGTCAAGGATACATTCAAAGGCTTACAAAAGTTCAATGGTGGTGAGG
CTATCTTCACTTTGCCAGCTACACCAGTGAAATGTCTTGGTGCTCCTCAA
AAGATCATGTATCTTGCTGATGAAATCTTTAGAAAGAATGGTTGTCGCGA
TCAGACCAATATTTCTTACAAAACACCAGCTGGAGTGTTATTCGGTGTTG
AAAAATACAGAAATTCTTTACTGAAAGTTTGTGCAGAAAGAGACATCAAC
GTTGACTTGTTCCGCCATCTCATACAAATCGACCCTTCAAGAAAAGAAGT
CGNACGTTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034198	XLOC_034198	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00054219-protein	TCONS_00054219-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_242	supercontig	scaffold_242:551160..557740 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
66.7939	72.4541	54.6928	46.1199	45.5118	32.481	35.2047	40.5517	44.0199	46.4134	45.9741	57.102	39.4937	39.6628	47.2074	65.4017	28.1594	35.3689	27.8156	25.5981	28.294	26.9654	36.168	33.3375	21.5447	20.703	26.0041	29.254	31.4261	30.4495

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR023753	FAD/NAD-binding_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0016491	oxidoreductase activity

Blast

[Close]

BLAST of TCONS_00054219 vs. Swiss-Prot (Human)
Match: SQOR (Sulfide:::quinone oxidoreductase, mitochondrial OS=Homo sapiens GN=SQOR PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.496e-64
Identity = 107/239 (44.77%), Postives = 163/239 (68.20%), Query Frame = 2

Query:  113 SGSVNSNVEHHRFAVIGGGAGGLSVASYLARKF-PNQVAVIEPADYHYYQPMWTLVGAGLKDLDDSMKSMSLVMPRNVKWIKEKAVKFDPKENLVHTDNDRQIKYDFAVVALGIQLQFEKLPGLTEALGTDGVGCNYSVNTVKDTFKGLQKFNGGEAIFTLPATPVKCLGAPQKIMYLADEIFRKNGCRDQTNISYKTPAGVLFGVEKYRNSLLKVCAERDINVDLFRHLIQIDPSRKE 826
            +G+ ++   H+   V+GGG+GG+++A+ + RK     VA++EP++ H+YQP+WTLVGAG K L  S +  + V+P  V+WIK +  + +P +N +HTD+D +I Y + ++ALGIQL +EK+ GL E      +G NYSV TV+ T+K LQ F  G AIFT P TPVKC GAPQKIMYL++  FRK G R + NI + T  G +FGV+KY ++L ++  ER++ V+  ++LI++   ++E
Sbjct:   34 TGASHAARNHYEVLVLGGGSGGITMAARMKRKVGAENVAIVEPSERHFYQPIWTLVGAGAKQLSSSGRPTASVIPSGVEWIKARVTELNPDKNCIHTDDDEKISYRYLIIALGIQLDYEKIKGLPEGFAHPKIGSNYSVKTVEKTWKALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKTGKRSKANIIFNTSLGAIFGVKKYADALQEIIQERNLTVNYKKNLIEVRADKQE 272

HSP 2 Score: 213.386 bits (542), Expect = 6.824e-61
Identity = 99/209 (47.37%), Postives = 142/209 (67.94%), Query Frame = 3

Query:  792 AISYKSTLQEKKSXVDLFRHLIKIDPARKEVVFEHTNDESTPKKTETLKYDFIHVTPPMGPYPVLKNSLLADDNGFVNVDKHTCQHVQYSNVFSLGDCSSLPNSKTAAAVAAQSEVVRKNLTSLVNGKPLQSKYDGYASCPLITSSKSCILAEFNYDGQPQETFPLDQGVERRSMYHLKANFMPDLYWNSLIRGTWPGPGPVRKILHMG 1418
            A + +  +QE+   V+  ++LI++   ++E VFE+ +    P +T+ + Y+ +HVTPPM P  VLK S +AD  G+V+VDK T QH +Y NVF +GDC++LP SKTAAAVAAQS ++ + ++ ++  +    KYDGY SCPL+T     ILAEF+Y  +P ETFP DQ  ER SMY +KA+ MP LYWN ++RG W GP  +RK+ H+G
Sbjct:  243 ADALQEIIQERNLTVNYKKNLIEVRADKQEAVFENLDK---PGETQVISYEMLHVTPPMSPPDVLKTSPVADAAGWVDVDKETLQHRRYPNVFGIGDCTNLPTSKTAAAVAAQSGILDRTISVIMKNQTPTKKYDGYTSCPLVTGYNRVILAEFDYKAEPLETFPFDQSKERLSMYLMKADLMPFLYWNMMLRGYWGGPAFLRKLFHLG 448

The following BLAST results are available for this feature:

BLAST of TCONS_00054219 vs. Swiss-Prot (Human)

BLAST of TCONS_00054219 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SQOR	1.496e-64	44.77	Sulfide:::quinone oxidoreductase, mitochondrial OS...	[more]

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TCONS_00054219 (transcript) - C. hemisphaerica